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397 changed files with 848297 additions and 166535 deletions
+6 -32
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@@ -1,29 +1,10 @@
from typing import List
from ratemate import RateLimit
import argparse
parser = argparse.ArgumentParser()
parser.add_argument("--dry_run",
type=bool,
default=False)
args = parser.parse_args()
from resource_cleanup_manager import (
DatasetResourceCleanupManager,
ModelResourceCleanupManager,
EndpointResourceCleanupManager,
ResourceCleanupManager,
MatchingEngineIndexEndpointResourceCleanupManager,
MatchingEngineIndexResourceCleanupManager,
FeatureStoreCleanupManager,
PipelineJobCleanupManager,
TrainingJobCleanupManager,
HyperparameterTuningCleanupManager,
BatchPredictionJobCleanupManager,
ExperimentCleanupManager,
BucketCleanupManager,
ArtifactRegistryCleanupManager
)
rate_limit = RateLimit(max_count=25, per=60, greedy=False)
@@ -40,6 +21,7 @@ def run_cleanup_managers(managers: List[ResourceCleanupManager], is_dry_run: boo
try:
if not manager.is_deletable(resource):
continue
if is_dry_run:
resource_name = manager.resource_name(resource)
print(f"Will delete '{type_name}': {resource_name}")
@@ -52,24 +34,16 @@ def run_cleanup_managers(managers: List[ResourceCleanupManager], is_dry_run: boo
print("")
if args.dry_run:
is_dry_run = False
if is_dry_run:
print("Starting cleanup in dry run mode...")
# List of all cleanup managers
managers: List[ResourceCleanupManager] = [
managers = [
DatasetResourceCleanupManager(),
EndpointResourceCleanupManager(),
ModelResourceCleanupManager(), # ModelResourceCleanupManager must follow EndpointResourceCleanupManager due to deployed models blocking model deletion.
MatchingEngineIndexEndpointResourceCleanupManager(),
MatchingEngineIndexResourceCleanupManager(),
FeatureStoreCleanupManager(),
PipelineJobCleanupManager(),
TrainingJobCleanupManager(),
HyperparameterTuningCleanupManager(),
BatchPredictionJobCleanupManager(),
ExperimentCleanupManager(), # Experiment missing _resource_noun
BucketCleanupManager(),
ArtifactRegistryCleanupManager()
]
run_cleanup_managers(managers=managers, is_dry_run=args.dry_run)
run_cleanup_managers(managers=managers, is_dry_run=is_dry_run)
@@ -1,18 +1,8 @@
'''
READ FIRST BEFORE MAKING CHANGES
- Create a convention for resources created from vertex-ai-samples GH. We already have one IIRC
- Only delete those objects as part of our clean-up script.
- Don't run any tests on python-docs-samples-tests project, especially ones that affect resources created outside of our purview
- Add --dry-run option to the clean-up script. This option will just output the list of resources the script will delete instead of actually deleting the resources.
- Have a larger conversation in DEE before touching any resources that were not created as part of vertex-ai-samples
'''
import os
import abc
from typing import Any, Type
from google.cloud import aiplatform
from google.cloud.aiplatform import base
from google.cloud import storage
from proto.datetime_helpers import DatetimeWithNanoseconds
# If a resource was updated within this number of seconds, do not delete.
@@ -79,7 +69,7 @@ class VertexAIResourceCleanupManager(ResourceCleanupManager):
def delete(self, resource):
resource.delete()
def get_seconds_since_modification(self, resource: Any) -> float:
def get_seconds_since_modification(self, resource: Any) -> bool:
update_time = resource.update_time
current_time = DatetimeWithNanoseconds.now(tz=update_time.tzinfo)
return (current_time - update_time).total_seconds()
@@ -107,154 +97,15 @@ class EndpointResourceCleanupManager(VertexAIResourceCleanupManager):
vertex_ai_resource = aiplatform.Endpoint
def delete(self, resource):
# TODO: Remove this once https://github.com/googleapis/python-aiplatform/issues/1441 is fixed
resource._sync_gca_resource()
for deployed_model_id in [
models.id for models in resource._gca_resource.deployed_models
]:
resource._undeploy(deployed_model_id=deployed_model_id)
resource.delete(force=True)
class ModelResourceCleanupManager(VertexAIResourceCleanupManager):
vertex_ai_resource = aiplatform.Model
class MatchingEngineIndexResourceCleanupManager(VertexAIResourceCleanupManager):
vertex_ai_resource = aiplatform.MatchingEngineIndex
class MatchingEngineIndexEndpointResourceCleanupManager(VertexAIResourceCleanupManager):
vertex_ai_resource = aiplatform.MatchingEngineIndexEndpoint
def delete(self, resource):
resource.undeploy_all()
resource.delete(force=True)
class FeatureStoreCleanupManager(VertexAIResourceCleanupManager):
vertex_ai_resource = aiplatform.Featurestore
def resource_name(self, resource: Any) -> str:
return resource.name
class PipelineJobCleanupManager(VertexAIResourceCleanupManager):
vertex_ai_resource = aiplatform.PipelineJob
class TrainingJobCleanupManager(VertexAIResourceCleanupManager):
vertex_ai_resource = aiplatform.training_jobs._CustomTrainingJob
job_types = [
aiplatform.AutoMLImageTrainingJob,
aiplatform.AutoMLTextTrainingJob,
aiplatform.AutoMLTabularTrainingJob,
aiplatform.AutoMLVideoTrainingJob,
aiplatform.AutoMLForecastingTrainingJob,
aiplatform.CustomJob,
aiplatform.CustomTrainingJob,
aiplatform.CustomContainerTrainingJob,
aiplatform.CustomPythonPackageTrainingJob
]
def list(self) -> Any:
return [
job
for job_type in self.job_types
for job in job_type.list()
]
class HyperparameterTuningCleanupManager(VertexAIResourceCleanupManager):
vertex_ai_resource = aiplatform.HyperparameterTuningJob
class BatchPredictionJobCleanupManager(VertexAIResourceCleanupManager):
vertex_ai_resource = aiplatform.BatchPredictionJob
class ExperimentCleanupManager(VertexAIResourceCleanupManager):
vertex_ai_resource = aiplatform.Experiment
@property
def type_name(self) -> str:
return "Experiment"
def resource_name(self, resource: Any) -> str:
return resource.name
def get_seconds_since_modification(self, resource: Any) -> float:
update_time = resource._metadata_context.update_time
current_time = DatetimeWithNanoseconds.now()
return float(current_time.timestamp() - update_time.timestamp())
class BucketCleanupManager(ResourceCleanupManager):
vertex_ai_resource = storage.bucket.Bucket
def list(self) -> Any:
storage_client = storage.Client()
return list(storage_client.list_buckets())
def delete(self, resource):
try:
resource.delete(force=True)
except Exception as e:
print(e)
@property
def type_name(self) -> str:
return "Bucket"
def get_seconds_since_modification(self, resource: Any) -> float:
# Bucket has no last_update property, only time created
created_time = resource.time_created
current_time = DatetimeWithNanoseconds.now()
return float(current_time.timestamp() - created_time.timestamp())
def resource_name(self, resource: Any) -> str:
return resource.name
def is_deletable(self, resource: Any) -> bool:
time_difference = self.get_seconds_since_modification(resource)
if not self.resource_name(resource).startswith('your-bucket-name'):
print(f"Skipping '{resource}' not a Vertex AI notebook bucket")
return False
# Check that it wasn't created too recently, to prevent race conditions
if time_difference <= RESOURCE_UPDATE_BUFFER_IN_SECONDS:
print(
f"Skipping '{resource}' due to update_time being '{time_difference}', which is less than '{RESOURCE_UPDATE_BUFFER_IN_SECONDS}'."
)
return False
return True
class ArtifactRegistryCleanupManager(ResourceCleanupManager):
vertex_ai_resource = "Artifact Registry"
def list(self) -> Any:
import subprocess
result = subprocess.run(["gcloud artifacts repositories list --location=us-central1"],
shell=True, capture_output=True, text=True)
ret = []
lines = result.stdout.split('\n')[2:]
for line in lines:
repo = line.split(' ')[0]
if repo.startswith("my-docker-repo"):
ret.append(repo)
return ret
def delete(self, resource):
os.system(f"! gcloud artifacts repositories delete {resource} --location=us-central1")
@property
def type_name(self) -> str:
return "ArtifactRepository"
def resource_name(self, resource: Any) -> str:
return resource
# delete repository regardless of age
def get_seconds_since_modification(self, resource: Any) -> float:
return RESOURCE_UPDATE_BUFFER_IN_SECONDS + 1
def is_deleteable(self, resource: Any) -> bool:
return True
+13 -55
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@@ -17,7 +17,6 @@
import argparse
import pathlib
import os
import execute_changed_notebooks_helper
@@ -40,19 +39,6 @@ parser.add_argument(
help="The path to the file that has newline-limited folders of notebooks that should be tested.",
required=True,
)
parser.add_argument(
"--test_percent",
type=int,
help="The percent of notebooks to be tested (between 1 and 100).",
required=False,
default=100,
)
parser.add_argument(
"--build_id",
type=str,
help="The build id (which may be a Cloud Build job specific or user explicit.",
required=True
)
parser.add_argument(
"--base_branch",
help="The base git branch to diff against to find changed files.",
@@ -121,52 +107,24 @@ parser.add_argument(
default=True,
help="Should run notebooks in parallel.",
)
parser.add_argument(
"--dry_run",
type=str2bool,
default=False,
help="Dry run for testing - no execution",
)
args = parser.parse_args()
changed_notebooks = execute_changed_notebooks_helper.get_changed_notebooks(
notebooks = execute_changed_notebooks_helper.get_changed_notebooks(
test_paths_file=args.test_paths_file,
base_branch=args.base_branch,
)
results_bucket = f"{args.artifacts_bucket}"
# artifacts_bucket may get set by trigger to a full gs:// folder path
if results_bucket.startswith("gs://"):
results_bucket = results_bucket[5:]
results_bucket = results_bucket.split('/')[0]
results_file = f"build_results/{args.build_id}.json"
if args.test_percent == 100:
notebooks = changed_notebooks
accumulative_results = {}
else:
accumulative_results = execute_changed_notebooks_helper.load_results(results_bucket, results_file)
notebooks = [changed_notebook for changed_notebook in changed_notebooks if execute_changed_notebooks_helper.select_notebook(changed_notebook, accumulative_results, args.test_percent)]
if args.dry_run:
print("Dry run ...\n")
for notebook in notebooks:
print(f"Would execute: {notebook}")
else:
execute_changed_notebooks_helper.process_and_execute_notebooks(
notebooks=notebooks,
container_uri=args.container_uri,
staging_bucket=args.staging_bucket,
artifacts_bucket=args.artifacts_bucket,
results_file=results_file,
should_parallelize=args.should_parallelize,
timeout=args.timeout,
variable_project_id=args.variable_project_id,
variable_region=args.variable_region,
variable_service_account=args.variable_service_account,
variable_vpc_network=args.variable_vpc_network,
private_pool_id=args.private_pool_id
execute_changed_notebooks_helper.process_and_execute_notebooks(
notebooks=notebooks,
container_uri=args.container_uri,
staging_bucket=args.staging_bucket,
artifacts_bucket=args.artifacts_bucket,
should_parallelize=args.should_parallelize,
timeout=args.timeout,
variable_project_id=args.variable_project_id,
variable_region=args.variable_region,
variable_service_account=args.variable_service_account,
variable_vpc_network=args.variable_vpc_network,
private_pool_id=args.private_pool_id,
)
+27 -196
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@@ -17,20 +17,13 @@ import concurrent
import dataclasses
import datetime
import functools
import json
import git
import operator
import os
import io
import json
import pathlib
import re
import subprocess
import random
from google.cloud import storage
import utils
from typing import List, Optional, Dict, Any
from utils import util
from typing import List, Optional
import execute_notebook_helper
import execute_notebook_remote
@@ -42,10 +35,6 @@ from utils import NotebookProcessors, util
# A buffer so that workers finish before the orchestrating job
WORKER_TIMEOUT_BUFFER_IN_SECONDS: int = 60 * 60
PYTHON_VERSION = "3.9" # Set default python version
# rolling time window for accumulating build results for selecting notebooks
MAX_RESULTS_AGE_SECONDS: int = (60 * 60) * 24 * 60 # 60 days
def format_timedelta(delta: datetime.timedelta) -> str:
@@ -72,14 +61,11 @@ def format_timedelta(delta: datetime.timedelta) -> str:
@dataclasses.dataclass
class NotebookExecutionResult:
name: str
path: str
duration: datetime.timedelta
start_time: datetime.datetime
is_pass: bool
log_url: str
output_uri: str
build_id: str
logs_bucket: str
error_message: Optional[str]
@property
@@ -90,75 +76,6 @@ class NotebookExecutionResult:
return None
def load_results(results_bucket: str,
results_file: str) -> Dict[str, Any]:
'''
Load accumulated notebook test results
'''
print("Loading existing accumulative results ...")
accumulative_results = {}
try:
client = storage.Client()
bucket = client.bucket(results_bucket)
build_results_dir = os.path.dirname(results_file)
blobs = client.list_blobs(results_bucket, prefix=build_results_dir)
for blob in blobs:
time_created = blob.time_created.replace(tzinfo=None)
if (datetime.datetime.now().replace(tzinfo=None) - time_created).total_seconds() > MAX_RESULTS_AGE_SECONDS:
continue
content = util.download_blob_into_memory(results_bucket, blob.name, download_as_text=True)
try:
build_results = json.loads(content)
except:
continue # skip corrupted build results files
for notebook in build_results:
if notebook in accumulative_results:
accumulative_results[notebook]['passed'] += build_results[notebook]['passed']
accumulative_results[notebook]['failed'] += build_results[notebook]['failed']
else:
accumulative_results[notebook] = build_results[notebook]
print(accumulative_results)
except Exception as e:
print(e)
# If there are no accumulative results, an empty dict is returned
return accumulative_results
def select_notebook(changed_notebook: str,
accumulative_results: Dict[str, Any],
test_percent: int) -> bool:
'''
Algorithm to randomly select a notebook, but weight the propbability of selected based on past failures
'''
if changed_notebook in accumulative_results:
pass_count = accumulative_results[changed_notebook]['passed']
fail_count = accumulative_results[changed_notebook]['failed']
else:
pass_count = 1
fail_count = 0
inferred_failure_rate = fail_count / (pass_count + fail_count)
# If failure rate is high, the chance of testing should be higher
should_test_due_to_failure = random.uniform(0, 1) <= inferred_failure_rate
# Additionally, only test a percentage of these
should_test_due_to_random_subset = random.uniform(0, 1) <= (test_percent / 100)
if should_test_due_to_failure or should_test_due_to_random_subset:
print(f"Selected: {changed_notebook}, {should_test_due_to_failure}, {should_test_due_to_random_subset}")
return True
else:
print(f"Not Selected: {changed_notebook}, pass {pass_count}, fail {fail_count}")
return False
def _process_notebook(
notebook_path: str,
variable_project_id: str,
@@ -180,7 +97,6 @@ def _process_notebook(
"VPC_NETWORK": variable_vpc_network,
},
)
unique_strings_preprocessor = NotebookProcessors.UniqueStringsPreprocessor()
# Use no-execute preprocessor
(
@@ -189,41 +105,11 @@ def _process_notebook(
) = remove_no_execute_cells_preprocessor.preprocess(nb)
(nb, resources) = update_variables_preprocessor.preprocess(nb, resources)
(nb, resources) = unique_strings_preprocessor.preprocess(nb, resources)
with open(notebook_path, mode="w", encoding="utf-8") as new_file:
nbformat.write(nb, new_file)
def _get_notebook_python_version(notebook_path: str) -> str:
"""
Get the python version for running the notebook if it is specified in
the notebook.
"""
python_version = PYTHON_VERSION
# Load the notebook
file = open(notebook_path)
src = file.read()
nb_json = json.loads(src)
# Iterate over the cells in the ipynb
for cell in nb_json["cells"]:
if cell["cell_type"] == "markdown":
markdown = str.join("", cell["source"])
# Look for the python version specification pattern
re_match = re.search(
"python version = (\d\.\d)", markdown, flags=re.IGNORECASE
)
if re_match:
# get the version number
python_version = re_match.group(1)
break
return python_version
def _create_tag(filepath: str) -> str:
tag = os.path.basename(os.path.normpath(filepath))
tag = re.sub("[^0-9a-zA-Z_.-]+", "-", tag)
@@ -234,7 +120,7 @@ def _create_tag(filepath: str) -> str:
return tag
rate_limit = RateLimit(max_count=10, per=60, greedy=True)
rate_limit = RateLimit(max_count=50, per=60, greedy=True)
def process_and_execute_notebook(
@@ -269,26 +155,18 @@ def process_and_execute_notebook(
result = NotebookExecutionResult(
name=tag,
path=notebook,
duration=datetime.timedelta(seconds=0),
start_time=datetime.datetime.now(),
is_pass=False,
output_uri=notebook_output_uri,
log_url="",
build_id="",
logs_bucket="",
error_message=None,
)
# TODO: Handle cases where multiple notebooks have the same name
time_start = datetime.datetime.now()
operation = None
try:
# Get the python version for running the notebook if specified
notebook_exec_python_version = _get_notebook_python_version(
notebook_path=notebook
)
print(f"Running notebook with python {notebook_exec_python_version}")
# Pre-process notebook by substituting variable names
_process_notebook(
notebook_path=notebook,
@@ -315,21 +193,18 @@ def process_and_execute_notebook(
private_pool_id=private_pool_id,
private_pool_region=variable_region,
timeout_in_seconds=timeout_in_seconds,
python_version=notebook_exec_python_version,
)
operation_metadata = BuildOperationMetadata(mapping=operation.metadata)
result.build_id = operation_metadata.build.id
result.log_url = operation_metadata.build.log_url
result.logs_bucket = operation_metadata.build.logs_bucket
# Block and wait for the result
operation_result = operation.result(timeout=timeout_in_seconds)
operation_result = operation.result()
result.duration = datetime.datetime.now() - result.start_time
result.duration = datetime.datetime.now() - time_start
result.is_pass = True
print(f"{notebook} PASSED in {format_timedelta(result.duration)}.")
except Exception as error:
result.error_message = str(error)
@@ -348,7 +223,7 @@ def process_and_execute_notebook(
except Exception as error:
result.error_message = str(error)
result.duration = datetime.datetime.now() - result.start_time
result.duration = datetime.datetime.now() - time_start
result.is_pass = False
print(
@@ -416,44 +291,12 @@ def get_changed_notebooks(
return notebooks
def _save_results(results: List[NotebookExecutionResult],
artifacts_bucket: str,
results_file: str):
artifacts_bucket = artifacts_bucket.replace("gs://", "").split('/')[0]
print("Updating build results ...")
build_results = {}
for result in results:
if result.is_pass:
pass_count = 1
fail_count = 0
else:
pass_count = 0
fail_count = 1
build_results[result.path] = {
'duration': result.duration.total_seconds(),
'start_time': str(result.start_time),
'passed': pass_count,
'failed': fail_count
}
print(f"adding {result.path}")
print("Saving accumulative results ...")
content = json.dumps(build_results)
client = storage.Client()
bucket = client.get_bucket(artifacts_bucket)
bucket.blob(str(results_file)).upload_from_string(content, 'text/json')
def process_and_execute_notebooks(
notebooks: List[str],
container_uri: str,
staging_bucket: str,
artifacts_bucket: str,
results_file: str,
should_parallelize: bool,
timeout: int,
variable_project_id: str,
@@ -481,8 +324,6 @@ def process_and_execute_notebooks(
Required. The GCS staging bucket to write source code to.
artifacts_bucket (str):
Required. The GCS staging bucket to write executed notebooks to.
results_file (str):
Required: The path to the artifacts bucket to save results
variable_project_id (str):
Required. The value for PROJECT_ID to inject into notebooks.
variable_region (str):
@@ -498,7 +339,7 @@ def process_and_execute_notebooks(
seconds=max(timeout - WORKER_TIMEOUT_BUFFER_IN_SECONDS, 0)
)
if len(notebooks) >= 1:
if len(notebooks) > 1:
notebook_execution_results: List[NotebookExecutionResult] = []
print(f"Found {len(notebooks)} modified notebooks: {notebooks}")
@@ -563,7 +404,6 @@ def process_and_execute_notebooks(
result.log_url,
result.output_uri,
result.output_uri_web,
result.logs_bucket,
]
for result in results_sorted
],
@@ -574,39 +414,10 @@ def process_and_execute_notebooks(
"log_url",
"output_uri",
"output_uri_web",
"logs_bucket",
],
)
)
if len(notebooks) == 1:
print("=" * 100)
print("The notebook execution build log:\n")
print("=" * 100)
build_id = results_sorted[0].build_id
logs_bucket_name = (results_sorted[0].logs_bucket).replace("gs://", "")
log_file_name = f"log-{build_id}.txt"
log_contents = util.download_blob_into_memory(
bucket_name=logs_bucket_name,
blob_name=log_file_name,
download_as_text=True,
)
# Remove extra steps from the log
match = re.search("starting Step #4", log_contents, flags=re.IGNORECASE)
if match is not None:
match_index = match.span()[0]
print(log_contents[match_index:])
else:
print(log_contents)
_save_results(results_sorted,
artifacts_bucket,
results_file)
print("\n=== END RESULTS===\n")
total_notebook_duration = functools.reduce(
@@ -622,5 +433,25 @@ def process_and_execute_notebooks(
# Raise error if any notebooks failed
if not all([result.is_pass for result in results_sorted]):
raise RuntimeError("Notebook failures detected. See logs for details")
elif len(notebooks) == 1:
notebook = notebooks[0]
# Pre-process notebook by substituting variable names
_process_notebook(
notebook_path=notebook,
variable_project_id=variable_project_id,
variable_region=variable_region,
variable_service_account=variable_service_account,
variable_vpc_network=variable_vpc_network,
)
execute_notebook_helper.execute_notebook(
notebook_source=notebook,
output_file_or_uri="/".join(
[artifacts_bucket, pathlib.Path(notebook).name]
),
should_log_output=True,
)
else:
print("No notebooks modified in this pull request.")
-5
View File
@@ -40,7 +40,6 @@ def execute_notebook_remote(
private_pool_region: Optional[str],
tag: Optional[str],
timeout_in_seconds: Optional[int] = None,
python_version: Optional[str] = None
) -> operation.Operation:
"""Create and execute a single notebook on Google Cloud Build"""
# Load build steps from YAML
@@ -51,12 +50,8 @@ def execute_notebook_remote(
"_PYTHON_IMAGE": container_uri,
"_NOTEBOOK_GCS_URI": notebook_uri,
"_NOTEBOOK_OUTPUT_GCS_URI": notebook_output_uri,
"_PYTHON_VERSION" : f"python{python_version}"
}
if python_version is not None:
substitutions["_PYTHON_VERSION"] = "python" + python_version
build = cloudbuild_v1.Build()
options: Optional[client_options.ClientOptions] = None
@@ -10,21 +10,21 @@ steps:
entrypoint: /bin/sh
args:
- -c
- ${_PYTHON_VERSION} .cloud-build/CheckPythonVersion.py -q
- python3 .cloud-build/CheckPythonVersion.py -q
# Create a virtual environment
- name: ${_PYTHON_IMAGE}
entrypoint: /bin/sh
args:
- -c
- ${_PYTHON_VERSION} -m venv workspace/env
- python3 -m venv workspace/env
# Install Python dependencies
- name: ${_PYTHON_IMAGE}
entrypoint: /bin/sh
args:
- -c
- . workspace/env/bin/activate &&
python -m pip -q install -U pip &&
python -m pip -q install -U -r .cloud-build/requirements.txt
python3 -m pip -q install -U pip &&
python3 -m pip -q install -U -r .cloud-build/requirements.txt
# Install Python dependencies and run testing script
- name: ${_PYTHON_IMAGE}
entrypoint: /bin/sh
@@ -32,7 +32,7 @@ steps:
- -c
- |
. workspace/env/bin/activate &&
python .cloud-build/execute_notebook_cli.py --notebook_source "${_NOTEBOOK_GCS_URI}" --output_file_or_uri "${_NOTEBOOK_OUTPUT_GCS_URI}"
python3 .cloud-build/execute_notebook_cli.py --notebook_source "${_NOTEBOOK_GCS_URI}" --output_file_or_uri "${_NOTEBOOK_OUTPUT_GCS_URI}"
env:
- 'IS_TESTING=1'
timeout: 86400s
@@ -36,7 +36,7 @@ steps:
- -c
- |
. workspace/env/bin/activate &&
python3 .cloud-build/execute_changed_notebooks_cli.py --test_paths_file "${_TEST_PATHS_FILE}" --base_branch "${_FORCED_BASE_BRANCH}" --container_uri ${_PYTHON_IMAGE} --staging_bucket ${_GCS_STAGING_BUCKET} --artifacts_bucket ${_GCS_STAGING_BUCKET}/executed_notebooks/PR_${_PR_NUMBER}/BUILD_${BUILD_ID} --variable_project_id ${PROJECT_ID} --variable_region ${_GCP_REGION} --variable_service_account ${_GCP_SERVICE_ACCOUNT} --variable_vpc_network "${_GPC_VPC_NETWORK_NAME}" `if [ ! -z "${_PRIVATE_POOL_NAME}" ]; then echo "--private_pool_id ${_PRIVATE_POOL_NAME}"; fi` --build_id ${BUILD_ID} --test_percent=${_TEST_PERCENT}
python3 .cloud-build/execute_changed_notebooks_cli.py --test_paths_file "${_TEST_PATHS_FILE}" --base_branch "${_FORCED_BASE_BRANCH}" --container_uri ${_PYTHON_IMAGE} --staging_bucket ${_GCS_STAGING_BUCKET} --artifacts_bucket ${_GCS_STAGING_BUCKET}/executed_notebooks/PR_${_PR_NUMBER}/BUILD_${BUILD_ID} --variable_project_id ${PROJECT_ID} --variable_region ${_GCP_REGION} --variable_service_account ${_GCP_SERVICE_ACCOUNT} --variable_vpc_network "${_GPC_VPC_NETWORK_NAME}" `if [ ! -z "${_PRIVATE_POOL_NAME}" ]; then echo "--private_pool_id ${_PRIVATE_POOL_NAME}"; fi`
env:
- 'IS_TESTING=1'
timeout: 86400s
+2 -6
View File
@@ -3,15 +3,11 @@ numpy
jupyter
nbconvert
papermill
pandas
matplotlib
tabulate
google-cloud-aiplatform
google-cloud-storage
google-cloud-build
google-cloud-storage
ratemate
GitPython
tqdm
fsspec
pandas
GitPython
-40
View File
@@ -1,40 +0,0 @@
notebooks/official/training/pytorch_gcs_data_training.ipynb
notebooks/official/custom/custom_training_tensorboard_profiler.ipynb
notebooks/official/custom/custom-tabular-bq-managed-dataset.ipynb
notebooks/official/ml_metadata/sdk-metric-parameter-tracking-for-locally-trained-models.ipynb
notebooks/official/ml_metadata/sdk-metric-parameter-tracking-for-custom-jobs.ipynb
notebooks/official/tabnet/tabnet_vertex_tutorial.ipynb
notebooks/official/tabnet/get_started_with_tabnet.ipynb
notebooks/official/pipelines/google_cloud_pipeline_components_automl_text.ipynb
notebooks/official/pipelines/multicontender_vs_champion_deployment_method.ipynb
notebooks/official/pipelines/google_cloud_pipeline_components_automl_images.ipynb
notebooks/official/pipelines/rapid_prototyping_bqml_automl.ipynb
notebooks/official/pipelines/challenger_vs_blessed_deployment_method.ipynb
notebooks/official/matching_engine/sdk_matching_engine_create_stack_overflow_embeddings.ipynb
notebooks/official/matching_engine/sdk_matching_engine_for_indexing.ipynb
notebooks/official/matching_engine/sdk_matching_engine_create_text_to_image_embeddings.ipynb
notebooks/official/explainable_ai/sdk_custom_image_classification_online_explain.ipynb
notebooks/official/explainable_ai/xai_image_classification_feature_attributions.ipynb
notebooks/official/explainable_ai/sdk_custom_image_classification_batch_explain.ipynb
notebooks/official/tabular_workflows/tabnet_on_vertex_pipelines.ipynb
notebooks/official/model_registry/get_started_with_model_registry.ipynb
notebooks/official/model_registry/bqml_vertexai_model_registry.ipynb
notebooks/official/sdk/SDK_Custom_Training_Python_Package_Managed_Text_Dataset_Tensorflow_Serving_Container.ipynb
notebooks/official/model_monitoring/batch_prediction_model_monitoring.ipynb
notebooks/official/model_monitoring/get_started_with_model_monitoring_setup.ipynb
notebooks/official/model_monitoring/get_started_with_model_monitoring_custom.ipynb
notebooks/official/model_monitoring/get_started_with_model_monitoring_custom_tf_serving.ipynb
notebooks/official/model_monitoring/model_monitoring.ipynb
notebooks/official/tensorboard/tensorboard_profiler_custom_training_with_prebuilt_container.ipynb
notebooks/official/tensorboard/tensorboard_hyperparameter_tuning_with_hparams.ipynb
notebooks/official/tensorboard/tensorboard_profiler_custom_training.ipynb
notebooks/official/model_evaluation/custom_tabular_regression_model_evaluation.ipynb
notebooks/official/model_evaluation/custom_tabular_classification_model_evaluation.ipynb
notebooks/official/model_evaluation/automl_video_classification_model_evaluation.ipynb
notebooks/official/experiments/comparing_local_trained_models.ipynb
notebooks/official/automl/automl_image_classification_online_online_prediction.ipynb
notebooks/official/automl/automl-text-classification.ipynb
notebooks/official/automl/sdk_automl_video_object_tracking_batch.ipynb
notebooks/official/feature_store/sdk-feature-store-pandas.ipynb
notebooks/official/prediction/custom_batch_prediction_feature_filter.ipynb
notebooks/official/prediction/pytorch_image_classification_with_prebuilt_serving_containers.ipynb
+2 -2
View File
@@ -1,5 +1,5 @@
notebooks/official/vizier/gapic-vizier-multi-objective-optimization.ipynb
notebooks/official/pipelines/lightweight_functions_component_io_kfp.ipynb
notebooks/official/ml_metadata/sdk-metric-parameter-tracking-for-locally-trained-models.ipynb
notebooks/official/custom/custom-tabular-bq-managed-dataset.ipynb
.cloud-build/tests/python_version_test.ipynb
notebooks/official/pipelines/metrics_viz_run_compare_kfp.ipynb
notebooks/official/matching_engine/sdk_matching_engine_for_indexing.ipynb
-80
View File
@@ -1,80 +0,0 @@
notebooks/official/training/hyperparameter_tuning_tensorflow.ipynb
notebooks/official/training/get_started_with_vertex_distributed_training.ipynb
notebooks/official/training/hyperparameter_tuning_xgboost.ipynb
notebooks/official/training/multi_node_ddp_gloo_vertex_training_with_custom_container.ipynb
notebooks/official/training/distributed_hyperparameter_tuning.ipynb
notebooks/official/training/pytorch-text-sentiment-classification-custom-train-deploy.ipynb
notebooks/official/training/xgboost_data_parallel_training_on_cpu_using_dask.ipynb
notebooks/official/training/multi_node_ddp_nccl_vertex_training_with_custom_container.ipynb
notebooks/official/bigquery_ml/get_started_with_bqml_training.ipynb
notebooks/official/bigquery_ml/bqml-online-prediction.ipynb
notebooks/official/custom/custom_training_container_and_model_registry.ipynb
notebooks/official/custom/sdk-custom-image-classification-online.ipynb
notebooks/official/custom/sdk-custom-image-classification-batch.ipynb
notebooks/official/custom/SDK_FBProphet_Forecasting_Online.ipynb
notebooks/official/custom/get_started_vertex_training_xgboost.ipynb
notebooks/official/custom/get_started_with_vertex_endpoint_and_shared_vm.ipynb
notebooks/official/custom/SDK_Custom_Container_Prediction.ipynb
notebooks/official/reduction_server/pytorch_distributed_training_reduction_server.ipynb
notebooks/official/tabnet/ai-explanations-tabnet-algorithm.ipynb
notebooks/official/vizier/get_started_vertex_vizier.ipynb
notebooks/official/vizier/gapic-vizier-multi-objective-optimization.ipynb
notebooks/official/pipelines/get_started_with_hpt_pipeline_components.ipynb
notebooks/official/pipelines/google_cloud_pipeline_components_automl_tabular.ipynb
notebooks/official/pipelines/custom_tabular_train_batch_pred_bq_pipeline.ipynb
notebooks/official/pipelines/metrics_viz_run_compare_kfp.ipynb
notebooks/official/pipelines/google_cloud_pipeline_components_model_upload_predict_evaluate.ipynb
notebooks/official/pipelines/google_cloud_pipeline_components_model_train_upload_deploy.ipynb
notebooks/official/pipelines/get_started_with_machine_management.ipynb
notebooks/official/pipelines/custom_model_training_and_batch_prediction.ipynb
notebooks/official/pipelines/control_flow_kfp.ipynb
notebooks/official/pipelines/lightweight_functions_component_io_kfp.ipynb
notebooks/official/pipelines/google_cloud_pipeline_components_bqml_text.ipynb
notebooks/official/pipelines/pipelines_intro_kfp.ipynb
notebooks/official/pipelines/automl_tabular_classification_beans.ipynb
notebooks/official/pipelines/google_cloud_pipeline_components_dataproc_tabular.ipynb
notebooks/official/explainable_ai/sdk_automl_tabular_classification_online_explain.ipynb
notebooks/official/explainable_ai/sdk_custom_tabular_regression_online_explain.ipynb
notebooks/official/explainable_ai/sdk_automl_tabular_binary_classification_batch_explain.ipynb
notebooks/official/explainable_ai/sdk_custom_tabular_regression_online_explain_get_metadata.ipynb
notebooks/official/explainable_ai/sdk_custom_tabular_regression_batch_explain.ipynb
notebooks/official/tabular_workflows/prophet_on_vertex_pipelines.ipynb
notebooks/official/tabular_workflows/wide_and_deep_on_vertex_pipelines.ipynb
notebooks/official/sdk/SDK_AutoML_Video_Classification.ipynb
notebooks/official/model_monitoring/get_started_with_model_monitoring_automl.ipynb
notebooks/official/model_monitoring/get_started_with_model_monitoring_automl_image_batch.ipynb
notebooks/official/model_monitoring/get_started_with_model_monitoring_automl_image_online.ipynb
notebooks/official/model_monitoring/get_started_with_model_monitoring_xgboost.ipynb
notebooks/official/tensorboard/tensorboard_custom_training_with_custom_container.ipynb
notebooks/official/tensorboard/tensorboard_custom_training_with_prebuilt_container.ipynb
notebooks/official/tensorboard/tensorboard_vertex_ai_pipelines_integration.ipynb
notebooks/official/model_evaluation/automl_text_classification_model_evaluation.ipynb
notebooks/official/model_evaluation/get_started_with_custom_model_evaluation_import.ipynb
notebooks/official/model_evaluation/automl_tabular_classification_model_evaluation.ipynb
notebooks/official/model_evaluation/automl_tabular_regression_model_evaluation.ipynb
notebooks/official/experiments/get_started_with_vertex_experiments.ipynb
notebooks/official/experiments/comparing_pipeline_runs.ipynb
notebooks/official/experiments/get_started_with_vertex_experiments_autologging.ipynb
notebooks/official/experiments/build_model_experimentation_lineage_with_prebuild_code.ipynb
notebooks/official/experiments/delete_outdated_tensorboard_experiments.ipynb
notebooks/official/automl/sdk_automl_tabular_regression_batch_bq.ipynb
notebooks/official/automl/sdk_automl_text_sentiment_analysis_online.ipynb
notebooks/official/automl/sdk_automl_text_entity_extraction_online.ipynb
notebooks/official/automl/sdk_automl_forecasting_hierarchical_batch.ipynb
notebooks/official/automl/automl_text_entity_extraction_batch_prediction.ipynb
notebooks/official/automl/automl_image_classification_batch_prediction.ipynb
notebooks/official/automl/automl_text_sentiment_analysis_batch_prediction.ipynb
notebooks/official/automl/sdk_automl_tabular_regression_online_bq.ipynb
notebooks/official/automl/get_started_automl_training.ipynb
notebooks/official/automl/automl-tabular-classification.ipynb
notebooks/official/automl/automl_image_object_detection_export_edge.ipynb
notebooks/official/automl/sdk_automl_image_object_detection_batch.ipynb
notebooks/official/automl/automl_tabular_on_vertex_pipelines.ipynb
notebooks/official/automl/sdk_automl_video_classification_batch.ipynb
notebooks/official/automl/sdk_automl_video_action_recognition_batch.ipynb
notebooks/official/automl/sdk_automl_tabular_forecasting_batch.ipynb
notebooks/official/automl/automl_image_object_detection_online_prediction.ipynb
notebooks/official/automl/automl_forecasting_bqml_arima_plus_comparison.ipynb
notebooks/official/datasets/get_started_bq_datasets.ipynb
notebooks/official/datasets/get_started_with_data_labeling.ipynb
notebooks/official/feature_store/feature_store_streaming_ingestion_sdk.ipynb
+1 -1
View File
@@ -1 +1 @@
notebooks/official/custom/custom-tabular-bq-managed-dataset.ipynb
notebooks/official/pipelines/metrics_viz_run_compare_kfp.ipynb
-46
View File
@@ -1,46 +0,0 @@
# grep PASSED tests.txt | cut -c 10-100 >passed.txt
import os
repo_dir = '/home/jupyter/vertex-ai-samples/'
repo_dir_len = len(repo_dir)
official_dir = repo_dir + 'notebooks/official'
entries = os.scandir(official_dir)
folders = []
for entry in entries:
if entry.is_dir():
folders.append(entry.path)
# Passing
with open('passed.txt', 'r') as pass_file:
notebook_names = pass_file.readlines()
notebooks = []
for folder in folders:
entries = os.scandir(folder)
for entry in entries:
for notebook in notebook_names:
if entry.name == notebook.rstrip():
notebooks.append(entry.path[repo_dir_len:])
with open('passing_tests.txt', 'w') as f:
for notebook in notebooks:
f.write(notebook + '\n')
# Failing
with open('failed.txt', 'r') as fail_file:
notebook_names = fail_file.readlines()
notebooks = []
for folder in folders:
entries = os.scandir(folder)
for entry in entries:
for notebook in notebook_names:
if entry.name == notebook.rstrip():
notebooks.append(entry.path[repo_dir_len:])
with open('failing_tests.txt', 'w') as f:
for notebook in notebooks:
f.write(notebook + '\n')
@@ -1,61 +0,0 @@
{
"cells": [
{
"cell_type": "markdown",
"metadata": {
"id": "57a3d44ed8a8"
},
"source": [
"### Set up your Google Cloud project\n",
"\n",
"**_NOTE_**: This notebook has been tested in the following environment:\n",
"\n",
"* Python version = 3.7\n",
"\n",
"**The following steps are required, regardless of your notebook environment.**\n",
"\n",
"1. [Select or create a Google Cloud project](https://console.cloud.google.com/cloud-resource-manager). When you first create an account, you get a $300 free credit towards your compute/storage costs.\n",
"\n",
"1. [Make sure that billing is enabled for your project](https://cloud.google.com/billing/docs/how-to/modify-project).\n",
"\n",
"1. [Enable the Vertex AI API and Compute Engine API](https://console.cloud.google.com/flows/enableapi?apiid=aiplatform.googleapis.com,compute_component).\n",
"\n",
"1. If you are running this notebook locally, you will need to install the [Cloud SDK](https://cloud.google.com/sdk).\n",
"\n",
"1. Enter your project ID in the cell below. Then run the cell to make sure the\n",
"Cloud SDK uses the right project for all the commands in this notebook.\n",
"\n",
"**Note**: Jupyter runs lines prefixed with `!` as shell commands, and it interpolates Python variables prefixed with `$` into these commands."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "c6516f90311b"
},
"outputs": [],
"source": [
"# test if the right python version is being used\n",
"import sys\n",
"\n",
"actual_python_version = f\"{sys.version_info.major}.{sys.version_info.minor}\"\n",
"print(f\"Runtime python version: {actual_python_version}\")\n",
"\n",
"assert actual_python_version == \"3.7\", \"Wrong python version!\""
]
}
],
"metadata": {
"colab": {
"name": "python_version_test.ipynb",
"toc_visible": true
},
"kernelspec": {
"display_name": "Python 3",
"name": "python3"
}
},
"nbformat": 4,
"nbformat_minor": 0
}
@@ -1,33 +0,0 @@
import sys
from execute_changed_notebooks_helper import (load_results, select_notebook)
def test_load_results():
bucket: str = "cloud-build-notebooks-presubmit"
bucket_file: str = "build_results"
accum = load_results(bucket, bucket_file)
print(accum)
assert len(accum) > 0
def test_select_notebook():
bucket: str = "cloud-build-notebooks-presubmit"
bucket_file: str = "build_results"
accum = load_results(bucket, bucket_file)
n_select = 0
n_notselect = 0
for notebook in accum:
if select_notebook(notebook, accum, 50):
n_select += 1
else:
n_notselect += 1
print(f"SELECTED {n_select}, NOT SELECTED {n_notselect}")
assert n_select > 0
assert n_notselect > 0
-35
View File
@@ -14,8 +14,6 @@
# limitations under the License.
from typing import Dict
import random
import string
from nbconvert.preprocessors import Preprocessor
@@ -65,36 +63,3 @@ class UpdateVariablesPreprocessor(Preprocessor):
executable_cells.append(cell)
notebook.cells = executable_cells
return notebook, resources
# Generate a uuid of a specifed length
def generate_uuid(length: int = 8) -> str:
return "".join(random.choices(string.ascii_lowercase + string.digits, k=length))
class UniqueStringsPreprocessor(Preprocessor):
# A preprocessor that replaces strings that end with "-unique" or "_unique" with a uuid.
@staticmethod
def update_unique_strings(content: str):
# Replace strings that end with "-unique" or "_unique" with a uuid.
unique_id = generate_uuid()
return (
content.replace('-unique"', f'-{unique_id}"')
.replace("-unique'", f'-{unique_id}"')
.replace('_unique"', f'_{unique_id}"')
.replace("_unique'", f'_{unique_id}"')
)
def preprocess(self, notebook, resources=None):
executable_cells = []
for cell in notebook.cells:
if cell.cell_type == "code":
cell.source = self.update_unique_strings(
content=cell.source,
)
executable_cells.append(cell)
notebook.cells = executable_cells
return notebook, resources
@@ -40,3 +40,65 @@ def get_updated_value(content: str, variable_name: str, variable_value: str) ->
content,
flags=re.M,
)
def test_update_value():
new_content = get_updated_value(
content='asdf\nPROJECT_ID = "[your-project-id]" #@param {type:"string"} \nasdf',
variable_name="PROJECT_ID",
variable_value="sample-project",
)
assert (
new_content
== 'asdf\nPROJECT_ID = "sample-project" #@param {type:"string"} \nasdf'
)
def test_update_value_single_quotes():
new_content = get_updated_value(
content="PROJECT_ID = '[your-project-id]'",
variable_name="PROJECT_ID",
variable_value="sample-project",
)
assert new_content == "PROJECT_ID = 'sample-project'"
def test_update_value_avoidance():
new_content = get_updated_value(
content="PROJECT_ID = shell_output[0] ",
variable_name="PROJECT_ID",
variable_value="sample-project",
)
assert new_content == "PROJECT_ID = shell_output[0] "
def test_region():
new_content = get_updated_value(
content='REGION = "[your-region]" # @param {type:"string"}',
variable_name="REGION",
variable_value="us-central1",
)
assert new_content == 'REGION = "us-central1" # @param {type:"string"}'
def test_region_equal_equals_ignore():
# Tests that == is ignored
new_content = get_updated_value(
content='REGION == "[your-region]" # @param {type:"string"}',
variable_name="REGION",
variable_value="us-central1",
)
assert new_content == 'REGION == "[your-region]" # @param {type:"string"}'
def test_service_account():
# Tests that == is ignored
new_content = get_updated_value(
content='SERVICE_ACCOUNT = "[your-service-account]" # @param {type:"string"}',
variable_name="SERVICE_ACCOUNT",
variable_value="12345-compute@developer.gserviceaccount.com",
)
assert (
new_content
== 'SERVICE_ACCOUNT = "12345-compute@developer.gserviceaccount.com" # @param {type:"string"}'
)
@@ -1,22 +0,0 @@
'''
Viewer for the weekly regression testing of the official notebooks
Cloud Storage location: gs://cloud-build-notebooks-presubmit/build_results/
'''
import argparse
import json
parser = argparse.ArgumentParser()
parser.add_argument('--file', dest='file',
default='build.json', type=str, help='build results file')
import json
with open('build.json', 'r') as f:
results = json.load(f)
for item in results.items():
if item[1]['passed']:
print(f"{item[0]},PASSED")
else:
print(f"{item[0]},FAILED")
@@ -1,14 +0,0 @@
from utils import NotebookProcessors
def test_update_value():
# Test that the content was updated
preprocessor = NotebookProcessors.UniqueStringsPreprocessor()
content = 'PROJECT_ID = "your-project-id-unique"'
new_content = preprocessor.update_unique_strings(content)
assert new_content != content
assert new_content.startswith('PROJECT_ID = "your-project-id-')
assert new_content.endswith('"')
@@ -1,63 +0,0 @@
from utils import UpdateNotebookVariables
def test_update_value():
new_content = UpdateNotebookVariables.get_updated_value(
content='asdf\nPROJECT_ID = "[your-project-id]" #@param {type:"string"} \nasdf',
variable_name="PROJECT_ID",
variable_value="sample-project",
)
assert (
new_content
== 'asdf\nPROJECT_ID = "sample-project" #@param {type:"string"} \nasdf'
)
def test_update_value_single_quotes():
new_content = UpdateNotebookVariables.get_updated_value(
content="PROJECT_ID = '[your-project-id]'",
variable_name="PROJECT_ID",
variable_value="sample-project",
)
assert new_content == "PROJECT_ID = 'sample-project'"
def test_update_value_avoidance():
new_content = UpdateNotebookVariables.get_updated_value(
content="PROJECT_ID = shell_output[0] ",
variable_name="PROJECT_ID",
variable_value="sample-project",
)
assert new_content == "PROJECT_ID = shell_output[0] "
def test_region():
new_content = UpdateNotebookVariables.get_updated_value(
content='REGION = "[your-region]" # @param {type:"string"}',
variable_name="REGION",
variable_value="us-central1",
)
assert new_content == 'REGION = "us-central1" # @param {type:"string"}'
def test_region_equal_equals_ignore():
# Tests that == is ignored
new_content = UpdateNotebookVariables.get_updated_value(
content='REGION == "[your-region]" # @param {type:"string"}',
variable_name="REGION",
variable_value="us-central1",
)
assert new_content == 'REGION == "[your-region]" # @param {type:"string"}'
def test_service_account():
# Tests that == is ignored
new_content = UpdateNotebookVariables.get_updated_value(
content='SERVICE_ACCOUNT = "[your-service-account]" # @param {type:"string"}',
variable_name="SERVICE_ACCOUNT",
variable_value="12345-compute@developer.gserviceaccount.com",
)
assert (
new_content
== 'SERVICE_ACCOUNT = "12345-compute@developer.gserviceaccount.com" # @param {type:"string"}'
)
+1 -27
View File
@@ -3,7 +3,7 @@ import subprocess
import tarfile
import uuid
from datetime import datetime
from typing import Optional, Union
from typing import Optional
from google.auth import credentials as auth_credentials
from google.cloud import storage
@@ -58,29 +58,3 @@ def archive_code_and_upload(staging_bucket: str):
print(f"Uploaded source code archive to {source_archived_file_gcs}")
return source_archived_file_gcs
def download_blob_into_memory(
bucket_name: str, blob_name: str, download_as_text: Optional[bool] = False
) -> Union[bytes, str]:
"""
Downloads a blob into memory as byte or as text if
download_as_text is set to True.
"""
storage_client = storage.Client()
bucket = storage_client.bucket(bucket_name)
# Construct a client side representation of a blob.
blob = bucket.blob(blob_name)
# Download the blob content
if download_as_text:
contents = blob.download_as_text()
else:
contents = blob.download_as_bytes()
print(f"Downloaded storage object {blob_name} from bucket {bucket_name}.")
return contents
-20
View File
@@ -1,20 +0,0 @@
# To use this image, run this command with the desired notebook args from the top-level vertex-ai-samples directory:
# 1. To lint all changed notebooks:
# docker run -v ${PWD}:/setup/app gcr.io/python-docs-samples-tests/notebook_linter:latest
# 2. To lint specific notebooks:
# docker run -v ${PWD}:/setup/app gcr.io/python-docs-samples-tests/notebook_linter:latest notebooks/1.ipynb notebooks/2.ipynb
FROM python:3.10
WORKDIR setup
COPY ./requirements.txt .
COPY ./run_linter.sh .
# Install dependencies.
RUN pip install --upgrade pip
RUN pip install -r requirements.txt
WORKDIR app
ENTRYPOINT ["/setup/run_linter.sh"]
+5 -5
View File
@@ -2,9 +2,9 @@ git+https://github.com/tensorflow/docs
ipython
jupyter
nbconvert
black==23.3.0
pyupgrade==3.4.0
isort==5.12.0
flake8==6.0.0
nbqa==1.7.0
black==22.6.0
pyupgrade==2.34.0
isort==5.10.1
flake8==4.0.1
nbqa==1.4.0
+4 -14
View File
@@ -47,22 +47,12 @@ done
echo "Test mode: $is_test"
# Read in user-provided notebooks
notebooks=()
for arg in "$@"; do
if [[ $arg == *.ipynb ]]; then
notebooks+=("$arg")
fi
done
# Only check notebooks in test folders modified in this pull request.
# Note: Use process substitution to persist the data in the array
if [ ${#notebooks[@]} -eq 0 ]; then
echo "Checking for changed notebooked using git"
while read -r file || [ -n "$line" ]; do
notebooks+=("$file")
done < <(git diff --name-only main... | grep '\.ipynb$')
fi
notebooks=()
while read -r file || [ -n "$line" ]; do
notebooks+=("$file")
done < <(git diff --name-only main... | grep '\.ipynb$')
problematic_notebooks=()
if [ ${#notebooks[@]} -gt 0 ]; then
+5 -3
View File
@@ -44,10 +44,12 @@ Finally, run this code block to check for errors. Each step will attempt to
automatically fix any issues. If the fixes can't be performed automatically,
then you will need to manually address them before submitting your PR.
Note: For official, only submit one notebook per PR.
```shell
docker run -v ${PWD}:/setup/app gcr.io/cloud-devrel-public-resources/notebook_linter:latest your_notebook
nbqa black "$notebook"
nbqa pyupgrade "$notebook"
nbqa isort "$notebook"
nbqa flake8 "$notebook" --extend-ignore=W391,E501,F821,E402,F404,W503,E203,E722,W293,W291
python3 -m tensorflow_docs.tools.nbfmt --remove_outputs "$notebook"
```
## Code Reviews
-4
View File
@@ -6,7 +6,3 @@
/sklearn_text_classification_from_script_using_vertex_sdk @maxhardt
/pluto_on_workbench @wkharold
/cpr-examples @samthrasher
/Train_tabular_models_with_many_frameworks_and_import_to_Vertex_AI_using_Pipelines @Ark-kun
/pipeline_components @Ark-kun
/pipeline_components/image_ml_model_training @lakeyk
/prediction_featurestore_integration @googleapis/vertex-prediction-team
@@ -1,83 +0,0 @@
name: Train tabular classification logistic regression model using Scikit learn pipeline
metadata:
annotations:
author: Alexey Volkov <alexey.volkov@ark-kun.com>
canonical_location: https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/samples/Google_Cloud_Vertex_AI/Train_tabular_classification_logistic_regression_model_using_Scikit_learn_and_import_to_Vertex_AI/pipeline.component.yaml
sdk: https://cloud-pipelines.net/pipeline-editor/
implementation:
graph:
tasks:
Download from GCS:
componentRef:
digest: 4175c9ff143cb8cc75d05451c0a0ebdf5a0d6d020816e29f5e9cefbb7d56f241
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/27a5ea25e849c9e8c0cb6ed65518bc3ece259aaf/components/google-cloud/storage/download/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
GCS path: gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv
annotations:
editor.position: '{"x":40,"y":40,"width":180,"height":40}'
Select columns using Pandas on CSV data:
componentRef:
digest: 9b9500f461c1d04f1e48992de9138db14a6800f23649d73048673d5ea6dc56ad
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/8c78aae096806cff3bc331a40566f42f5c3e9d4b/components/pandas/Select_columns/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: Data
taskId: Download from GCS
column_names: '["tips", "trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"]'
annotations:
editor.position: '{"x":40,"y":140,"width":180,"height":54}'
Fill all missing values using Pandas on CSV data:
componentRef:
digest: a1b0c29a4615f2e3652aa5d31b9255fa15700e146627c755f8fc172f82e71af7
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/23405971f5f16a41b16c343129b893c52e4d1d48/components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Select columns using Pandas on CSV data
type: CSV
replacement_value: '0'
annotations:
editor.position: '{"x":40,"y":250,"width":180,"height":54}'
Binarize column using Pandas on CSV data:
componentRef:
digest: d699afd4d7cae862708717cc160f4394ed0c04e536e9515923ef1e8865f01d44
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/1e2558325f4c708aca75827c8acc13d230ee7e9f/components/pandas/Binarize_column/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Fill all missing values using Pandas on CSV data
type: CSV
column_name: tips
predicate: '> 0'
new_column_name: class
annotations:
editor.position: '{"x":40,"y":380,"width":180,"height":54}'
Train logistic regression model using scikit learn from CSV:
componentRef:
digest: a864625a822e4b1c8ef6fe4ae1454fd90f15438f70a6712bb4c30e0dda4d35b7
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/cb44b75c9c062fcc40c2b905b2024b4493dbc62b/components/ML_frameworks/Scikit_learn/Train_logistic_regression_model/from_CSV/component.yaml
arguments:
dataset:
taskOutput:
outputName: transformed_table
taskId: Binarize column using Pandas on CSV data
type: CSV
label_column_name: class
annotations:
editor.position: '{"x":40,"y":510,"width":180,"height":70}'
Upload Scikit learn pickle model to Google Cloud Vertex AI:
componentRef:
digest: 81c91c8d7d21ec97e0872f669d68bd89edea87279d703685db54aa94743bebcd
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/c6a8b67d1ada2cc17665c99ff6b410df588bee28/components/google-cloud/Vertex_AI/Models/Upload_Scikit-learn_pickle_model/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
model:
taskOutput:
outputName: model
taskId: Train logistic regression model using scikit learn from CSV
type: ScikitLearnPickleModel
annotations:
editor.position: '{"x":40,"y":660,"width":180,"height":70}'
outputValues: {}
@@ -1,73 +0,0 @@
# python3 -m pip install "kfp<2.0.0" "google-cloud-aiplatform>=1.16.0" --upgrade --quiet
from kfp import components
# %% Loading components
download_from_gcs_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/storage/download/component.yaml")
select_columns_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Select_columns/in_CSV_format/component.yaml")
fill_all_missing_values_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml")
binarize_column_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Binarize_column/in_CSV_format/component.yaml")
train_logistic_regression_model_using_scikit_learn_from_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/1f5cf6e06409b704064b2086c0a705e4e6b4fcde/community-content/pipeline_components/ML_frameworks/Scikit_learn/Train_logistic_regression_model/from_CSV/component.yaml")
upload_Scikit_learn_pickle_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_Scikit-learn_pickle_model/component.yaml")
deploy_model_to_endpoint_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Deploy_to_endpoint/component.yaml")
# %% Pipeline definition
def train_tabular_classification_logistic_regression_model_using_Scikit_learn_pipeline():
dataset_gcs_uri = "gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv"
feature_columns = ["trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"] # Excluded "trip_total"
label_column = "tips"
# Deploying the model might incur additional costs over time
deploy_model = False
classification_label_column = "class"
all_columns = [label_column] + feature_columns
training_data = download_from_gcs_op(
gcs_path=dataset_gcs_uri
).outputs["Data"]
training_data = select_columns_using_Pandas_on_CSV_data_op(
table=training_data,
column_names=all_columns,
).outputs["transformed_table"]
# Cleaning the NaN values.
training_data = fill_all_missing_values_using_Pandas_on_CSV_data_op(
table=training_data,
replacement_value="0",
#replacement_type_name="float",
).outputs["transformed_table"]
classification_training_data = binarize_column_using_Pandas_on_CSV_data_op(
table=training_data,
column_name=label_column,
predicate="> 0",
new_column_name=classification_label_column,
).outputs["transformed_table"]
model = train_logistic_regression_model_using_scikit_learn_from_CSV_op(
dataset=classification_training_data,
label_column_name=classification_label_column,
# Optional:
#penalty="l2",
#solver="lbfgs",
#max_iterations=100,
#multi_class_mode="auto",
#random_seed=0,
).outputs["model"]
vertex_model_name = upload_Scikit_learn_pickle_model_to_Google_Cloud_Vertex_AI_op(
model=model,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
sklearn_vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=vertex_model_name,
).outputs["endpoint_name"]
pipeline_func = train_tabular_classification_logistic_regression_model_using_Scikit_learn_pipeline
# %% Pipeline submission
if __name__ == '__main__':
from google.cloud import aiplatform
aiplatform.PipelineJob.from_pipeline_func(pipeline_func=pipeline_func).submit()
@@ -1,114 +0,0 @@
name: Train tabular classification model using PyTorch pipeline
metadata:
annotations:
author: Alexey Volkov <alexey.volkov@ark-kun.com>
canonical_location: https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/samples/Google_Cloud_Vertex_AI/Train_tabular_classification_model_using_PyTorch_and_import_to_Vertex_AI/pipeline.component.yaml
sdk: https://cloud-pipelines.net/pipeline-editor/
implementation:
graph:
tasks:
Download from GCS:
componentRef:
digest: 4175c9ff143cb8cc75d05451c0a0ebdf5a0d6d020816e29f5e9cefbb7d56f241
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/27a5ea25e849c9e8c0cb6ed65518bc3ece259aaf/components/google-cloud/storage/download/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
GCS path: gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv
annotations:
editor.position: '{"x":240,"y":40,"width":180,"height":40}'
Select columns using Pandas on CSV data:
componentRef:
digest: 9b9500f461c1d04f1e48992de9138db14a6800f23649d73048673d5ea6dc56ad
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/8c78aae096806cff3bc331a40566f42f5c3e9d4b/components/pandas/Select_columns/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: Data
taskId: Download from GCS
column_names: '["tips", "trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"]'
annotations:
editor.position: '{"x":240,"y":140,"width":180,"height":54}'
Fill all missing values using Pandas on CSV data:
componentRef:
digest: a1b0c29a4615f2e3652aa5d31b9255fa15700e146627c755f8fc172f82e71af7
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/23405971f5f16a41b16c343129b893c52e4d1d48/components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Select columns using Pandas on CSV data
type: CSV
replacement_value: '0'
annotations:
editor.position: '{"x":240,"y":250,"width":180,"height":54}'
Create fully connected pytorch network:
componentRef:
digest: d03d8248fd358a0275ec33568ee7dd7dce576cc112b09dfafe2651e4d97e04a9
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/1a2ef3eeb77bc278f33cad0dd29008ea2431e191/components/PyTorch/Create_fully_connected_network/component.yaml
arguments:
input_size: '7'
hidden_layer_sizes: '[10]'
activation_name: elu
output_activation_name: sigmoid
annotations:
editor.position: '{"x":40,"y":360,"width":180,"height":54}'
Binarize column using Pandas on CSV data:
componentRef:
digest: d699afd4d7cae862708717cc160f4394ed0c04e536e9515923ef1e8865f01d44
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/1e2558325f4c708aca75827c8acc13d230ee7e9f/components/pandas/Binarize_column/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Fill all missing values using Pandas on CSV data
type: CSV
column_name: tips
predicate: ' > 0'
new_column_name: class
annotations:
editor.position: '{"x":240,"y":360,"width":180,"height":54}'
Train pytorch model from csv:
componentRef:
digest: 40f3185eb61e9727f41a4e0c05dd3d3b44bd802aa0f378cfc31756560033949a
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/d8c4cf5e6403bc65bcf8d606e6baf87e2528a3dc/components/PyTorch/Train_PyTorch_model/from_CSV/component.yaml
arguments:
model:
taskOutput:
outputName: model
taskId: Create fully connected pytorch network
type: PyTorchScriptModule
training_data:
taskOutput:
outputName: transformed_table
taskId: Binarize column using Pandas on CSV data
type: CSV
label_column_name: class
loss_function_name: binary_cross_entropy
annotations:
editor.position: '{"x":240,"y":490,"width":180,"height":40}'
Create PyTorch Model Archive with base handler:
componentRef:
digest: 8298b5ee1b0f0879f893add4cf352c8dec7cf9e21bb9db134c91a2d046cdb0ec
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/46d51383e6554b7f3ab4fd8cf614d8c2b422fb22/components/PyTorch/Create_PyTorch_Model_Archive/with_base_handler/component.yaml
arguments:
Model:
taskOutput:
outputName: trained_model
taskId: Train pytorch model from csv
type: PyTorchScriptModule
Model name: model
Model version: '1.0'
annotations:
editor.position: '{"x":240,"y":590,"width":180,"height":54}'
Upload PyTorch model archive to Google Cloud Vertex AI:
componentRef:
digest: 4450212fae7b9001482aca7eb78b28413c205506eccf08a04e7754a8dfa99004
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/c6a8b67d1ada2cc17665c99ff6b410df588bee28/components/google-cloud/Vertex_AI/Models/Upload_PyTorch_model_archive/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
model_archive:
taskOutput:
outputName: Model archive
taskId: Create PyTorch Model Archive with base handler
type: PyTorchModelArchive
annotations:
editor.position: '{"x":240,"y":720,"width":180,"height":70}'
outputValues: {}
@@ -1,95 +0,0 @@
# python3 -m pip install "kfp<2.0.0" "google-cloud-aiplatform>=1.16.0" --upgrade --quiet
from kfp import components
# %% Loading components
download_from_gcs_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/storage/download/component.yaml")
select_columns_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Select_columns/in_CSV_format/component.yaml")
fill_all_missing_values_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml")
binarize_column_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Binarize_column/in_CSV_format/component.yaml")
create_fully_connected_pytorch_network_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/PyTorch/Create_fully_connected_network/component.yaml")
train_pytorch_model_from_csv_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/PyTorch/Train_PyTorch_model/from_CSV/component.yaml")
create_pytorch_model_archive_with_base_handler_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/PyTorch/Create_PyTorch_Model_Archive/with_base_handler/component.yaml")
upload_PyTorch_model_archive_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_PyTorch_model_archive/component.yaml")
deploy_model_to_endpoint_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Deploy_to_endpoint/component.yaml")
# %% Pipeline definition
def train_tabular_classification_model_using_PyTorch_pipeline():
dataset_gcs_uri = "gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv"
feature_columns = ["trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"] # Excluded "trip_total"
label_column = "tips"
# Deploying the model might incur additional costs over time
deploy_model = False
classification_label_column = "class"
all_columns = [label_column] + feature_columns
training_data = download_from_gcs_op(
gcs_path=dataset_gcs_uri
).outputs["Data"]
training_data = select_columns_using_Pandas_on_CSV_data_op(
table=training_data,
column_names=all_columns,
).outputs["transformed_table"]
# Cleaning the NaN values.
training_data = fill_all_missing_values_using_Pandas_on_CSV_data_op(
table=training_data,
replacement_value="0",
#replacement_type_name="float",
).outputs["transformed_table"]
classification_training_data = binarize_column_using_Pandas_on_CSV_data_op(
table=training_data,
column_name=label_column,
predicate=" > 0",
new_column_name=classification_label_column,
).outputs["transformed_table"]
network = create_fully_connected_pytorch_network_op(
input_size=len(feature_columns),
# Optional:
hidden_layer_sizes=[10],
activation_name="elu",
output_activation_name="sigmoid",
# output_size=1,
).outputs["model"]
model = train_pytorch_model_from_csv_op(
model=network,
training_data=classification_training_data,
label_column_name=classification_label_column,
loss_function_name="binary_cross_entropy",
# Optional:
#number_of_epochs=1,
#learning_rate=0.1,
#optimizer_name="Adadelta",
#optimizer_parameters={},
#batch_size=32,
#batch_log_interval=100,
#random_seed=0,
).outputs["trained_model"]
model_archive = create_pytorch_model_archive_with_base_handler_op(
model=model,
# Optional:
# model_name="model",
# model_version="1.0",
).outputs["Model archive"]
vertex_model_name = upload_PyTorch_model_archive_to_Google_Cloud_Vertex_AI_op(
model_archive=model_archive,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=vertex_model_name,
).outputs["endpoint_name"]
pipeline_func=train_tabular_classification_model_using_PyTorch_pipeline
# %% Pipeline submission
if __name__ == '__main__':
from google.cloud import aiplatform
aiplatform.PipelineJob.from_pipeline_func(pipeline_func=pipeline_func).submit()
@@ -1,132 +0,0 @@
name: Train tabular classification model using TensorFlow pipeline
metadata:
annotations:
author: Alexey Volkov <alexey.volkov@ark-kun.com>
canonical_location: https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/samples/Google_Cloud_Vertex_AI/Train_tabular_classification_model_using_TensorFlow_and_import_to_Vertex_AI/pipeline.component.yaml
sdk: https://cloud-pipelines.net/pipeline-editor/
implementation:
graph:
tasks:
Download from GCS:
componentRef:
digest: 4175c9ff143cb8cc75d05451c0a0ebdf5a0d6d020816e29f5e9cefbb7d56f241
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arguments:
GCS path: gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv
annotations:
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Select columns using Pandas on CSV data:
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arguments:
table:
taskOutput:
outputName: Data
taskId: Download from GCS
column_names: '["tips", "trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"]'
annotations:
editor.position: '{"x":40,"y":140,"width":180,"height":54}'
Fill all missing values using Pandas on CSV data:
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arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Select columns using Pandas on CSV data
type: CSV
replacement_value: '0'
annotations:
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Binarize column using Pandas on CSV data:
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arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Fill all missing values using Pandas on CSV data
type: CSV
column_name: tips
predicate: ' > 0'
new_column_name: class
annotations:
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arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Binarize column using Pandas on CSV data
type: CSV
fraction_1: '0.8'
annotations:
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Create fully connected tensorflow network:
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arguments:
input_size: '7'
hidden_layer_sizes: '[10]'
activation_name: elu
output_activation_name: sigmoid
annotations:
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Train model using Keras on CSV:
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arguments:
training_data:
taskOutput:
outputName: split_1
taskId: Split rows into subsets
type: CSV
model:
taskOutput:
outputName: model
taskId: Create fully connected tensorflow network
type: TensorflowSavedModel
label_column_name: class
loss_function_name: binary_crossentropy
number_of_epochs: '10'
annotations:
editor.position: '{"x":40,"y":620,"width":180,"height":54}'
Upload Tensorflow model to Google Cloud Vertex AI:
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arguments:
model:
taskOutput:
outputName: trained_model
taskId: Train model using Keras on CSV
type: TensorflowSavedModel
annotations:
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Predict with TensorFlow model on CSV data:
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arguments:
dataset:
taskOutput:
outputName: split_2
taskId: Split rows into subsets
type: CSV
model:
taskOutput:
outputName: trained_model
taskId: Train model using Keras on CSV
type: TensorflowSavedModel
label_column_name: class
annotations:
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outputValues: {}
@@ -1,106 +0,0 @@
# python3 -m pip install "kfp<2.0.0" "google-cloud-aiplatform>=1.16.0" --upgrade --quiet
from kfp import components
# %% Loading components
download_from_gcs_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/storage/download/component.yaml")
select_columns_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Select_columns/in_CSV_format/component.yaml")
fill_all_missing_values_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml")
binarize_column_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Binarize_column/in_CSV_format/component.yaml")
split_rows_into_subsets_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/dataset_manipulation/Split_rows_into_subsets/in_CSV/component.yaml")
create_fully_connected_tensorflow_network_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/tensorflow/Create_fully_connected_network/component.yaml")
train_model_using_Keras_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/tensorflow/Train_model_using_Keras/on_CSV/component.yaml")
predict_with_TensorFlow_model_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/tensorflow/Predict/on_CSV/component.yaml")
upload_Tensorflow_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_Tensorflow_model/component.yaml")
deploy_model_to_endpoint_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Deploy_to_endpoint/component.yaml")
# %% Pipeline definition
def train_tabular_classification_model_using_TensorFlow_pipeline():
dataset_gcs_uri = "gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv"
feature_columns = ["trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"] # Excluded "trip_total"
label_column = "tips"
training_set_fraction = 0.8
# Deploying the model might incur additional costs over time
deploy_model = False
classification_label_column = "class"
all_columns = [label_column] + feature_columns
dataset = download_from_gcs_op(
gcs_path=dataset_gcs_uri
).outputs["Data"]
dataset = select_columns_using_Pandas_on_CSV_data_op(
table=dataset,
column_names=all_columns,
).outputs["transformed_table"]
dataset = fill_all_missing_values_using_Pandas_on_CSV_data_op(
table=dataset,
replacement_value="0",
# # Optional:
# column_names=None, # =[...]
).outputs["transformed_table"]
classification_dataset = binarize_column_using_Pandas_on_CSV_data_op(
table=dataset,
column_name=label_column,
predicate=" > 0",
new_column_name=classification_label_column,
).outputs["transformed_table"]
split_task = split_rows_into_subsets_op(
table=classification_dataset,
fraction_1=training_set_fraction,
)
classification_training_data = split_task.outputs["split_1"]
classification_testing_data = split_task.outputs["split_2"]
network = create_fully_connected_tensorflow_network_op(
input_size=len(feature_columns),
# Optional:
hidden_layer_sizes=[10],
activation_name="elu",
output_activation_name="sigmoid",
# output_size=1,
).outputs["model"]
model = train_model_using_Keras_on_CSV_op(
training_data=classification_training_data,
model=network,
label_column_name=classification_label_column,
# Optional:
loss_function_name="binary_crossentropy",
number_of_epochs=10,
#learning_rate=0.1,
#optimizer_name="Adadelta",
#optimizer_parameters={},
#batch_size=32,
#metric_names=["mean_absolute_error"],
#random_seed=0,
).outputs["trained_model"]
predictions = predict_with_TensorFlow_model_on_CSV_data_op(
dataset=classification_testing_data,
model=model,
# label_column_name needs to be set when doing prediction on a dataset that has labels
label_column_name=classification_label_column,
# Optional:
# batch_size=1000,
).outputs["predictions"]
vertex_model_name = upload_Tensorflow_model_to_Google_Cloud_Vertex_AI_op(
model=model,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=vertex_model_name,
).outputs["endpoint_name"]
pipeline_func = train_tabular_classification_model_using_TensorFlow_pipeline
# %% Pipeline submission
if __name__ == '__main__':
from google.cloud import aiplatform
aiplatform.PipelineJob.from_pipeline_func(pipeline_func=pipeline_func).submit()
@@ -1,115 +0,0 @@
name: Train tabular classification model using XGBoost pipeline
metadata:
annotations:
author: Alexey Volkov <alexey.volkov@ark-kun.com>
canonical_location: https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/samples/Google_Cloud_Vertex_AI/Train_tabular_classification_model_using_XGBoost_and_import_to_Vertex_AI/pipeline.component.yaml
sdk: https://cloud-pipelines.net/pipeline-editor/
implementation:
graph:
tasks:
Download from GCS:
componentRef:
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arguments:
GCS path: gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv
annotations:
editor.position: '{"x":40,"y":40,"width":180,"height":40}'
Select columns using Pandas on CSV data:
componentRef:
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arguments:
table:
taskOutput:
outputName: Data
taskId: Download from GCS
column_names: '["tips", "trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"]'
annotations:
editor.position: '{"x":40,"y":140,"width":180,"height":54}'
Fill all missing values using Pandas on CSV data:
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arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Select columns using Pandas on CSV data
type: CSV
replacement_value: '0'
annotations:
editor.position: '{"x":40,"y":250,"width":180,"height":54}'
Binarize column using Pandas on CSV data:
componentRef:
digest: d699afd4d7cae862708717cc160f4394ed0c04e536e9515923ef1e8865f01d44
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/1e2558325f4c708aca75827c8acc13d230ee7e9f/components/pandas/Binarize_column/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Fill all missing values using Pandas on CSV data
type: CSV
column_name: tips
predicate: '> 0'
new_column_name: class
annotations:
editor.position: '{"x":40,"y":380,"width":180,"height":54}'
Split rows into subsets:
componentRef:
digest: a609c3c9196484290f24a1174955f95b27f07a7b458aa5cb8cde28866cb2cb46
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arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Binarize column using Pandas on CSV data
type: CSV
fraction_1: '0.8'
annotations:
editor.position: '{"x":170,"y":510,"width":180,"height":40}'
Train XGBoost model on CSV:
componentRef:
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url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/58d3a47f904f32a64af8403330ba7e2134cae46d/components/XGBoost/Train/component.yaml
arguments:
training_data:
taskOutput:
outputName: split_1
taskId: Split rows into subsets
type: CSV
label_column_name: class
objective: binary:logistic
annotations:
editor.position: '{"x":40,"y":630,"width":180,"height":40}'
Upload XGBoost model to Google Cloud Vertex AI:
componentRef:
digest: 5a5a273c403670743820986c03a4175b7cb4595a556524fefcce403656286977
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/c6a8b67d1ada2cc17665c99ff6b410df588bee28/components/google-cloud/Vertex_AI/Models/Upload_XGBoost_model/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
model:
taskOutput:
outputName: model
taskId: Train XGBoost model on CSV
type: XGBoostModel
annotations:
editor.position: '{"x":40,"y":750,"width":180,"height":54}'
Xgboost predict on CSV:
componentRef:
digest: 0876233a0c7306fefec188bd70f059b46d1fb5aa57be231799570e3bbbdd0d95
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/4694ec97baccf59284c2a1db4aa2250c22291eab/components/XGBoost/Predict/component.yaml
arguments:
data:
taskOutput:
outputName: split_2
taskId: Split rows into subsets
type: CSV
model:
taskOutput:
outputName: model
taskId: Train XGBoost model on CSV
type: XGBoostModel
label_column_name: class
annotations:
editor.position: '{"x":240,"y":750,"width":180,"height":40}'
outputValues: {}
@@ -1,94 +0,0 @@
# python3 -m pip install "kfp<2.0.0" "google-cloud-aiplatform>=1.16.0" --upgrade --quiet
from kfp import components
# %% Loading components
download_from_gcs_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/storage/download/component.yaml")
select_columns_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Select_columns/in_CSV_format/component.yaml")
fill_all_missing_values_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml")
binarize_column_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Binarize_column/in_CSV_format/component.yaml")
split_rows_into_subsets_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/dataset_manipulation/Split_rows_into_subsets/in_CSV/component.yaml")
train_XGBoost_model_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/XGBoost/Train/component.yaml")
xgboost_predict_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/XGBoost/Predict/component.yaml")
upload_XGBoost_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_XGBoost_model/component.yaml")
deploy_model_to_endpoint_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Deploy_to_endpoint/component.yaml")
# %% Pipeline definition
def train_tabular_classification_model_using_XGBoost_pipeline():
dataset_gcs_uri = "gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv"
feature_columns = ["trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"] # Excluded "trip_total"
label_column = "tips"
training_set_fraction = 0.8
# Deploying the model might incur additional costs over time
deploy_model = False
classification_label_column = "class"
all_columns = [label_column] + feature_columns
dataset = download_from_gcs_op(
gcs_path=dataset_gcs_uri
).outputs["Data"]
dataset = select_columns_using_Pandas_on_CSV_data_op(
table=dataset,
column_names=all_columns,
).outputs["transformed_table"]
dataset = fill_all_missing_values_using_Pandas_on_CSV_data_op(
table=dataset,
replacement_value="0",
# # Optional:
# column_names=None, # =[...]
).outputs["transformed_table"]
classification_dataset = binarize_column_using_Pandas_on_CSV_data_op(
table=dataset,
column_name=label_column,
predicate="> 0",
new_column_name=classification_label_column,
).outputs["transformed_table"]
split_task = split_rows_into_subsets_op(
table=classification_dataset,
fraction_1=training_set_fraction,
)
classification_training_data = split_task.outputs["split_1"]
classification_testing_data = split_task.outputs["split_2"]
model = train_XGBoost_model_on_CSV_op(
training_data=classification_training_data,
label_column_name=classification_label_column,
objective="binary:logistic",
# Optional:
#starting_model=None,
#num_iterations=10,
#booster_params={},
#booster="gbtree",
#learning_rate=0.3,
#min_split_loss=0,
#max_depth=6,
).outputs["model"]
# Predicting on the testing data
predictions = xgboost_predict_on_CSV_op(
data=classification_testing_data,
model=model,
# label_column needs to be set when doing prediction on a dataset that has labels
label_column_name=classification_label_column,
).outputs["predictions"]
vertex_model_name = upload_XGBoost_model_to_Google_Cloud_Vertex_AI_op(
model=model,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=vertex_model_name,
).outputs["endpoint_name"]
pipeline_func = train_tabular_classification_model_using_XGBoost_pipeline
# %% Pipeline submission
if __name__ == '__main__':
from google.cloud import aiplatform
aiplatform.PipelineJob.from_pipeline_func(pipeline_func=pipeline_func).submit()
@@ -1,257 +0,0 @@
name: Train tabular classification model using all frameworks pipeline
metadata:
annotations:
author: Alexey Volkov <alexey.volkov@ark-kun.com>
canonical_location: https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/samples/Google_Cloud_Vertex_AI/Train_tabular_classification_model_using_all_frameworks_and_import_to_Vertex_AI/pipeline.component.yaml
sdk: https://cloud-pipelines.net/pipeline-editor/
implementation:
graph:
tasks:
Download from GCS:
componentRef:
digest: 4175c9ff143cb8cc75d05451c0a0ebdf5a0d6d020816e29f5e9cefbb7d56f241
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/27a5ea25e849c9e8c0cb6ed65518bc3ece259aaf/components/google-cloud/storage/download/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
GCS path: gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv
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Select columns using Pandas on CSV data:
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arguments:
table:
taskOutput:
outputName: Data
taskId: Download from GCS
column_names: '["tips", "trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"]'
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Fill all missing values using Pandas on CSV data:
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arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Select columns using Pandas on CSV data
type: CSV
replacement_value: '0'
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Binarize column using Pandas on CSV data:
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arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Fill all missing values using Pandas on CSV data
type: CSV
column_name: tips
predicate: ' > 0'
new_column_name: class
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Split rows into subsets:
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arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Binarize column using Pandas on CSV data
type: CSV
fraction_1: '0.8'
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Create fully connected pytorch network:
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arguments:
input_size: '7'
hidden_layer_sizes: '[10]'
activation_name: elu
output_activation_name: sigmoid
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Create fully connected tensorflow network:
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arguments:
input_size: '7'
hidden_layer_sizes: '[10]'
activation_name: elu
output_activation_name: sigmoid
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Train model using Keras on CSV:
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arguments:
training_data:
taskOutput:
outputName: split_1
taskId: Split rows into subsets
type: CSV
model:
taskOutput:
outputName: model
taskId: Create fully connected tensorflow network
type: TensorflowSavedModel
label_column_name: class
loss_function_name: binary_crossentropy
number_of_epochs: '10'
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Train pytorch model from csv:
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arguments:
model:
taskOutput:
outputName: model
taskId: Create fully connected pytorch network
type: PyTorchScriptModule
training_data:
taskOutput:
outputName: split_1
taskId: Split rows into subsets
type: CSV
label_column_name: class
loss_function_name: binary_cross_entropy
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Train XGBoost model on CSV:
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arguments:
training_data:
taskOutput:
outputName: split_1
taskId: Split rows into subsets
type: CSV
label_column_name: class
objective: binary:logistic
annotations:
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Train logistic regression model using scikit learn from CSV:
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arguments:
dataset:
taskOutput:
outputName: split_1
taskId: Split rows into subsets
type: CSV
label_column_name: class
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Predict with TensorFlow model on CSV data:
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arguments:
dataset:
taskOutput:
outputName: split_2
taskId: Split rows into subsets
type: CSV
model:
taskOutput:
outputName: trained_model
taskId: Train model using Keras on CSV
type: TensorflowSavedModel
label_column_name: class
annotations:
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Create PyTorch Model Archive with base handler:
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arguments:
Model:
taskOutput:
outputName: trained_model
taskId: Train pytorch model from csv
type: PyTorchScriptModule
Model name: model
Model version: '1.0'
annotations:
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Xgboost predict on CSV:
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arguments:
data:
taskOutput:
outputName: split_2
taskId: Split rows into subsets
type: CSV
model:
taskOutput:
outputName: model
taskId: Train XGBoost model on CSV
type: XGBoostModel
label_column_name: class
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Upload Scikit learn pickle model to Google Cloud Vertex AI:
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arguments:
model:
taskOutput:
outputName: model
taskId: Train logistic regression model using scikit learn from CSV
type: ScikitLearnPickleModel
annotations:
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Upload Tensorflow model to Google Cloud Vertex AI:
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arguments:
model:
taskOutput:
outputName: trained_model
taskId: Train model using Keras on CSV
type: TensorflowSavedModel
annotations:
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Upload PyTorch model archive to Google Cloud Vertex AI:
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arguments:
model_archive:
taskOutput:
outputName: Model archive
taskId: Create PyTorch Model Archive with base handler
type: PyTorchModelArchive
annotations:
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Upload XGBoost model to Google Cloud Vertex AI:
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arguments:
model:
taskOutput:
outputName: model
taskId: Train XGBoost model on CSV
type: XGBoostModel
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outputValues: {}
@@ -1,224 +0,0 @@
# python3 -m pip install "kfp<2.0.0" "google-cloud-aiplatform>=1.16.0" --upgrade --quiet
from kfp import components
# %% Loading components
download_from_gcs_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/storage/download/component.yaml")
select_columns_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Select_columns/in_CSV_format/component.yaml")
fill_all_missing_values_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml")
binarize_column_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Binarize_column/in_CSV_format/component.yaml")
split_rows_into_subsets_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/dataset_manipulation/Split_rows_into_subsets/in_CSV/component.yaml")
# TensorFlow
create_fully_connected_tensorflow_network_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/tensorflow/Create_fully_connected_network/component.yaml")
train_model_using_Keras_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/tensorflow/Train_model_using_Keras/on_CSV/component.yaml")
predict_with_TensorFlow_model_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/tensorflow/Predict/on_CSV/component.yaml")
upload_Tensorflow_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_Tensorflow_model/component.yaml")
# PyTorch
create_fully_connected_pytorch_network_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/PyTorch/Create_fully_connected_network/component.yaml")
train_pytorch_model_from_csv_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/PyTorch/Train_PyTorch_model/from_CSV/component.yaml")
create_pytorch_model_archive_with_base_handler_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/PyTorch/Create_PyTorch_Model_Archive/with_base_handler/component.yaml")
upload_PyTorch_model_archive_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_PyTorch_model_archive/component.yaml")
# XGBoost
train_XGBoost_model_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/XGBoost/Train/component.yaml")
xgboost_predict_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/XGBoost/Predict/component.yaml")
upload_XGBoost_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_XGBoost_model/component.yaml")
# Scikit-learn
#train_linear_regression_model_using_scikit_learn_from_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/1f5cf6e06409b704064b2086c0a705e4e6b4fcde/community-content/pipeline_components/ML_frameworks/Scikit_learn/Train_linear_regression_model/from_CSV/component.yaml")
train_logistic_regression_model_using_scikit_learn_from_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/1f5cf6e06409b704064b2086c0a705e4e6b4fcde/community-content/pipeline_components/ML_frameworks/Scikit_learn/Train_logistic_regression_model/from_CSV/component.yaml")
upload_Scikit_learn_pickle_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_Scikit-learn_pickle_model/component.yaml")
# Vertex AI
deploy_model_to_endpoint_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Deploy_to_endpoint/component.yaml")
# %% Pipeline definition
def train_tabular_classification_model_using_all_frameworks_pipeline():
dataset_gcs_uri = "gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv"
feature_columns = ["trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"] # Excluded "trip_total"
label_column = "tips"
training_set_fraction = 0.8
# Deploying the model might incur additional costs over time
deploy_model = False
classification_label_column = "class"
all_columns = [label_column] + feature_columns
dataset = download_from_gcs_op(
gcs_path=dataset_gcs_uri
).outputs["Data"]
dataset = select_columns_using_Pandas_on_CSV_data_op(
table=dataset,
column_names=all_columns,
).outputs["transformed_table"]
dataset = fill_all_missing_values_using_Pandas_on_CSV_data_op(
table=dataset,
replacement_value="0",
# # Optional:
# column_names=None, # =[...]
).outputs["transformed_table"]
classification_dataset = binarize_column_using_Pandas_on_CSV_data_op(
table=dataset,
column_name=label_column,
predicate=" > 0",
new_column_name=classification_label_column,
).outputs["transformed_table"]
split_task = split_rows_into_subsets_op(
table=classification_dataset,
fraction_1=training_set_fraction,
)
classification_training_data = split_task.outputs["split_1"]
classification_testing_data = split_task.outputs["split_2"]
# TensorFlow
tensorflow_network = create_fully_connected_tensorflow_network_op(
input_size=len(feature_columns),
# Optional:
hidden_layer_sizes=[10],
activation_name="elu",
output_activation_name="sigmoid",
# output_size=1,
).outputs["model"]
tensorflow_model = train_model_using_Keras_on_CSV_op(
training_data=classification_training_data,
model=tensorflow_network,
label_column_name=classification_label_column,
# Optional:
loss_function_name="binary_crossentropy",
number_of_epochs=10,
#learning_rate=0.1,
#optimizer_name="Adadelta",
#optimizer_parameters={},
#batch_size=32,
#metric_names=["mean_absolute_error"],
#random_seed=0,
).outputs["trained_model"]
tensorflow_predictions = predict_with_TensorFlow_model_on_CSV_data_op(
dataset=classification_testing_data,
model=tensorflow_model,
# label_column_name needs to be set when doing prediction on a dataset that has labels
label_column_name=classification_label_column,
# Optional:
# batch_size=1000,
).outputs["predictions"]
tensorflow_vertex_model_name = upload_Tensorflow_model_to_Google_Cloud_Vertex_AI_op(
model=tensorflow_model,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
tensorflow_vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=tensorflow_vertex_model_name,
).outputs["endpoint_name"]
# PyTorch
pytorch_network = create_fully_connected_pytorch_network_op(
input_size=len(feature_columns),
# Optional:
hidden_layer_sizes=[10],
activation_name="elu",
output_activation_name="sigmoid",
# output_size=1,
).outputs["model"]
pytorch_model = train_pytorch_model_from_csv_op(
model=pytorch_network,
training_data=classification_training_data,
label_column_name=classification_label_column,
loss_function_name="binary_cross_entropy",
# Optional:
#number_of_epochs=1,
#learning_rate=0.1,
#optimizer_name="Adadelta",
#optimizer_parameters={},
#batch_size=32,
#batch_log_interval=100,
#random_seed=0,
).outputs["trained_model"]
pytorch_model_archive = create_pytorch_model_archive_with_base_handler_op(
model=pytorch_model,
# Optional:
# model_name="model",
# model_version="1.0",
).outputs["Model archive"]
pytorch_vertex_model_name = upload_PyTorch_model_archive_to_Google_Cloud_Vertex_AI_op(
model_archive=pytorch_model_archive,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
pytorch_vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=pytorch_vertex_model_name,
).outputs["endpoint_name"]
# XGBoost
xgboost_model = train_XGBoost_model_on_CSV_op(
training_data=classification_training_data,
label_column_name=classification_label_column,
objective="binary:logistic",
# Optional:
#starting_model=None,
#num_iterations=10,
#booster_params={},
#booster="gbtree",
#learning_rate=0.3,
#min_split_loss=0,
#max_depth=6,
).outputs["model"]
# Predicting on the testing data
xgboost_predictions = xgboost_predict_on_CSV_op(
data=classification_testing_data,
model=xgboost_model,
# label_column needs to be set when doing prediction on a dataset that has labels
label_column_name=classification_label_column,
).outputs["predictions"]
xgboost_vertex_model_name = upload_XGBoost_model_to_Google_Cloud_Vertex_AI_op(
model=xgboost_model,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
xgboost_vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=xgboost_vertex_model_name,
).outputs["endpoint_name"]
# Scikit-learn
sklearn_model = train_logistic_regression_model_using_scikit_learn_from_CSV_op(
dataset=classification_training_data,
label_column_name=classification_label_column,
# Optional:
#penalty="l2",
#solver="lbfgs",
#max_iterations=100,
#multi_class_mode="auto",
#random_seed=0,
).outputs["model"]
sklearn_vertex_model_name = upload_Scikit_learn_pickle_model_to_Google_Cloud_Vertex_AI_op(
model=sklearn_model,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
sklearn_vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=sklearn_vertex_model_name,
).outputs["endpoint_name"]
pipeline_func=train_tabular_classification_model_using_all_frameworks_pipeline
# %% Pipeline submission
if __name__ == '__main__':
from google.cloud import aiplatform
aiplatform.PipelineJob.from_pipeline_func(pipeline_func=pipeline_func).submit()
@@ -1,68 +0,0 @@
name: Train tabular regression linear model using Scikit learn pipeline
metadata:
annotations:
author: Alexey Volkov <alexey.volkov@ark-kun.com>
canonical_location: https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/samples/Google_Cloud_Vertex_AI/Train_tabular_regression_linear_model_using_Scikit_learn_and_import_to_Vertex_AI/pipeline.component.yaml
sdk: https://cloud-pipelines.net/pipeline-editor/
implementation:
graph:
tasks:
Download from GCS:
componentRef:
digest: 4175c9ff143cb8cc75d05451c0a0ebdf5a0d6d020816e29f5e9cefbb7d56f241
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/27a5ea25e849c9e8c0cb6ed65518bc3ece259aaf/components/google-cloud/storage/download/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
GCS path: gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv
annotations:
editor.position: '{"x":40,"y":40,"width":180,"height":40}'
Select columns using Pandas on CSV data:
componentRef:
digest: 9b9500f461c1d04f1e48992de9138db14a6800f23649d73048673d5ea6dc56ad
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/8c78aae096806cff3bc331a40566f42f5c3e9d4b/components/pandas/Select_columns/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: Data
taskId: Download from GCS
column_names: '["tips", "trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"]'
annotations:
editor.position: '{"x":40,"y":140,"width":180,"height":54}'
Fill all missing values using Pandas on CSV data:
componentRef:
digest: a1b0c29a4615f2e3652aa5d31b9255fa15700e146627c755f8fc172f82e71af7
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/23405971f5f16a41b16c343129b893c52e4d1d48/components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Select columns using Pandas on CSV data
type: CSV
replacement_value: '0'
annotations:
editor.position: '{"x":40,"y":250,"width":180,"height":54}'
Train linear regression model using scikit learn from CSV:
componentRef:
digest: c7fe7912ab0d1fb45d201d452e9ce6be5544e7d8c6d229db7a4b931ff58560f3
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/f807e02b54d4886c65a05f40848fd51c72407f40/components/ML_frameworks/Scikit_learn/Train_linear_regression_model/from_CSV/component.yaml
arguments:
dataset:
taskOutput:
outputName: transformed_table
taskId: Fill all missing values using Pandas on CSV data
type: CSV
label_column_name: tips
annotations:
editor.position: '{"x":40,"y":360,"width":180,"height":54}'
Upload Scikit learn pickle model to Google Cloud Vertex AI:
componentRef:
digest: 81c91c8d7d21ec97e0872f669d68bd89edea87279d703685db54aa94743bebcd
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/c6a8b67d1ada2cc17665c99ff6b410df588bee28/components/google-cloud/Vertex_AI/Models/Upload_Scikit-learn_pickle_model/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
model:
taskOutput:
outputName: model
taskId: Train linear regression model using scikit learn from CSV
type: ScikitLearnPickleModel
annotations:
editor.position: '{"x":40,"y":490,"width":180,"height":70}'
outputValues: {}
@@ -1,57 +0,0 @@
# python3 -m pip install "kfp<2.0.0" "google-cloud-aiplatform>=1.16.0" --upgrade --quiet
from kfp import components
# %% Loading components
download_from_gcs_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/storage/download/component.yaml")
select_columns_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Select_columns/in_CSV_format/component.yaml")
fill_all_missing_values_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml")
train_linear_regression_model_using_scikit_learn_from_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/1f5cf6e06409b704064b2086c0a705e4e6b4fcde/community-content/pipeline_components/ML_frameworks/Scikit_learn/Train_linear_regression_model/from_CSV/component.yaml")
upload_Scikit_learn_pickle_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_Scikit-learn_pickle_model/component.yaml")
deploy_model_to_endpoint_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Deploy_to_endpoint/component.yaml")
# %% Pipeline definition
def train_tabular_regression_linear_model_using_Scikit_learn_pipeline():
dataset_gcs_uri = "gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv"
feature_columns = ["trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"] # Excluded "trip_total"
label_column = "tips"
all_columns = [label_column] + feature_columns
# Deploying the model might incur additional costs over time
deploy_model = False
training_data = download_from_gcs_op(
gcs_path=dataset_gcs_uri
).outputs["Data"]
training_data = select_columns_using_Pandas_on_CSV_data_op(
table=training_data,
column_names=all_columns,
).outputs["transformed_table"]
# Cleaning the NaN values.
training_data = fill_all_missing_values_using_Pandas_on_CSV_data_op(
table=training_data,
replacement_value="0",
#replacement_type_name="float",
).outputs["transformed_table"]
model = train_linear_regression_model_using_scikit_learn_from_CSV_op(
dataset=training_data,
label_column_name=label_column,
).outputs["model"]
vertex_model_name = upload_Scikit_learn_pickle_model_to_Google_Cloud_Vertex_AI_op(
model=model,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
sklearn_vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=vertex_model_name,
).outputs["endpoint_name"]
pipeline_func = train_tabular_regression_linear_model_using_Scikit_learn_pipeline
# %% Pipeline submission
if __name__ == '__main__':
from google.cloud import aiplatform
aiplatform.PipelineJob.from_pipeline_func(pipeline_func=pipeline_func).submit()
@@ -1,97 +0,0 @@
name: Train tabular regression model using PyTorch pipeline
metadata:
annotations:
author: Alexey Volkov <alexey.volkov@ark-kun.com>
canonical_location: https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/samples/Google_Cloud_Vertex_AI/Train_tabular_regression_model_using_PyTorch_and_import_to_Vertex_AI/pipeline.component.yaml
sdk: https://cloud-pipelines.net/pipeline-editor/
implementation:
graph:
tasks:
Download from GCS:
componentRef:
digest: 4175c9ff143cb8cc75d05451c0a0ebdf5a0d6d020816e29f5e9cefbb7d56f241
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/27a5ea25e849c9e8c0cb6ed65518bc3ece259aaf/components/google-cloud/storage/download/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
GCS path: gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv
annotations:
editor.position: '{"x":240,"y":40,"width":180,"height":40}'
Select columns using Pandas on CSV data:
componentRef:
digest: 9b9500f461c1d04f1e48992de9138db14a6800f23649d73048673d5ea6dc56ad
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/8c78aae096806cff3bc331a40566f42f5c3e9d4b/components/pandas/Select_columns/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: Data
taskId: Download from GCS
column_names: '["tips", "trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"]'
annotations:
editor.position: '{"x":240,"y":130,"width":180,"height":54}'
Create fully connected pytorch network:
componentRef:
digest: d03d8248fd358a0275ec33568ee7dd7dce576cc112b09dfafe2651e4d97e04a9
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/1a2ef3eeb77bc278f33cad0dd29008ea2431e191/components/PyTorch/Create_fully_connected_network/component.yaml
arguments:
input_size: '7'
hidden_layer_sizes: '[10]'
activation_name: elu
annotations:
editor.position: '{"x":40,"y":240,"width":180,"height":54}'
Fill all missing values using Pandas on CSV data:
componentRef:
digest: a1b0c29a4615f2e3652aa5d31b9255fa15700e146627c755f8fc172f82e71af7
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/23405971f5f16a41b16c343129b893c52e4d1d48/components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Select columns using Pandas on CSV data
type: CSV
replacement_value: '0'
annotations:
editor.position: '{"x":240,"y":240,"width":180,"height":54}'
Train pytorch model from csv:
componentRef:
digest: 40f3185eb61e9727f41a4e0c05dd3d3b44bd802aa0f378cfc31756560033949a
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/d8c4cf5e6403bc65bcf8d606e6baf87e2528a3dc/components/PyTorch/Train_PyTorch_model/from_CSV/component.yaml
arguments:
model:
taskOutput:
outputName: model
taskId: Create fully connected pytorch network
type: PyTorchScriptModule
training_data:
taskOutput:
outputName: transformed_table
taskId: Fill all missing values using Pandas on CSV data
type: CSV
label_column_name: tips
annotations:
editor.position: '{"x":240,"y":380,"width":180,"height":40}'
Create PyTorch Model Archive with base handler:
componentRef:
digest: 8298b5ee1b0f0879f893add4cf352c8dec7cf9e21bb9db134c91a2d046cdb0ec
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/46d51383e6554b7f3ab4fd8cf614d8c2b422fb22/components/PyTorch/Create_PyTorch_Model_Archive/with_base_handler/component.yaml
arguments:
Model:
taskOutput:
outputName: trained_model
taskId: Train pytorch model from csv
type: PyTorchScriptModule
Model name: model
Model version: '1.0'
annotations:
editor.position: '{"x":240,"y":500,"width":180,"height":54}'
Upload PyTorch model archive to Google Cloud Vertex AI:
componentRef:
digest: 4450212fae7b9001482aca7eb78b28413c205506eccf08a04e7754a8dfa99004
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/c6a8b67d1ada2cc17665c99ff6b410df588bee28/components/google-cloud/Vertex_AI/Models/Upload_PyTorch_model_archive/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
model_archive:
taskOutput:
outputName: Model archive
taskId: Create PyTorch Model Archive with base handler
type: PyTorchModelArchive
annotations:
editor.position: '{"x":240,"y":630,"width":180,"height":70}'
outputValues: {}
@@ -1,85 +0,0 @@
# python3 -m pip install "kfp<2.0.0" "google-cloud-aiplatform>=1.16.0" --upgrade --quiet
from kfp import components
# %% Loading components
download_from_gcs_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/storage/download/component.yaml")
select_columns_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Select_columns/in_CSV_format/component.yaml")
fill_all_missing_values_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml")
create_fully_connected_pytorch_network_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/PyTorch/Create_fully_connected_network/component.yaml")
train_pytorch_model_from_csv_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/PyTorch/Train_PyTorch_model/from_CSV/component.yaml")
create_pytorch_model_archive_with_base_handler_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/PyTorch/Create_PyTorch_Model_Archive/with_base_handler/component.yaml")
upload_PyTorch_model_archive_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_PyTorch_model_archive/component.yaml")
deploy_model_to_endpoint_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Deploy_to_endpoint/component.yaml")
# %% Pipeline definition
def train_tabular_regression_model_using_PyTorch_pipeline():
dataset_gcs_uri = "gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv"
feature_columns = ["trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"] # Excluded "trip_total"
label_column = "tips"
all_columns = [label_column] + feature_columns
# Deploying the model might incur additional costs over time
deploy_model = False
training_data = download_from_gcs_op(
gcs_path=dataset_gcs_uri
).outputs["Data"]
training_data = select_columns_using_Pandas_on_CSV_data_op(
table=training_data,
column_names=all_columns,
).outputs["transformed_table"]
# Cleaning the NaN values.
training_data = fill_all_missing_values_using_Pandas_on_CSV_data_op(
table=training_data,
replacement_value="0",
#replacement_type_name="float",
).outputs["transformed_table"]
network = create_fully_connected_pytorch_network_op(
input_size=len(feature_columns),
# Optional:
hidden_layer_sizes=[10],
activation_name="elu",
# output_activation_name=None,
# output_size=1,
).outputs["model"]
model = train_pytorch_model_from_csv_op(
model=network,
training_data=training_data,
label_column_name=label_column,
# Optional:
#loss_function_name="mse_loss",
#number_of_epochs=1,
#learning_rate=0.1,
#optimizer_name="Adadelta",
#optimizer_parameters={},
#batch_size=32,
#batch_log_interval=100,
#random_seed=0,
).outputs["trained_model"]
model_archive = create_pytorch_model_archive_with_base_handler_op(
model=model,
# Optional:
# model_name="model",
# model_version="1.0",
).outputs["Model archive"]
vertex_model_name = upload_PyTorch_model_archive_to_Google_Cloud_Vertex_AI_op(
model_archive=model_archive,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=vertex_model_name,
).outputs["endpoint_name"]
pipeline_func=train_tabular_regression_model_using_PyTorch_pipeline
# %% Pipeline submission
if __name__ == '__main__':
from google.cloud import aiplatform
aiplatform.PipelineJob.from_pipeline_func(pipeline_func=pipeline_func).submit()
@@ -1,116 +0,0 @@
name: Train tabular regression model using Tensorflow pipeline
metadata:
annotations:
author: Alexey Volkov <alexey.volkov@ark-kun.com>
canonical_location: https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/samples/Google_Cloud_Vertex_AI/Train_tabular_regression_model_using_TensorFlow_and_import_to_Vertex_AI/pipeline.component.yaml
sdk: https://cloud-pipelines.net/pipeline-editor/
implementation:
graph:
tasks:
Download from GCS:
componentRef:
digest: 4175c9ff143cb8cc75d05451c0a0ebdf5a0d6d020816e29f5e9cefbb7d56f241
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/27a5ea25e849c9e8c0cb6ed65518bc3ece259aaf/components/google-cloud/storage/download/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
GCS path: gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv
annotations:
editor.position: '{"x":40,"y":40,"width":180,"height":40}'
Select columns using Pandas on CSV data:
componentRef:
digest: 9b9500f461c1d04f1e48992de9138db14a6800f23649d73048673d5ea6dc56ad
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/8c78aae096806cff3bc331a40566f42f5c3e9d4b/components/pandas/Select_columns/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: Data
taskId: Download from GCS
column_names: '["tips", "trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"]'
annotations:
editor.position: '{"x":40,"y":140,"width":180,"height":54}'
Fill all missing values using Pandas on CSV data:
componentRef:
digest: a1b0c29a4615f2e3652aa5d31b9255fa15700e146627c755f8fc172f82e71af7
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/23405971f5f16a41b16c343129b893c52e4d1d48/components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Select columns using Pandas on CSV data
type: CSV
replacement_value: '0'
annotations:
editor.position: '{"x":40,"y":250,"width":180,"height":54}'
Split rows into subsets:
componentRef:
digest: a609c3c9196484290f24a1174955f95b27f07a7b458aa5cb8cde28866cb2cb46
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/daae5a4abaa35e44501818b1534ed7827d7da073/components/dataset_manipulation/Split_rows_into_subsets/in_CSV/component.yaml
arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Fill all missing values using Pandas on CSV data
type: CSV
fraction_1: '0.8'
annotations:
editor.position: '{"x":170,"y":380,"width":180,"height":40}'
Create fully connected tensorflow network:
componentRef:
digest: bfcafbc5ce711b1f69cabf1338212d10d50136a73db9f9f7c984de7b80b4bfb0
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/9ca0f9eecf5f896f65b8538bbd809747052617d1/components/tensorflow/Create_fully_connected_network/component.yaml
arguments:
input_size: '7'
hidden_layer_sizes: '[10]'
activation_name: elu
annotations:
editor.position: '{"x":370,"y":380,"width":180,"height":54}'
Train model using Keras on CSV:
componentRef:
digest: 42ae60c889034dbad74815653e95b4f7d576b5f47f803173e8679c7b54984609
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/c504a4010348c50eaaf6d4337586ccc008f4dcef/components/tensorflow/Train_model_using_Keras/on_CSV/component.yaml
arguments:
training_data:
taskOutput:
outputName: split_1
taskId: Split rows into subsets
type: CSV
model:
taskOutput:
outputName: model
taskId: Create fully connected tensorflow network
type: TensorflowSavedModel
label_column_name: tips
number_of_epochs: '10'
metric_names: '["mean_absolute_error"]'
annotations:
editor.position: '{"x":40,"y":500,"width":180,"height":54}'
Upload Tensorflow model to Google Cloud Vertex AI:
componentRef:
digest: 2e45263ff640b1a688e359b6936e27a81b2407749a84f340af2aa5547e0cb92c
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/c6a8b67d1ada2cc17665c99ff6b410df588bee28/components/google-cloud/Vertex_AI/Models/Upload_Tensorflow_model/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
model:
taskOutput:
outputName: trained_model
taskId: Train model using Keras on CSV
type: TensorflowSavedModel
annotations:
editor.position: '{"x":40,"y":630,"width":180,"height":54}'
Predict with TensorFlow model on CSV data:
componentRef:
digest: 921bb1563e93a78233b8acceab87055b9154ccf5595d056028cf0396ca224cd4
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/59c759ce6f543184e30db6817d2a703879bc0f39/components/tensorflow/Predict/on_CSV/component.yaml
arguments:
dataset:
taskOutput:
outputName: split_2
taskId: Split rows into subsets
type: CSV
model:
taskOutput:
outputName: trained_model
taskId: Train model using Keras on CSV
type: TensorflowSavedModel
label_column_name: tips
annotations:
editor.position: '{"x":240,"y":630,"width":180,"height":54}'
outputValues: {}
@@ -1,97 +0,0 @@
# python3 -m pip install "kfp<2.0.0" "google-cloud-aiplatform>=1.16.0" --upgrade --quiet
from kfp import components
# %% Loading components
download_from_gcs_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/storage/download/component.yaml")
select_columns_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Select_columns/in_CSV_format/component.yaml")
fill_all_missing_values_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml")
split_rows_into_subsets_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/dataset_manipulation/Split_rows_into_subsets/in_CSV/component.yaml")
create_fully_connected_tensorflow_network_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/tensorflow/Create_fully_connected_network/component.yaml")
train_model_using_Keras_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/tensorflow/Train_model_using_Keras/on_CSV/component.yaml")
predict_with_TensorFlow_model_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/tensorflow/Predict/on_CSV/component.yaml")
upload_Tensorflow_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_Tensorflow_model/component.yaml")
deploy_model_to_endpoint_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Deploy_to_endpoint/component.yaml")
# %% Pipeline definition
def train_tabular_regression_model_using_Tensorflow_pipeline():
dataset_gcs_uri = "gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv"
feature_columns = ["trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"] # Excluded "trip_total"
label_column = "tips"
training_set_fraction = 0.8
# Deploying the model might incur additional costs over time
deploy_model = False
all_columns = [label_column] + feature_columns
dataset = download_from_gcs_op(
gcs_path=dataset_gcs_uri
).outputs["Data"]
dataset = select_columns_using_Pandas_on_CSV_data_op(
table=dataset,
column_names=all_columns,
).outputs["transformed_table"]
dataset = fill_all_missing_values_using_Pandas_on_CSV_data_op(
table=dataset,
replacement_value="0",
# # Optional:
# column_names=None, # =[...]
).outputs["transformed_table"]
split_task = split_rows_into_subsets_op(
table=dataset,
fraction_1=training_set_fraction,
)
training_data = split_task.outputs["split_1"]
testing_data = split_task.outputs["split_2"]
network = create_fully_connected_tensorflow_network_op(
input_size=len(feature_columns),
# Optional:
hidden_layer_sizes=[10],
activation_name="elu",
# output_activation_name=None,
# output_size=1,
).outputs["model"]
model = train_model_using_Keras_on_CSV_op(
training_data=training_data,
model=network,
label_column_name=label_column,
# Optional:
#loss_function_name="mean_squared_error",
number_of_epochs=10,
#learning_rate=0.1,
#optimizer_name="Adadelta",
#optimizer_parameters={},
#batch_size=32,
metric_names=["mean_absolute_error"],
#random_seed=0,
).outputs["trained_model"]
predictions = predict_with_TensorFlow_model_on_CSV_data_op(
dataset=testing_data,
model=model,
# label_column_name needs to be set when doing prediction on a dataset that has labels
label_column_name=label_column,
# Optional:
# batch_size=1000,
).outputs["predictions"]
vertex_model_name = upload_Tensorflow_model_to_Google_Cloud_Vertex_AI_op(
model=model,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=vertex_model_name,
).outputs["endpoint_name"]
pipeline_func=train_tabular_regression_model_using_Tensorflow_pipeline
# %% Pipeline submission
if __name__ == '__main__':
from google.cloud import aiplatform
aiplatform.PipelineJob.from_pipeline_func(pipeline_func=pipeline_func).submit()
@@ -1,99 +0,0 @@
name: Train tabular regression model using XGBoost pipeline
metadata:
annotations:
author: Alexey Volkov <alexey.volkov@ark-kun.com>
canonical_location: https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/samples/Google_Cloud_Vertex_AI/Train_tabular_regression_model_using_XGBoost_and_import_to_Vertex_AI/pipeline.component.yaml
sdk: https://cloud-pipelines.net/pipeline-editor/
implementation:
graph:
tasks:
Download from GCS:
componentRef:
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arguments:
GCS path: gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv
annotations:
editor.position: '{"x":40,"y":40,"width":180,"height":40}'
Select columns using Pandas on CSV data:
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arguments:
table:
taskOutput:
outputName: Data
taskId: Download from GCS
column_names: '["tips", "trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"]'
annotations:
editor.position: '{"x":40,"y":140,"width":180,"height":54}'
Fill all missing values using Pandas on CSV data:
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arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Select columns using Pandas on CSV data
type: CSV
replacement_value: '0'
annotations:
editor.position: '{"x":40,"y":250,"width":180,"height":54}'
Split rows into subsets:
componentRef:
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arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Fill all missing values using Pandas on CSV data
type: CSV
fraction_1: '0.8'
annotations:
editor.position: '{"x":170,"y":360,"width":180,"height":40}'
Train XGBoost model on CSV:
componentRef:
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url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/58d3a47f904f32a64af8403330ba7e2134cae46d/components/XGBoost/Train/component.yaml
arguments:
training_data:
taskOutput:
outputName: split_1
taskId: Split rows into subsets
type: CSV
label_column_name: tips
annotations:
editor.position: '{"x":40,"y":480,"width":180,"height":40}'
Upload XGBoost model to Google Cloud Vertex AI:
componentRef:
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url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/c6a8b67d1ada2cc17665c99ff6b410df588bee28/components/google-cloud/Vertex_AI/Models/Upload_XGBoost_model/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
model:
taskOutput:
outputName: model
taskId: Train XGBoost model on CSV
type: XGBoostModel
annotations:
editor.position: '{"x":40,"y":600,"width":180,"height":54}'
Xgboost predict on CSV:
componentRef:
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url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/4694ec97baccf59284c2a1db4aa2250c22291eab/components/XGBoost/Predict/component.yaml
arguments:
data:
taskOutput:
outputName: split_2
taskId: Split rows into subsets
type: CSV
model:
taskOutput:
outputName: model
taskId: Train XGBoost model on CSV
type: XGBoostModel
label_column_name: tips
annotations:
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outputValues: {}
@@ -1,85 +0,0 @@
# python3 -m pip install "kfp<2.0.0" "google-cloud-aiplatform>=1.16.0" --upgrade --quiet
from kfp import components
# %% Loading components
download_from_gcs_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/storage/download/component.yaml")
select_columns_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Select_columns/in_CSV_format/component.yaml")
fill_all_missing_values_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml")
split_rows_into_subsets_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/dataset_manipulation/Split_rows_into_subsets/in_CSV/component.yaml")
train_XGBoost_model_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/XGBoost/Train/component.yaml")
xgboost_predict_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/XGBoost/Predict/component.yaml")
upload_XGBoost_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_XGBoost_model/component.yaml")
deploy_model_to_endpoint_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Deploy_to_endpoint/component.yaml")
# %% Pipeline definition
def train_tabular_regression_model_using_XGBoost_pipeline():
dataset_gcs_uri = "gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv"
feature_columns = ["trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"] # Excluded "trip_total"
label_column = "tips"
training_set_fraction = 0.8
# Deploying the model might incur additional costs over time
deploy_model = False
all_columns = [label_column] + feature_columns
dataset = download_from_gcs_op(
gcs_path=dataset_gcs_uri
).outputs["Data"]
dataset = select_columns_using_Pandas_on_CSV_data_op(
table=dataset,
column_names=all_columns,
).outputs["transformed_table"]
dataset = fill_all_missing_values_using_Pandas_on_CSV_data_op(
table=dataset,
replacement_value="0",
# # Optional:
# column_names=None, # =[...]
).outputs["transformed_table"]
split_task = split_rows_into_subsets_op(
table=dataset,
fraction_1=training_set_fraction,
)
training_data = split_task.outputs["split_1"]
testing_data = split_task.outputs["split_2"]
model = train_XGBoost_model_on_CSV_op(
training_data=training_data,
label_column_name=label_column,
# Optional:
#starting_model=None,
#num_iterations=10,
#booster_params={},
#objective="reg:squarederror",
#booster="gbtree",
#learning_rate=0.3,
#min_split_loss=0,
#max_depth=6,
).outputs["model"]
# Predicting on the testing data
predictions = xgboost_predict_on_CSV_op(
data=testing_data,
model=model,
# label_column needs to be set when doing prediction on a dataset that has labels
label_column_name=label_column,
).outputs["predictions"]
vertex_model_name = upload_XGBoost_model_to_Google_Cloud_Vertex_AI_op(
model=model,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=vertex_model_name,
).outputs["endpoint_name"]
pipeline_func = train_tabular_regression_model_using_XGBoost_pipeline
# %% Pipeline submission
if __name__ == '__main__':
from google.cloud import aiplatform
aiplatform.PipelineJob.from_pipeline_func(pipeline_func=pipeline_func).submit()
@@ -1,238 +0,0 @@
name: Train tabular regression model using all frameworks pipeline
metadata:
annotations:
author: Alexey Volkov <alexey.volkov@ark-kun.com>
canonical_location: https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/samples/Google_Cloud_Vertex_AI/Train_tabular_regression_model_using_all_frameworks_and_import_to_Vertex_AI/pipeline.component.yaml
sdk: https://cloud-pipelines.net/pipeline-editor/
implementation:
graph:
tasks:
Download from GCS:
componentRef:
digest: 4175c9ff143cb8cc75d05451c0a0ebdf5a0d6d020816e29f5e9cefbb7d56f241
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/27a5ea25e849c9e8c0cb6ed65518bc3ece259aaf/components/google-cloud/storage/download/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
GCS path: gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv
annotations:
editor.position: '{"x":550,"y":40,"width":180,"height":40}'
Select columns using Pandas on CSV data:
componentRef:
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url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/8c78aae096806cff3bc331a40566f42f5c3e9d4b/components/pandas/Select_columns/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: Data
taskId: Download from GCS
column_names: '["tips", "trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"]'
annotations:
editor.position: '{"x":550,"y":140,"width":180,"height":54}'
Fill all missing values using Pandas on CSV data:
componentRef:
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arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Select columns using Pandas on CSV data
type: CSV
replacement_value: '0'
annotations:
editor.position: '{"x":550,"y":250,"width":180,"height":54}'
Split rows into subsets:
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arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Fill all missing values using Pandas on CSV data
type: CSV
fraction_1: '0.8'
annotations:
editor.position: '{"x":550,"y":360,"width":180,"height":40}'
Create fully connected pytorch network:
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arguments:
input_size: '7'
hidden_layer_sizes: '[10]'
activation_name: elu
annotations:
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Create fully connected tensorflow network:
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arguments:
input_size: '7'
hidden_layer_sizes: '[10]'
activation_name: elu
annotations:
editor.position: '{"x":40,"y":500,"width":180,"height":54}'
Train model using Keras on CSV:
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arguments:
training_data:
taskOutput:
outputName: split_1
taskId: Split rows into subsets
type: CSV
model:
taskOutput:
outputName: model
taskId: Create fully connected tensorflow network
type: TensorflowSavedModel
label_column_name: tips
number_of_epochs: '10'
metric_names: '["mean_absolute_error"]'
annotations:
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Train pytorch model from csv:
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model:
taskOutput:
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training_data:
taskOutput:
outputName: split_1
taskId: Split rows into subsets
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label_column_name: tips
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training_data:
taskOutput:
outputName: split_1
taskId: Split rows into subsets
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label_column_name: tips
annotations:
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Train linear regression model using scikit learn from CSV:
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arguments:
dataset:
taskOutput:
outputName: split_1
taskId: Split rows into subsets
type: CSV
label_column_name: tips
annotations:
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Predict with TensorFlow model on CSV data:
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arguments:
dataset:
taskOutput:
outputName: split_2
taskId: Split rows into subsets
type: CSV
model:
taskOutput:
outputName: trained_model
taskId: Train model using Keras on CSV
type: TensorflowSavedModel
label_column_name: tips
annotations:
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Create PyTorch Model Archive with base handler:
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arguments:
Model:
taskOutput:
outputName: trained_model
taskId: Train pytorch model from csv
type: PyTorchScriptModule
Model name: model
Model version: '1.0'
annotations:
editor.position: '{"x":380,"y":750,"width":180,"height":54}'
Xgboost predict on CSV:
componentRef:
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arguments:
data:
taskOutput:
outputName: split_2
taskId: Split rows into subsets
type: CSV
model:
taskOutput:
outputName: model
taskId: Train XGBoost model on CSV
type: XGBoostModel
label_column_name: tips
annotations:
editor.position: '{"x":810,"y":750,"width":180,"height":40}'
Upload Scikit learn pickle model to Google Cloud Vertex AI:
componentRef:
digest: 81c91c8d7d21ec97e0872f669d68bd89edea87279d703685db54aa94743bebcd
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/c6a8b67d1ada2cc17665c99ff6b410df588bee28/components/google-cloud/Vertex_AI/Models/Upload_Scikit-learn_pickle_model/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
model:
taskOutput:
outputName: model
taskId: Train linear regression model using scikit learn from CSV
type: ScikitLearnPickleModel
annotations:
editor.position: '{"x":1030,"y":750,"width":180,"height":70}'
Upload Tensorflow model to Google Cloud Vertex AI:
componentRef:
digest: 2e45263ff640b1a688e359b6936e27a81b2407749a84f340af2aa5547e0cb92c
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/c6a8b67d1ada2cc17665c99ff6b410df588bee28/components/google-cloud/Vertex_AI/Models/Upload_Tensorflow_model/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
model:
taskOutput:
outputName: trained_model
taskId: Train model using Keras on CSV
type: TensorflowSavedModel
annotations:
editor.position: '{"x":40,"y":880,"width":180,"height":54}'
Upload PyTorch model archive to Google Cloud Vertex AI:
componentRef:
digest: 4450212fae7b9001482aca7eb78b28413c205506eccf08a04e7754a8dfa99004
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/c6a8b67d1ada2cc17665c99ff6b410df588bee28/components/google-cloud/Vertex_AI/Models/Upload_PyTorch_model_archive/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
model_archive:
taskOutput:
outputName: Model archive
taskId: Create PyTorch Model Archive with base handler
type: PyTorchModelArchive
annotations:
editor.position: '{"x":380,"y":880,"width":180,"height":70}'
Upload XGBoost model to Google Cloud Vertex AI:
componentRef:
digest: 5a5a273c403670743820986c03a4175b7cb4595a556524fefcce403656286977
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/c6a8b67d1ada2cc17665c99ff6b410df588bee28/components/google-cloud/Vertex_AI/Models/Upload_XGBoost_model/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
model:
taskOutput:
outputName: model
taskId: Train XGBoost model on CSV
type: XGBoostModel
annotations:
editor.position: '{"x":720,"y":880,"width":180,"height":54}'
outputValues: {}
@@ -1,208 +0,0 @@
# python3 -m pip install "kfp<2.0.0" "google-cloud-aiplatform>=1.16.0" --upgrade --quiet
from kfp import components
# %% Loading components
download_from_gcs_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/storage/download/component.yaml")
select_columns_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Select_columns/in_CSV_format/component.yaml")
fill_all_missing_values_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml")
split_rows_into_subsets_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/dataset_manipulation/Split_rows_into_subsets/in_CSV/component.yaml")
# TensorFlow
create_fully_connected_tensorflow_network_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/tensorflow/Create_fully_connected_network/component.yaml")
train_model_using_Keras_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/tensorflow/Train_model_using_Keras/on_CSV/component.yaml")
predict_with_TensorFlow_model_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/tensorflow/Predict/on_CSV/component.yaml")
upload_Tensorflow_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_Tensorflow_model/component.yaml")
# PyTorch
create_fully_connected_pytorch_network_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/PyTorch/Create_fully_connected_network/component.yaml")
train_pytorch_model_from_csv_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/PyTorch/Train_PyTorch_model/from_CSV/component.yaml")
create_pytorch_model_archive_with_base_handler_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/PyTorch/Create_PyTorch_Model_Archive/with_base_handler/component.yaml")
upload_PyTorch_model_archive_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_PyTorch_model_archive/component.yaml")
# XGBoost
train_XGBoost_model_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/XGBoost/Train/component.yaml")
xgboost_predict_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/XGBoost/Predict/component.yaml")
upload_XGBoost_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_XGBoost_model/component.yaml")
# Scikit-learn
train_linear_regression_model_using_scikit_learn_from_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/1f5cf6e06409b704064b2086c0a705e4e6b4fcde/community-content/pipeline_components/ML_frameworks/Scikit_learn/Train_linear_regression_model/from_CSV/component.yaml")
upload_Scikit_learn_pickle_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_Scikit-learn_pickle_model/component.yaml")
# Vertex AI
deploy_model_to_endpoint_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Deploy_to_endpoint/component.yaml")
# %% Pipeline definition
def train_tabular_regression_model_using_all_frameworks_pipeline():
dataset_gcs_uri = "gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv"
feature_columns = ["trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"] # Excluded "trip_total"
label_column = "tips"
training_set_fraction = 0.8
# Deploying the model might incur additional costs over time
deploy_model = False
all_columns = [label_column] + feature_columns
dataset = download_from_gcs_op(
gcs_path=dataset_gcs_uri
).outputs["Data"]
dataset = select_columns_using_Pandas_on_CSV_data_op(
table=dataset,
column_names=all_columns,
).outputs["transformed_table"]
dataset = fill_all_missing_values_using_Pandas_on_CSV_data_op(
table=dataset,
replacement_value="0",
# # Optional:
# column_names=None, # =[...]
).outputs["transformed_table"]
split_task = split_rows_into_subsets_op(
table=dataset,
fraction_1=training_set_fraction,
)
training_data = split_task.outputs["split_1"]
testing_data = split_task.outputs["split_2"]
# TensorFlow
tensorflow_network = create_fully_connected_tensorflow_network_op(
input_size=len(feature_columns),
# Optional:
hidden_layer_sizes=[10],
activation_name="elu",
# output_activation_name=None,
# output_size=1,
).outputs["model"]
tensorflow_model = train_model_using_Keras_on_CSV_op(
training_data=training_data,
model=tensorflow_network,
label_column_name=label_column,
# Optional:
#loss_function_name="mean_squared_error",
number_of_epochs=10,
#learning_rate=0.1,
#optimizer_name="Adadelta",
#optimizer_parameters={},
#batch_size=32,
metric_names=["mean_absolute_error"],
#random_seed=0,
).outputs["trained_model"]
tensorflow_predictions = predict_with_TensorFlow_model_on_CSV_data_op(
dataset=testing_data,
model=tensorflow_model,
# label_column_name needs to be set when doing prediction on a dataset that has labels
label_column_name=label_column,
# Optional:
# batch_size=1000,
).outputs["predictions"]
tensorflow_vertex_model_name = upload_Tensorflow_model_to_Google_Cloud_Vertex_AI_op(
model=tensorflow_model,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
tensorflow_vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=tensorflow_vertex_model_name,
).outputs["endpoint_name"]
# PyTorch
pytorch_network = create_fully_connected_pytorch_network_op(
input_size=len(feature_columns),
# Optional:
hidden_layer_sizes=[10],
activation_name="elu",
# output_activation_name=None,
# output_size=1,
).outputs["model"]
pytorch_model = train_pytorch_model_from_csv_op(
model=pytorch_network,
training_data=training_data,
label_column_name=label_column,
# Optional:
#loss_function_name="mse_loss",
#number_of_epochs=1,
#learning_rate=0.1,
#optimizer_name="Adadelta",
#optimizer_parameters={},
#batch_size=32,
#batch_log_interval=100,
#random_seed=0,
).outputs["trained_model"]
pytorch_model_archive = create_pytorch_model_archive_with_base_handler_op(
model=pytorch_model,
# Optional:
# model_name="model",
# model_version="1.0",
).outputs["Model archive"]
pytorch_vertex_model_name = upload_PyTorch_model_archive_to_Google_Cloud_Vertex_AI_op(
model_archive=pytorch_model_archive,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
pytorch_vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=pytorch_vertex_model_name,
).outputs["endpoint_name"]
# XGBoost
xgboost_model = train_XGBoost_model_on_CSV_op(
training_data=training_data,
label_column_name=label_column,
# Optional:
#starting_model=None,
#num_iterations=10,
#booster_params={},
#objective="reg:squarederror",
#booster="gbtree",
#learning_rate=0.3,
#min_split_loss=0,
#max_depth=6,
).outputs["model"]
# Predicting on the testing data
xgboost_predictions = xgboost_predict_on_CSV_op(
data=testing_data,
model=xgboost_model,
# label_column needs to be set when doing prediction on a dataset that has labels
label_column_name=label_column,
).outputs["predictions"]
xgboost_vertex_model_name = upload_XGBoost_model_to_Google_Cloud_Vertex_AI_op(
model=xgboost_model,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
xgboost_vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=xgboost_vertex_model_name,
).outputs["endpoint_name"]
# Scikit-learn
sklearn_model = train_linear_regression_model_using_scikit_learn_from_CSV_op(
dataset=training_data,
label_column_name=label_column,
).outputs["model"]
sklearn_vertex_model_name = upload_Scikit_learn_pickle_model_to_Google_Cloud_Vertex_AI_op(
model=sklearn_model,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
sklearn_vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=sklearn_vertex_model_name,
).outputs["endpoint_name"]
pipeline_func=train_tabular_regression_model_using_all_frameworks_pipeline
# %% Pipeline submission
if __name__ == '__main__':
from google.cloud import aiplatform
aiplatform.PipelineJob.from_pipeline_func(pipeline_func=pipeline_func).submit()
@@ -1,64 +0,0 @@
name: Train linear regression model using scikit learn from CSV
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/ML_frameworks/Scikit_learn/Train_linear_regression_model/from_CSV/component.yaml'}
inputs:
- {name: dataset, type: CSV}
- {name: label_column_name, type: String}
outputs:
- {name: model, type: ScikitLearnPickleModel}
implementation:
container:
image: python:3.9
command:
- sh
- -c
- (PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet --no-warn-script-location
'scikit-learn==1.0.2' 'pandas==1.4.3' || PIP_DISABLE_PIP_VERSION_CHECK=1 python3
-m pip install --quiet --no-warn-script-location 'scikit-learn==1.0.2' 'pandas==1.4.3'
--user) && "$0" "$@"
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def _make_parent_dirs_and_return_path(file_path: str):
import os
os.makedirs(os.path.dirname(file_path), exist_ok=True)
return file_path
def train_linear_regression_model_using_scikit_learn_from_CSV(
dataset_path,
model_path,
label_column_name,
):
import pandas
import pickle
from sklearn import linear_model
df = pandas.read_csv(dataset_path)
model = linear_model.LinearRegression()
model.fit(
X=df.drop(columns=label_column_name),
y=df[label_column_name],
)
with open(model_path, "wb") as f:
pickle.dump(model, f)
import argparse
_parser = argparse.ArgumentParser(prog='Train linear regression model using scikit learn from CSV', description='')
_parser.add_argument("--dataset", dest="dataset_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--label-column-name", dest="label_column_name", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--model", dest="model_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parsed_args = vars(_parser.parse_args())
_outputs = train_linear_regression_model_using_scikit_learn_from_CSV(**_parsed_args)
args:
- --dataset
- {inputPath: dataset}
- --label-column-name
- {inputValue: label_column_name}
- --model
- {outputPath: model}
@@ -1,163 +0,0 @@
name: Train logistic regression model using scikit learn from CSV
description: Train logistic regression model using Scikit-learn
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/ML_frameworks/Scikit_learn/Train_logistic_regression_model/from_CSV/component.yaml'}
inputs:
- {name: dataset, type: CSV}
- {name: label_column_name, type: String}
- {name: penalty, type: String, default: l2, optional: true}
- {name: solver, type: String, default: lbfgs, optional: true}
- {name: max_iterations, type: Integer, default: '100', optional: true}
- {name: multi_class_mode, type: String, default: auto, optional: true}
- {name: random_seed, type: Integer, default: '0', optional: true}
outputs:
- {name: model, type: ScikitLearnPickleModel}
- {name: model_parameters, type: JsonObject}
implementation:
container:
image: python:3.9
command:
- sh
- -c
- (PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet --no-warn-script-location
'scikit-learn==1.0.2' 'pandas==1.4.3' || PIP_DISABLE_PIP_VERSION_CHECK=1 python3
-m pip install --quiet --no-warn-script-location 'scikit-learn==1.0.2' 'pandas==1.4.3'
--user) && "$0" "$@"
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def _make_parent_dirs_and_return_path(file_path: str):
import os
os.makedirs(os.path.dirname(file_path), exist_ok=True)
return file_path
def train_logistic_regression_model_using_scikit_learn_from_CSV(
dataset_path,
model_path,
label_column_name,
penalty = "l2", # l1, l2, elasticnet, none
solver = "lbfgs", # newton-cg, lbfgs, liblinear, sag, saga
max_iterations = 100,
multi_class_mode = "auto", # auto, ovr, multinomial
random_seed = 0,
):
"""Train logistic regression model using Scikit-learn
See https://scikit-learn.org/stable/modules/generated/sklearn.linear_model.LogisticRegression.html
"""
import json
import pandas
import pickle
from sklearn import linear_model
df = pandas.read_csv(dataset_path)
model = linear_model.LogisticRegression(
penalty=penalty,
#dual=False,
#tol=1e-4,
#C=1.0,
#fit_intercept=True,
#intercept_scaling=1,
#class_weight=None,
random_state=random_seed,
solver=solver,
max_iter=max_iterations,
multi_class=multi_class_mode,
#l1_ratio=None,
verbose=1,
)
model_parameters = model.get_params()
model_parameters_json = json.dumps(model_parameters, indent=2)
print("Model parameters:")
print(model_parameters_json)
print()
model.fit(
X=df.drop(columns=label_column_name),
y=df[label_column_name],
)
with open(model_path, "wb") as f:
pickle.dump(model, f)
return (model_parameters_json,)
def _serialize_json(obj) -> str:
if isinstance(obj, str):
return obj
import json
def default_serializer(obj):
if hasattr(obj, 'to_struct'):
return obj.to_struct()
else:
raise TypeError("Object of type '%s' is not JSON serializable and does not have .to_struct() method." % obj.__class__.__name__)
return json.dumps(obj, default=default_serializer, sort_keys=True)
import argparse
_parser = argparse.ArgumentParser(prog='Train logistic regression model using scikit learn from CSV', description='Train logistic regression model using Scikit-learn')
_parser.add_argument("--dataset", dest="dataset_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--label-column-name", dest="label_column_name", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--penalty", dest="penalty", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--solver", dest="solver", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--max-iterations", dest="max_iterations", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--multi-class-mode", dest="multi_class_mode", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--random-seed", dest="random_seed", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--model", dest="model_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parser.add_argument("----output-paths", dest="_output_paths", type=str, nargs=1)
_parsed_args = vars(_parser.parse_args())
_output_files = _parsed_args.pop("_output_paths", [])
_outputs = train_logistic_regression_model_using_scikit_learn_from_CSV(**_parsed_args)
_output_serializers = [
_serialize_json,
]
import os
for idx, output_file in enumerate(_output_files):
try:
os.makedirs(os.path.dirname(output_file))
except OSError:
pass
with open(output_file, 'w') as f:
f.write(_output_serializers[idx](_outputs[idx]))
args:
- --dataset
- {inputPath: dataset}
- --label-column-name
- {inputValue: label_column_name}
- if:
cond: {isPresent: penalty}
then:
- --penalty
- {inputValue: penalty}
- if:
cond: {isPresent: solver}
then:
- --solver
- {inputValue: solver}
- if:
cond: {isPresent: max_iterations}
then:
- --max-iterations
- {inputValue: max_iterations}
- if:
cond: {isPresent: multi_class_mode}
then:
- --multi-class-mode
- {inputValue: multi_class_mode}
- if:
cond: {isPresent: random_seed}
then:
- --random-seed
- {inputValue: random_seed}
- --model
- {outputPath: model}
- '----output-paths'
- {outputPath: model_parameters}
@@ -1,41 +0,0 @@
name: Create PyTorch Model Archive with base handler
inputs:
- {name: Model, type: PyTorchScriptModule}
- {name: Model name, type: String, default: model}
- {name: Model version, type: String, default: "1.0"}
outputs:
- {name: Model archive, type: PyTorchModelArchive}
metadata:
annotations:
author: Alexey Volkov <alexey.volkov@ark-kun.com>
canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/PyTorch/Create_PyTorch_Model_Archive/with_base_handler/component.yaml'
implementation:
container:
image: pytorch/torchserve:0.6.0-cpu
command:
- bash
- -exc
- |
model_path=$0
model_name=$1
model_version=$2
output_model_archive_path=$3
mkdir -p "$(dirname "$output_model_archive_path")"
# TODO: Use the built-in base_handler once my fix is merged: https://github.com/pytorch/serve/pull/1682
echo '
from ts.torch_handler import base_handler
class BaseHandler(base_handler.BaseHandler):
pass
' > base_handler.py # torch-model-archiver needs the handler to have .py extension
torch-model-archiver --model-name "$model_name" --version "$model_version" --serialized-file "$model_path" --handler base_handler.py
# torch-model-archiver does not allow specifying the output path, but always writes to "${model_name}.<format>"
expected_model_archive_path="${model_name}.mar"
mv "$expected_model_archive_path" "$output_model_archive_path"
- {inputPath: Model}
- {inputValue: Model name}
- {inputValue: Model version}
- {outputPath: Model archive}
@@ -1,117 +0,0 @@
name: Create fully connected pytorch network
description: Creates fully-connected network in PyTorch ScriptModule format
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/PyTorch/Create_fully_connected_network/component.yaml'}
inputs:
- {name: input_size, type: Integer}
- {name: hidden_layer_sizes, type: JsonArray, default: '[]', optional: true}
- {name: output_size, type: Integer, default: '1', optional: true}
- {name: activation_name, type: String, default: relu, optional: true}
- {name: output_activation_name, type: String, optional: true}
- {name: random_seed, type: Integer, default: '0', optional: true}
outputs:
- {name: model, type: PyTorchScriptModule}
implementation:
container:
image: pytorch/pytorch:1.7.1-cuda11.0-cudnn8-runtime
command:
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def _make_parent_dirs_and_return_path(file_path: str):
import os
os.makedirs(os.path.dirname(file_path), exist_ok=True)
return file_path
def create_fully_connected_pytorch_network(
input_size,
model_path,
hidden_layer_sizes = [],
output_size = 1,
activation_name = 'relu',
output_activation_name = None,
random_seed = 0,
):
'''Creates fully-connected network in PyTorch ScriptModule format'''
import torch
torch.manual_seed(random_seed)
activation = getattr(torch, activation_name, None) or getattr(torch.nn.functional, activation_name, None)
if not activation:
raise ValueError(f'Activation "{activation_name}" was not found.')
class ActivationLayer(torch.nn.Module):
def forward(self, input):
return activation(input)
layers = []
prev_layer_size = input_size
for layer_size in hidden_layer_sizes:
layer = torch.nn.Linear(prev_layer_size, layer_size)
prev_layer_size = layer_size
layers.append(layer)
layers.append(ActivationLayer())
# Adding the output layer
layers.append(torch.nn.Linear(prev_layer_size, output_size))
# Adding the optional activation after the output layer
if output_activation_name:
output_activation = getattr(torch, output_activation_name, None) or getattr(torch.nn.functional, output_activation_name, None)
class OutputActivationLayer(torch.nn.Module):
def forward(self, input):
return output_activation(input)
layers.append(OutputActivationLayer())
network = torch.nn.Sequential(*layers)
script_module = torch.jit.script(network)
print(script_module)
script_module.save(model_path)
import json
import argparse
_parser = argparse.ArgumentParser(prog='Create fully connected pytorch network', description='Creates fully-connected network in PyTorch ScriptModule format')
_parser.add_argument("--input-size", dest="input_size", type=int, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--hidden-layer-sizes", dest="hidden_layer_sizes", type=json.loads, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--output-size", dest="output_size", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--activation-name", dest="activation_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--output-activation-name", dest="output_activation_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--random-seed", dest="random_seed", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--model", dest="model_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parsed_args = vars(_parser.parse_args())
_outputs = create_fully_connected_pytorch_network(**_parsed_args)
args:
- --input-size
- {inputValue: input_size}
- if:
cond: {isPresent: hidden_layer_sizes}
then:
- --hidden-layer-sizes
- {inputValue: hidden_layer_sizes}
- if:
cond: {isPresent: output_size}
then:
- --output-size
- {inputValue: output_size}
- if:
cond: {isPresent: activation_name}
then:
- --activation-name
- {inputValue: activation_name}
- if:
cond: {isPresent: output_activation_name}
then:
- --output-activation-name
- {inputValue: output_activation_name}
- if:
cond: {isPresent: random_seed}
then:
- --random-seed
- {inputValue: random_seed}
- --model
- {outputPath: model}
@@ -1,209 +0,0 @@
name: Train pytorch model from csv
description: Trains PyTorch model
metadata:
annotations:
author: Alexey Volkov <alexey.volkov@ark-kun.com>
canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/PyTorch/Train_PyTorch_model/from_CSV/component.yaml'
inputs:
- {name: model, type: PyTorchScriptModule}
- {name: training_data, type: CSV}
- {name: label_column_name, type: String}
- {name: loss_function_name, type: String, default: mse_loss, optional: true}
- {name: number_of_epochs, type: Integer, default: '1', optional: true}
- {name: learning_rate, type: Float, default: '0.1', optional: true}
- {name: optimizer_name, type: String, default: Adadelta, optional: true}
- {name: optimizer_parameters, type: JsonObject, optional: true}
- {name: batch_size, type: Integer, default: '32', optional: true}
- {name: batch_log_interval, type: Integer, default: '100', optional: true}
- {name: random_seed, type: Integer, default: '0', optional: true}
outputs:
- {name: trained_model, type: PyTorchScriptModule}
implementation:
container:
image: pytorch/pytorch:1.7.1-cuda11.0-cudnn8-runtime
command:
- sh
- -c
- (PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet --no-warn-script-location
'pandas==1.4.3' || PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet
--no-warn-script-location 'pandas==1.4.3' --user) && "$0" "$@"
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def _make_parent_dirs_and_return_path(file_path: str):
import os
os.makedirs(os.path.dirname(file_path), exist_ok=True)
return file_path
def train_pytorch_model_from_csv(
model_path,
training_data_path,
trained_model_path,
label_column_name,
loss_function_name = 'mse_loss',
number_of_epochs = 1,
learning_rate = 0.1,
optimizer_name = 'Adadelta',
optimizer_parameters = None,
batch_size = 32,
batch_log_interval = 100,
random_seed = 0,
):
'''Trains PyTorch model'''
import pandas
import torch
torch.manual_seed(random_seed)
use_cuda = torch.cuda.is_available()
device = torch.device("cuda" if use_cuda else "cpu")
model = torch.jit.load(model_path)
model.to(device)
model.train()
optimizer_class = getattr(torch.optim, optimizer_name, None)
if not optimizer_class:
raise ValueError(f'Optimizer "{optimizer_name}" was not found.')
optimizer_parameters = optimizer_parameters or {}
optimizer_parameters['lr'] = learning_rate
optimizer = optimizer_class(model.parameters(), **optimizer_parameters)
loss_function = getattr(torch, loss_function_name, None) or getattr(torch.nn, loss_function_name, None) or getattr(torch.nn.functional, loss_function_name, None)
if not loss_function:
raise ValueError(f'Loss function "{loss_function_name}" was not found.')
class CsvDataset(torch.utils.data.Dataset):
def __init__(self, file_path, label_column_name, drop_nan_columns_or_rows = 'columns'):
dataframe = pandas.read_csv(file_path).convert_dtypes()
# Preventing error: default_collate: batch must contain tensors, numpy arrays, numbers, dicts or lists; found object
if drop_nan_columns_or_rows == 'columns':
non_nan_data = dataframe.dropna(axis='columns')
removed_columns = set(dataframe.columns) - set(non_nan_data.columns)
if removed_columns:
print('Skipping columns with NaNs: ' + str(removed_columns))
dataframe = non_nan_data
if drop_nan_columns_or_rows == 'rows':
non_nan_data = dataframe.dropna(axis='index')
number_of_removed_rows = len(dataframe) - len(non_nan_data)
if number_of_removed_rows:
print(f'Skipped {number_of_removed_rows} rows with NaNs.')
dataframe = non_nan_data
numerical_data = dataframe.select_dtypes(include='number')
non_numerical_data = dataframe.select_dtypes(exclude='number')
if not non_numerical_data.empty:
print('Skipping non-number columns:')
print(non_numerical_data.dtypes)
self._dataframe = dataframe
self.labels = numerical_data[[label_column_name]]
self.features = numerical_data.drop(columns=[label_column_name])
def __len__(self):
return len(self._dataframe)
def __getitem__(self, index):
return [self.features.loc[index].to_numpy(dtype='float32'), self.labels.loc[index].to_numpy(dtype='float32')]
dataset = CsvDataset(
file_path=training_data_path,
label_column_name=label_column_name,
)
train_loader = torch.utils.data.DataLoader(
dataset=dataset,
batch_size=batch_size,
shuffle=True,
)
last_full_batch_loss = None
for epoch in range(1, number_of_epochs + 1):
for batch_idx, (data, target) in enumerate(train_loader):
data, target = data.to(device), target.to(device)
optimizer.zero_grad()
output = model(data)
loss = loss_function(output, target)
loss.backward()
optimizer.step()
if len(data) == batch_size:
last_full_batch_loss = loss.item()
if batch_idx % batch_log_interval == 0:
print('Train Epoch: {} [{}/{} ({:.0f}%)]\tLoss: {:.6f}'.format(
epoch, batch_idx * len(data), len(train_loader.dataset),
100. * batch_idx / len(train_loader), loss.item()))
print(f'Training epoch {epoch} completed. Last full batch loss: {last_full_batch_loss:.6f}')
# print(optimizer.state_dict())
model.save(trained_model_path)
import json
import argparse
_parser = argparse.ArgumentParser(prog='Train pytorch model from csv', description='Trains PyTorch model')
_parser.add_argument("--model", dest="model_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--training-data", dest="training_data_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--label-column-name", dest="label_column_name", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--loss-function-name", dest="loss_function_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--number-of-epochs", dest="number_of_epochs", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--learning-rate", dest="learning_rate", type=float, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--optimizer-name", dest="optimizer_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--optimizer-parameters", dest="optimizer_parameters", type=json.loads, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--batch-size", dest="batch_size", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--batch-log-interval", dest="batch_log_interval", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--random-seed", dest="random_seed", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--trained-model", dest="trained_model_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parsed_args = vars(_parser.parse_args())
_outputs = train_pytorch_model_from_csv(**_parsed_args)
args:
- --model
- {inputPath: model}
- --training-data
- {inputPath: training_data}
- --label-column-name
- {inputValue: label_column_name}
- if:
cond: {isPresent: loss_function_name}
then:
- --loss-function-name
- {inputValue: loss_function_name}
- if:
cond: {isPresent: number_of_epochs}
then:
- --number-of-epochs
- {inputValue: number_of_epochs}
- if:
cond: {isPresent: learning_rate}
then:
- --learning-rate
- {inputValue: learning_rate}
- if:
cond: {isPresent: optimizer_name}
then:
- --optimizer-name
- {inputValue: optimizer_name}
- if:
cond: {isPresent: optimizer_parameters}
then:
- --optimizer-parameters
- {inputValue: optimizer_parameters}
- if:
cond: {isPresent: batch_size}
then:
- --batch-size
- {inputValue: batch_size}
- if:
cond: {isPresent: batch_log_interval}
then:
- --batch-log-interval
- {inputValue: batch_log_interval}
- if:
cond: {isPresent: random_seed}
then:
- --random-seed
- {inputValue: random_seed}
- --trained-model
- {outputPath: trained_model}
@@ -1,110 +0,0 @@
name: Xgboost predict on CSV
description: Makes predictions using a trained XGBoost model.
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/XGBoost/Predict/component.yaml'}
inputs:
- {name: data, type: CSV, description: Feature data in Apache Parquet format.}
- {name: model, type: XGBoostModel, description: Trained model in binary XGBoost format.}
- {name: label_column_name, type: String, description: Optional. Name of the column
containing the label data that is excluded during the prediction., optional: true}
outputs:
- {name: predictions, description: Model predictions.}
implementation:
container:
image: python:3.10
command:
- sh
- -c
- (PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet --no-warn-script-location
'xgboost==1.6.1' 'pandas==1.4.3' || PIP_DISABLE_PIP_VERSION_CHECK=1 python3
-m pip install --quiet --no-warn-script-location 'xgboost==1.6.1' 'pandas==1.4.3'
--user) && "$0" "$@"
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def _make_parent_dirs_and_return_path(file_path: str):
import os
os.makedirs(os.path.dirname(file_path), exist_ok=True)
return file_path
def xgboost_predict_on_CSV(
data_path,
model_path,
predictions_path,
label_column_name = None,
):
"""Makes predictions using a trained XGBoost model.
Args:
data_path: Feature data in Apache Parquet format.
model_path: Trained model in binary XGBoost format.
predictions_path: Model predictions.
label_column_name: Optional. Name of the column containing the label data that is excluded during the prediction.
Annotations:
author: Alexey Volkov <alexey.volkov@ark-kun.com>
"""
from pathlib import Path
import numpy
import pandas
import xgboost
df = pandas.read_csv(
data_path,
).convert_dtypes()
print("Evaluation data information:")
df.info(verbose=True)
# Converting column types that XGBoost does not support
for column_name, dtype in df.dtypes.items():
if dtype in ["string", "object"]:
print(f"Treating the {dtype.name} column '{column_name}' as categorical.")
df[column_name] = df[column_name].astype("category")
print(f"Inferred {len(df[column_name].cat.categories)} categories for the '{column_name}' column.")
# Working around the XGBoost issue with nullable floats: https://github.com/dmlc/xgboost/issues/8213
if pandas.api.types.is_float_dtype(dtype):
# Converting from "Float64" to "float64"
df[column_name] = df[column_name].astype(dtype.name.lower())
print("Final evaluation data information:")
df.info(verbose=True)
if label_column_name is not None:
df = df.drop(columns=[label_column_name])
testing_data = xgboost.DMatrix(
data=df,
enable_categorical=True,
)
model = xgboost.Booster(model_file=model_path)
predictions = model.predict(testing_data)
Path(predictions_path).parent.mkdir(parents=True, exist_ok=True)
numpy.savetxt(predictions_path, predictions)
import argparse
_parser = argparse.ArgumentParser(prog='Xgboost predict on CSV', description='Makes predictions using a trained XGBoost model.')
_parser.add_argument("--data", dest="data_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--model", dest="model_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--label-column-name", dest="label_column_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--predictions", dest="predictions_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parsed_args = vars(_parser.parse_args())
_outputs = xgboost_predict_on_CSV(**_parsed_args)
args:
- --data
- {inputPath: data}
- --model
- {inputPath: model}
- if:
cond: {isPresent: label_column_name}
then:
- --label-column-name
- {inputValue: label_column_name}
- --predictions
- {outputPath: predictions}
@@ -1,241 +0,0 @@
name: Train XGBoost model on CSV
description: Trains an XGBoost model.
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/XGBoost/Train/component.yaml'}
inputs:
- {name: training_data, type: CSV, description: Training data in CSV format.}
- {name: label_column_name, type: String, description: Name of the column containing
the label data.}
- {name: starting_model, type: XGBoostModel, description: Existing trained model to
start from (in the binary XGBoost format)., optional: true}
- {name: num_iterations, type: Integer, description: Number of boosting iterations.,
default: '10', optional: true}
- name: objective
type: String
description: |-
The learning task and the corresponding learning objective.
See https://xgboost.readthedocs.io/en/latest/parameter.html#learning-task-parameters
The most common values are:
"reg:squarederror" - Regression with squared loss (default).
"reg:logistic" - Logistic regression.
"binary:logistic" - Logistic regression for binary classification, output probability.
"binary:logitraw" - Logistic regression for binary classification, output score before logistic transformation
"rank:pairwise" - Use LambdaMART to perform pairwise ranking where the pairwise loss is minimized
"rank:ndcg" - Use LambdaMART to perform list-wise ranking where Normalized Discounted Cumulative Gain (NDCG) is maximized
default: reg:squarederror
optional: true
- {name: booster, type: String, description: 'The booster to use. Can be `gbtree`,
`gblinear` or `dart`; `gbtree` and `dart` use tree based models while `gblinear`
uses linear functions.', default: gbtree, optional: true}
- {name: learning_rate, type: Float, description: 'Step size shrinkage used in update
to prevents overfitting. Range: [0,1].', default: '0.3', optional: true}
- name: min_split_loss
type: Float
description: |-
Minimum loss reduction required to make a further partition on a leaf node of the tree.
The larger `min_split_loss` is, the more conservative the algorithm will be. Range: [0,Inf].
default: '0'
optional: true
- name: max_depth
type: Integer
description: |-
Maximum depth of a tree. Increasing this value will make the model more complex and more likely to overfit.
0 indicates no limit on depth. Range: [0,Inf].
default: '6'
optional: true
- {name: booster_params, type: JsonObject, description: 'Parameters for the booster.
See https://xgboost.readthedocs.io/en/latest/parameter.html', optional: true}
outputs:
- {name: model, type: XGBoostModel, description: Trained model in the binary XGBoost
format.}
- {name: model_config, type: XGBoostModelConfig, description: The internal parameter
configuration of Booster as a JSON string.}
implementation:
container:
image: python:3.10
command:
- sh
- -c
- (PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet --no-warn-script-location
'xgboost==1.6.1' 'pandas==1.4.3' || PIP_DISABLE_PIP_VERSION_CHECK=1 python3
-m pip install --quiet --no-warn-script-location 'xgboost==1.6.1' 'pandas==1.4.3'
--user) && "$0" "$@"
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def _make_parent_dirs_and_return_path(file_path: str):
import os
os.makedirs(os.path.dirname(file_path), exist_ok=True)
return file_path
def train_XGBoost_model_on_CSV(
training_data_path,
model_path,
model_config_path,
label_column_name,
starting_model_path = None,
num_iterations = 10,
# Booster parameters
objective = "reg:squarederror",
booster = "gbtree",
learning_rate = 0.3,
min_split_loss = 0,
max_depth = 6,
booster_params = None,
):
"""Trains an XGBoost model.
Args:
training_data_path: Training data in CSV format.
model_path: Trained model in the binary XGBoost format.
model_config_path: The internal parameter configuration of Booster as a JSON string.
starting_model_path: Existing trained model to start from (in the binary XGBoost format).
label_column_name: Name of the column containing the label data.
num_iterations: Number of boosting iterations.
booster_params: Parameters for the booster. See https://xgboost.readthedocs.io/en/latest/parameter.html
objective: The learning task and the corresponding learning objective.
See https://xgboost.readthedocs.io/en/latest/parameter.html#learning-task-parameters
The most common values are:
"reg:squarederror" - Regression with squared loss (default).
"reg:logistic" - Logistic regression.
"binary:logistic" - Logistic regression for binary classification, output probability.
"binary:logitraw" - Logistic regression for binary classification, output score before logistic transformation
"rank:pairwise" - Use LambdaMART to perform pairwise ranking where the pairwise loss is minimized
"rank:ndcg" - Use LambdaMART to perform list-wise ranking where Normalized Discounted Cumulative Gain (NDCG) is maximized
booster: The booster to use. Can be `gbtree`, `gblinear` or `dart`; `gbtree` and `dart` use tree based models while `gblinear` uses linear functions.
learning_rate: Step size shrinkage used in update to prevents overfitting. Range: [0,1].
min_split_loss: Minimum loss reduction required to make a further partition on a leaf node of the tree.
The larger `min_split_loss` is, the more conservative the algorithm will be. Range: [0,Inf].
max_depth: Maximum depth of a tree. Increasing this value will make the model more complex and more likely to overfit.
0 indicates no limit on depth. Range: [0,Inf].
Annotations:
author: Alexey Volkov <alexey.volkov@ark-kun.com>
"""
import pandas
import xgboost
df = pandas.read_csv(
training_data_path,
).convert_dtypes()
print("Training data information:")
df.info(verbose=True)
# Converting column types that XGBoost does not support
for column_name, dtype in df.dtypes.items():
if dtype in ["string", "object"]:
print(f"Treating the {dtype.name} column '{column_name}' as categorical.")
df[column_name] = df[column_name].astype("category")
print(f"Inferred {len(df[column_name].cat.categories)} categories for the '{column_name}' column.")
# Working around the XGBoost issue with nullable floats: https://github.com/dmlc/xgboost/issues/8213
if pandas.api.types.is_float_dtype(dtype):
# Converting from "Float64" to "float64"
df[column_name] = df[column_name].astype(dtype.name.lower())
print()
print("Final training data information:")
df.info(verbose=True)
training_data = xgboost.DMatrix(
data=df.drop(columns=[label_column_name]),
label=df[[label_column_name]],
enable_categorical=True,
)
booster_params = booster_params or {}
booster_params.setdefault("objective", objective)
booster_params.setdefault("booster", booster)
booster_params.setdefault("learning_rate", learning_rate)
booster_params.setdefault("min_split_loss", min_split_loss)
booster_params.setdefault("max_depth", max_depth)
starting_model = None
if starting_model_path:
starting_model = xgboost.Booster(model_file=starting_model_path)
print()
print("Training the model:")
model = xgboost.train(
params=booster_params,
dtrain=training_data,
num_boost_round=num_iterations,
xgb_model=starting_model,
evals=[(training_data, "training_data")],
)
# Saving the model in binary format
model.save_model(model_path)
model_config_str = model.save_config()
with open(model_config_path, "w") as model_config_file:
model_config_file.write(model_config_str)
import json
import argparse
_parser = argparse.ArgumentParser(prog='Train XGBoost model on CSV', description='Trains an XGBoost model.')
_parser.add_argument("--training-data", dest="training_data_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--label-column-name", dest="label_column_name", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--starting-model", dest="starting_model_path", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--num-iterations", dest="num_iterations", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--objective", dest="objective", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--booster", dest="booster", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--learning-rate", dest="learning_rate", type=float, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--min-split-loss", dest="min_split_loss", type=float, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--max-depth", dest="max_depth", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--booster-params", dest="booster_params", type=json.loads, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--model", dest="model_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--model-config", dest="model_config_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parsed_args = vars(_parser.parse_args())
_outputs = train_XGBoost_model_on_CSV(**_parsed_args)
args:
- --training-data
- {inputPath: training_data}
- --label-column-name
- {inputValue: label_column_name}
- if:
cond: {isPresent: starting_model}
then:
- --starting-model
- {inputPath: starting_model}
- if:
cond: {isPresent: num_iterations}
then:
- --num-iterations
- {inputValue: num_iterations}
- if:
cond: {isPresent: objective}
then:
- --objective
- {inputValue: objective}
- if:
cond: {isPresent: booster}
then:
- --booster
- {inputValue: booster}
- if:
cond: {isPresent: learning_rate}
then:
- --learning-rate
- {inputValue: learning_rate}
- if:
cond: {isPresent: min_split_loss}
then:
- --min-split-loss
- {inputValue: min_split_loss}
- if:
cond: {isPresent: max_depth}
then:
- --max-depth
- {inputValue: max_depth}
- if:
cond: {isPresent: booster_params}
then:
- --booster-params
- {inputValue: booster_params}
- --model
- {outputPath: model}
- --model-config
- {outputPath: model_config}
@@ -1,204 +0,0 @@
name: Split rows into subsets
description: Splits the data table according to the split fractions.
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/dataset_manipulation/Split_rows_into_subsets/in_CSV/component.yaml'}
inputs:
- {name: table, type: CSV}
- {name: fraction_1, type: Float, description: 'The proportion of the lines to put
into the 1st split. Range: [0, 1]'}
- name: fraction_2
type: Float
description: |-
The proportion of the lines to put into the 2nd split. Range: [0, 1]
If fraction_2 is not specified, then fraction_2 = 1 - fraction_1.
The remaining lines go to the 3rd split (if any).
optional: true
- {name: random_seed, type: Integer, default: '0', optional: true}
outputs:
- {name: split_1, type: CSV}
- {name: split_2, type: CSV}
- {name: split_3, type: CSV}
- {name: split_1_count, type: Integer}
- {name: split_2_count, type: Integer}
- {name: split_3_count, type: Integer}
implementation:
container:
image: python:3.9
command:
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def _make_parent_dirs_and_return_path(file_path: str):
import os
os.makedirs(os.path.dirname(file_path), exist_ok=True)
return file_path
def split_rows_into_subsets(
table_path,
split_1_path,
split_2_path,
split_3_path,
fraction_1,
fraction_2 = None,
random_seed = 0,
):
"""Splits the data table according to the split fractions.
Args:
fraction_1: The proportion of the lines to put into the 1st split. Range: [0, 1]
fraction_2: The proportion of the lines to put into the 2nd split. Range: [0, 1]
If fraction_2 is not specified, then fraction_2 = 1 - fraction_1.
The remaining lines go to the 3rd split (if any).
"""
import random
random.seed(random_seed)
SHUFFLE_BUFFER_SIZE = 10000
num_splits = 3
if fraction_1 < 0 or fraction_1 > 1:
raise ValueError("fraction_1 must be in between 0 and 1.")
if fraction_2 is None:
fraction_2 = 1 - fraction_1
if fraction_2 < 0 or fraction_2 > 1:
raise ValueError("fraction_2 must be in between 0 and 1.")
fraction_3 = 1 - fraction_1 - fraction_2
fractions = [
fraction_1,
fraction_2,
fraction_3,
]
assert sum(fractions) == 1
written_line_counts = [0] * num_splits
output_files = [
open(split_1_path, "wb"),
open(split_2_path, "wb"),
open(split_3_path, "wb"),
]
with open(table_path, "rb") as input_file:
# Writing the headers
header_line = input_file.readline()
for output_file in output_files:
output_file.write(header_line)
while True:
line_buffer = []
for i in range(SHUFFLE_BUFFER_SIZE):
line = input_file.readline()
if not line:
break
line_buffer.append(line)
# We need to exactly partition the lines between the output files
# To overcome possible systematic bias, we could calculate the total numbers
# of lines written to each file and take that into account.
num_read_lines = len(line_buffer)
number_of_lines_for_files = [0] * num_splits
# List that will have the index of the destination file for each line
file_index_for_line = []
remaining_lines = num_read_lines
remaining_fraction = 1
for i in range(num_splits):
number_of_lines_for_file = (
round(remaining_lines * (fractions[i] / remaining_fraction))
if remaining_fraction > 0
else 0
)
number_of_lines_for_files[i] = number_of_lines_for_file
remaining_lines -= number_of_lines_for_file
remaining_fraction -= fractions[i]
file_index_for_line.extend([i] * number_of_lines_for_file)
assert remaining_lines == 0, f"{remaining_lines}"
assert len(file_index_for_line) == num_read_lines
random.shuffle(file_index_for_line)
for i in range(num_read_lines):
output_files[file_index_for_line[i]].write(line_buffer[i])
written_line_counts[file_index_for_line[i]] += 1
# Exit if the file ended before we were able to fully fill the buffer
if len(line_buffer) != SHUFFLE_BUFFER_SIZE:
break
for output_file in output_files:
output_file.close()
return written_line_counts
def _serialize_int(int_value: int) -> str:
if isinstance(int_value, str):
return int_value
if not isinstance(int_value, int):
raise TypeError('Value "{}" has type "{}" instead of int.'.format(str(int_value), str(type(int_value))))
return str(int_value)
import argparse
_parser = argparse.ArgumentParser(prog='Split rows into subsets', description='Splits the data table according to the split fractions.')
_parser.add_argument("--table", dest="table_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--fraction-1", dest="fraction_1", type=float, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--fraction-2", dest="fraction_2", type=float, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--random-seed", dest="random_seed", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--split-1", dest="split_1_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--split-2", dest="split_2_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--split-3", dest="split_3_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parser.add_argument("----output-paths", dest="_output_paths", type=str, nargs=3)
_parsed_args = vars(_parser.parse_args())
_output_files = _parsed_args.pop("_output_paths", [])
_outputs = split_rows_into_subsets(**_parsed_args)
_output_serializers = [
_serialize_int,
_serialize_int,
_serialize_int,
]
import os
for idx, output_file in enumerate(_output_files):
try:
os.makedirs(os.path.dirname(output_file))
except OSError:
pass
with open(output_file, 'w') as f:
f.write(_output_serializers[idx](_outputs[idx]))
args:
- --table
- {inputPath: table}
- --fraction-1
- {inputValue: fraction_1}
- if:
cond: {isPresent: fraction_2}
then:
- --fraction-2
- {inputValue: fraction_2}
- if:
cond: {isPresent: random_seed}
then:
- --random-seed
- {inputValue: random_seed}
- --split-1
- {outputPath: split_1}
- --split-2
- {outputPath: split_2}
- --split-3
- {outputPath: split_3}
- '----output-paths'
- {outputPath: split_1_count}
- {outputPath: split_2_count}
- {outputPath: split_3_count}
@@ -1,241 +0,0 @@
name: Deploy model to endpoint for Google Cloud Vertex AI Model
description: Deploys Google Cloud Vertex AI Model to a Google Cloud Vertex AI Endpoint.
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/KFPv2_hell/components/google-cloud/Vertex_AI/Models/Deploy_to_endpoint/workaround_for_buggy_KFPv2_compiler/component.yaml'}
inputs:
- {name: model_name, type: String, description: Full resource name of a Google Cloud
Vertex AI Model}
- name: endpoint_name
type: String
description: |-
Optional. Full name of Google Cloud Vertex Endpoint. A new
endpoint is created if the name is not passed.
optional: true
- name: machine_type
type: String
description: |-
The type of the machine. See the [list of machine types
supported for prediction
](https://cloud.google.com/vertex-ai/docs/predictions/configure-compute#machine-types).
Defaults to "n1-standard-2"
default: n1-standard-2
optional: true
- name: min_replica_count
type: Integer
description: |-
Optional. The minimum number of machine replicas this deployed
model will be always deployed on. If traffic against it increases,
it may dynamically be deployed onto more replicas, and as traffic
decreases, some of these extra replicas may be freed.
default: '1'
optional: true
- name: max_replica_count
type: Integer
description: |-
Optional. The maximum number of replicas this deployed model may
be deployed on when the traffic against it increases. If requested
value is too large, the deployment will error, but if deployment
succeeds then the ability to scale the model to that many replicas
is guaranteed (barring service outages). If traffic against the
deployed model increases beyond what its replicas at maximum may
handle, a portion of the traffic will be dropped. If this value
is not provided, the smaller value of min_replica_count or 1 will
be used.
default: '1'
optional: true
- name: accelerator_type
type: String
description: |-
Optional. Hardware accelerator type. Must also set accelerator_count if used.
One of ACCELERATOR_TYPE_UNSPECIFIED, NVIDIA_TESLA_K80, NVIDIA_TESLA_P100,
NVIDIA_TESLA_V100, NVIDIA_TESLA_P4, NVIDIA_TESLA_T4
optional: true
- {name: accelerator_count, type: Integer, description: Optional. The number of accelerators
to attach to a worker replica., optional: true}
outputs:
- {name: endpoint_name, type: String}
- {name: endpoint_dict, type: JsonObject}
implementation:
container:
image: python:3.9
command:
- sh
- -c
- (PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet --no-warn-script-location
'google-cloud-aiplatform==1.7.0' || PIP_DISABLE_PIP_VERSION_CHECK=1 python3
-m pip install --quiet --no-warn-script-location 'google-cloud-aiplatform==1.7.0'
--user) && "$0" "$@"
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def deploy_model_to_endpoint_for_Google_Cloud_Vertex_AI_Model(
model_name,
endpoint_name = None,
machine_type = "n1-standard-2",
min_replica_count = 1,
max_replica_count = 1,
accelerator_type = None,
accelerator_count = None,
#
# Uncomment when anyone requests these:
# deployed_model_display_name: str = None,
# traffic_percentage: int = 0,
# traffic_split: dict = None,
# service_account: str = None,
# explanation_metadata: "google.cloud.aiplatform_v1.types.explanation_metadata.ExplanationMetadata" = None,
# explanation_parameters: "google.cloud.aiplatform_v1.types.explanation.ExplanationParameters" = None,
#
# encryption_spec_key_name: str = None,
):
"""Deploys Google Cloud Vertex AI Model to a Google Cloud Vertex AI Endpoint.
Args:
model_name: Full resource name of a Google Cloud Vertex AI Model
endpoint_name: Optional. Full name of Google Cloud Vertex Endpoint. A new
endpoint is created if the name is not passed.
machine_type: The type of the machine. See the [list of machine types
supported for prediction
](https://cloud.google.com/vertex-ai/docs/predictions/configure-compute#machine-types).
Defaults to "n1-standard-2"
min_replica_count (int):
Optional. The minimum number of machine replicas this deployed
model will be always deployed on. If traffic against it increases,
it may dynamically be deployed onto more replicas, and as traffic
decreases, some of these extra replicas may be freed.
max_replica_count (int):
Optional. The maximum number of replicas this deployed model may
be deployed on when the traffic against it increases. If requested
value is too large, the deployment will error, but if deployment
succeeds then the ability to scale the model to that many replicas
is guaranteed (barring service outages). If traffic against the
deployed model increases beyond what its replicas at maximum may
handle, a portion of the traffic will be dropped. If this value
is not provided, the smaller value of min_replica_count or 1 will
be used.
accelerator_type (str):
Optional. Hardware accelerator type. Must also set accelerator_count if used.
One of ACCELERATOR_TYPE_UNSPECIFIED, NVIDIA_TESLA_K80, NVIDIA_TESLA_P100,
NVIDIA_TESLA_V100, NVIDIA_TESLA_P4, NVIDIA_TESLA_T4
accelerator_count (int):
Optional. The number of accelerators to attach to a worker replica.
"""
import json
from google.cloud import aiplatform
model = aiplatform.Model(model_name=model_name)
if endpoint_name:
endpoint = aiplatform.Endpoint(endpoint_name=endpoint_name)
else:
endpoint_display_name = model.display_name[:118] + "_endpoint"
endpoint = aiplatform.Endpoint.create(
display_name=endpoint_display_name,
project=model.project,
location=model.location,
# encryption_spec_key_name=encryption_spec_key_name,
labels={"component-source": "github-com-ark-kun-pipeline-components"},
)
endpoint = model.deploy(
endpoint=endpoint,
# deployed_model_display_name=deployed_model_display_name,
machine_type=machine_type,
min_replica_count=min_replica_count,
max_replica_count=max_replica_count,
accelerator_type=accelerator_type,
accelerator_count=accelerator_count,
# service_account=service_account,
# explanation_metadata=explanation_metadata,
# explanation_parameters=explanation_parameters,
# encryption_spec_key_name=encryption_spec_key_name,
)
endpoint_json = json.dumps(endpoint.to_dict(), indent=2)
print(endpoint_json)
return (endpoint.resource_name, endpoint_json)
def _serialize_json(obj) -> str:
if isinstance(obj, str):
return obj
import json
def default_serializer(obj):
if hasattr(obj, 'to_struct'):
return obj.to_struct()
else:
raise TypeError("Object of type '%s' is not JSON serializable and does not have .to_struct() method." % obj.__class__.__name__)
return json.dumps(obj, default=default_serializer, sort_keys=True)
def _serialize_str(str_value: str) -> str:
if not isinstance(str_value, str):
raise TypeError('Value "{}" has type "{}" instead of str.'.format(str(str_value), str(type(str_value))))
return str_value
import argparse
_parser = argparse.ArgumentParser(prog='Deploy model to endpoint for Google Cloud Vertex AI Model', description='Deploys Google Cloud Vertex AI Model to a Google Cloud Vertex AI Endpoint.')
_parser.add_argument("--model-name", dest="model_name", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--endpoint-name", dest="endpoint_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--machine-type", dest="machine_type", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--min-replica-count", dest="min_replica_count", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--max-replica-count", dest="max_replica_count", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--accelerator-type", dest="accelerator_type", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--accelerator-count", dest="accelerator_count", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("----output-paths", dest="_output_paths", type=str, nargs=2)
_parsed_args = vars(_parser.parse_args())
_output_files = _parsed_args.pop("_output_paths", [])
_outputs = deploy_model_to_endpoint_for_Google_Cloud_Vertex_AI_Model(**_parsed_args)
_output_serializers = [
_serialize_str,
_serialize_json,
]
import os
for idx, output_file in enumerate(_output_files):
try:
os.makedirs(os.path.dirname(output_file))
except OSError:
pass
with open(output_file, 'w') as f:
f.write(_output_serializers[idx](_outputs[idx]))
args:
- --model-name
- {inputValue: model_name}
- if:
cond: {isPresent: endpoint_name}
then:
- --endpoint-name
- {inputValue: endpoint_name}
- if:
cond: {isPresent: machine_type}
then:
- --machine-type
- {inputValue: machine_type}
- if:
cond: {isPresent: min_replica_count}
then:
- --min-replica-count
- {inputValue: min_replica_count}
- if:
cond: {isPresent: max_replica_count}
then:
- --max-replica-count
- {inputValue: max_replica_count}
- if:
cond: {isPresent: accelerator_type}
then:
- --accelerator-type
- {inputValue: accelerator_type}
- if:
cond: {isPresent: accelerator_count}
then:
- --accelerator-count
- {inputValue: accelerator_count}
- '----output-paths'
- {outputPath: endpoint_name}
- {outputPath: endpoint_dict}
@@ -1,297 +0,0 @@
name: Upload PyTorch model archive to Google Cloud Vertex AI
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/KFPv2_hell/components/google-cloud/Vertex_AI/Models/Upload_PyTorch_model_archive/workaround_for_buggy_KFPv2_compiler/component.yaml'}
inputs:
- {name: model_archive, type: PyTorchModelArchive}
- {name: torchserve_version, type: String, default: 0.6.0, optional: true}
- name: use_gpu
type: Boolean
default: "False"
optional: true
- {name: display_name, type: String, optional: true}
- {name: description, type: String, optional: true}
- {name: project, type: String, optional: true}
- {name: location, type: String, optional: true}
- {name: labels, type: JsonObject, optional: true}
- {name: staging_bucket, type: String, optional: true}
outputs:
- {name: model_name, type: String}
- {name: model_dict, type: JsonObject}
implementation:
container:
image: python:3.9
command:
- sh
- -c
- (PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet --no-warn-script-location
'google-cloud-aiplatform==1.13.1' 'google-cloud-build==3.8.3' || PIP_DISABLE_PIP_VERSION_CHECK=1
python3 -m pip install --quiet --no-warn-script-location 'google-cloud-aiplatform==1.13.1'
'google-cloud-build==3.8.3' --user) && "$0" "$@"
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def upload_PyTorch_model_archive_to_Google_Cloud_Vertex_AI(
model_archive_path,
torchserve_version = "0.6.0",
use_gpu = False,
display_name = None,
description = None,
# Uncomment when anyone requests these:
# instance_schema_uri: str = None,
# parameters_schema_uri: str = None,
# prediction_schema_uri: str = None,
# explanation_metadata: "google.cloud.aiplatform_v1.types.explanation_metadata.ExplanationMetadata" = None,
# explanation_parameters: "google.cloud.aiplatform_v1.types.explanation.ExplanationParameters" = None,
project = None,
location = None,
labels = None,
# encryption_spec_key_name: str = None,
staging_bucket = None,
):
import json
import os
from google.cloud import aiplatform
if not location:
location = os.environ.get("CLOUD_ML_REGION")
if not labels:
labels = {}
labels["component-source"] = "github-com-ark-kun-pipeline-components"
container_image_tag = torchserve_version + "-" + ("gpu" if use_gpu else "cpu")
container_image_uri = f"pytorch/torchserve:{container_image_tag}"
# Vertex Endpoints refuse to support non-Google container registries.
# We have to work around this to reduce user frustration
# TODO: Remove this code when Vertex Endpoints service starts supporting other container registries.
def copy_container_image(
src_container_image_uri,
dst_container_image_uri,
project_id,
):
from google.cloud.devtools import cloudbuild
from google import protobuf
build_client = cloudbuild.CloudBuildClient()
build_config = cloudbuild.Build(
images=[dst_container_image_uri],
steps=[
cloudbuild.BuildStep(
name="gcr.io/cloud-builders/docker",
entrypoint="bash",
args=[
"-exc",
'docker pull --quiet "$0" && docker tag "$0" "$1"',
src_container_image_uri,
dst_container_image_uri,
],
),
],
timeout=protobuf.duration_pb2.Duration(
seconds=1800,
),
)
build_operation = build_client.create_build(
project_id=project_id,
build=build_config,
)
try:
result = build_operation.result()
except:
print(f"Logs are available at [{build_operation.metadata.build.log_url}].")
raise
return result
project_id = aiplatform.initializer.global_config.project
mirrored_container_uri = f"gcr.io/{project_id}/container_mirror/{container_image_uri}"
# FIX: Only mirror when image does not exist
# docker does is unable to get the registry data from inside container (it cannot connecto to docker socket):
# docker.errors.DockerException: Error while fetching server API version: ('Connection aborted.', FileNotFoundError(2, 'No such file or directory'))
# import docker
# try:
# docker_client = docker.from_env()
# docker_client.images.get_registry_data(mirrored_container_uri)
# except docker.errors.NotFound:
if True:
print(f"Mirroring {container_image_uri} to {mirrored_container_uri}")
copy_container_image(
src_container_image_uri=container_image_uri,
dst_container_image_uri=mirrored_container_uri,
project_id=project_id,
)
container_image_uri = mirrored_container_uri
# End of container image mirroring code
model_archive_file_name = os.path.basename(model_archive_path)
model_archive_dir = os.path.dirname(model_archive_path)
model = aiplatform.Model.upload(
# FIX: Use public image or mirror the official image
#serving_container_image_uri="gcr.io/avolkov-31337/mirror/pytorch/torchserve",
serving_container_image_uri=container_image_uri,
artifact_uri=model_archive_dir,
serving_container_command=[
"bash",
"-exc",
'''
model_archive_uri="$0"
#model_archive_local_path=$(mktemp --suffix ".mar")
# For some reason the model must already be inside the model-store directory.
model_archive_local_path=./model-store/model.mar
# Downloading the model archive from GCS
# TODO: Fix gsutil bugs (requires project ID, has auth issues) and use gsutil instead.
# gsutil cp "$model_archive_uri" "$model_archive_local_path"
pip install google-cloud-storage
python -c '
import sys
from google.cloud import storage
model_archive_uri = sys.argv[1]
model_archive_local_path = sys.argv[2]
storage_client = storage.Client()
blob = storage.Blob.from_string(uri=model_archive_uri, client=storage_client)
blob.download_to_filename(filename=model_archive_local_path)
' "$model_archive_uri" "$model_archive_local_path"
#Note: config.properties is owned by root. Our user is not root.
echo "
service_envelope=json
# Needed for external access
inference_address=http://0.0.0.0:8080
management_address=http://0.0.0.0:8081
" > config2.properties
torchserve --start --foreground --no-config-snapshots --models main-model="$model_archive_local_path" --model-store ./model-store/ --ts-config config2.properties
''',
"$(AIP_STORAGE_URI)/" + model_archive_file_name,
],
serving_container_predict_route="/predictions/main-model",
#serving_container_predict_route="/v1/models/main-model:predict",
serving_container_health_route="/ping",
serving_container_ports=[8080],
display_name=display_name,
description=description,
# instance_schema_uri=instance_schema_uri,
# parameters_schema_uri=parameters_schema_uri,
# prediction_schema_uri=prediction_schema_uri,
# explanation_metadata=explanation_metadata,
# explanation_parameters=explanation_parameters,
project=project,
location=location,
labels=labels,
# encryption_spec_key_name=encryption_spec_key_name,
staging_bucket=staging_bucket,
)
model_json = json.dumps(model.to_dict(), indent=2)
print(model_json)
return (model.resource_name, model_json)
def _deserialize_bool(s) -> bool:
from distutils.util import strtobool
return strtobool(s) == 1
def _serialize_json(obj) -> str:
if isinstance(obj, str):
return obj
import json
def default_serializer(obj):
if hasattr(obj, 'to_struct'):
return obj.to_struct()
else:
raise TypeError("Object of type '%s' is not JSON serializable and does not have .to_struct() method." % obj.__class__.__name__)
return json.dumps(obj, default=default_serializer, sort_keys=True)
def _serialize_str(str_value: str) -> str:
if not isinstance(str_value, str):
raise TypeError('Value "{}" has type "{}" instead of str.'.format(str(str_value), str(type(str_value))))
return str_value
import json
import argparse
_parser = argparse.ArgumentParser(prog='Upload PyTorch model archive to Google Cloud Vertex AI', description='')
_parser.add_argument("--model-archive", dest="model_archive_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--torchserve-version", dest="torchserve_version", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--use-gpu", dest="use_gpu", type=_deserialize_bool, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--display-name", dest="display_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--description", dest="description", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--project", dest="project", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--location", dest="location", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--labels", dest="labels", type=json.loads, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--staging-bucket", dest="staging_bucket", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("----output-paths", dest="_output_paths", type=str, nargs=2)
_parsed_args = vars(_parser.parse_args())
_output_files = _parsed_args.pop("_output_paths", [])
_outputs = upload_PyTorch_model_archive_to_Google_Cloud_Vertex_AI(**_parsed_args)
_output_serializers = [
_serialize_str,
_serialize_json,
]
import os
for idx, output_file in enumerate(_output_files):
try:
os.makedirs(os.path.dirname(output_file))
except OSError:
pass
with open(output_file, 'w') as f:
f.write(_output_serializers[idx](_outputs[idx]))
args:
- --model-archive
- {inputPath: model_archive}
- if:
cond: {isPresent: torchserve_version}
then:
- --torchserve-version
- {inputValue: torchserve_version}
- if:
cond: {isPresent: use_gpu}
then:
- --use-gpu
- {inputValue: use_gpu}
- if:
cond: {isPresent: display_name}
then:
- --display-name
- {inputValue: display_name}
- if:
cond: {isPresent: description}
then:
- --description
- {inputValue: description}
- if:
cond: {isPresent: project}
then:
- --project
- {inputValue: project}
- if:
cond: {isPresent: location}
then:
- --location
- {inputValue: location}
- if:
cond: {isPresent: labels}
then:
- --labels
- {inputValue: labels}
- if:
cond: {isPresent: staging_bucket}
then:
- --staging-bucket
- {inputValue: staging_bucket}
- '----output-paths'
- {outputPath: model_name}
- {outputPath: model_dict}
@@ -1,181 +0,0 @@
name: Upload Scikit learn pickle model to Google Cloud Vertex AI
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/KFPv2_hell/components/google-cloud/Vertex_AI/Models/Upload_Scikit-learn_pickle_model/workaround_for_buggy_KFPv2_compiler/component.yaml'}
inputs:
- {name: model, type: ScikitLearnPickleModel}
- {name: sklearn_version, type: String, optional: true}
- {name: display_name, type: String, optional: true}
- {name: description, type: String, optional: true}
- {name: project, type: String, optional: true}
- {name: location, type: String, optional: true}
- {name: labels, type: JsonObject, optional: true}
- {name: staging_bucket, type: String, optional: true}
outputs:
- {name: model_name, type: String}
- {name: model_dict, type: JsonObject}
implementation:
container:
image: python:3.9
command:
- sh
- -c
- (PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet --no-warn-script-location
'google-cloud-aiplatform==1.16.0' || PIP_DISABLE_PIP_VERSION_CHECK=1 python3
-m pip install --quiet --no-warn-script-location 'google-cloud-aiplatform==1.16.0'
--user) && "$0" "$@"
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def upload_Scikit_learn_pickle_model_to_Google_Cloud_Vertex_AI(
model_path,
sklearn_version = None,
display_name = None,
description = None,
# Uncomment when anyone requests these:
# instance_schema_uri: str = None,
# parameters_schema_uri: str = None,
# prediction_schema_uri: str = None,
# explanation_metadata: "google.cloud.aiplatform_v1.types.explanation_metadata.ExplanationMetadata" = None,
# explanation_parameters: "google.cloud.aiplatform_v1.types.explanation.ExplanationParameters" = None,
project = None,
location = None,
labels = None,
# encryption_spec_key_name: str = None,
staging_bucket = None,
):
import json
import os
import shutil
import tempfile
from google.cloud import aiplatform
if not location:
location = os.environ.get("CLOUD_ML_REGION")
if not labels:
labels = {}
labels["component-source"] = "github-com-ark-kun-pipeline-components"
# The serving container decides the model type based on the model file extension.
# So we need to rename the mode file (e.g. /tmp/inputs/model/data) to *.pkl
_, renamed_model_path = tempfile.mkstemp(suffix=".pkl")
shutil.copyfile(src=model_path, dst=renamed_model_path)
model = aiplatform.Model.upload_scikit_learn_model_file(
model_file_path=renamed_model_path,
sklearn_version=sklearn_version,
display_name=display_name,
description=description,
# instance_schema_uri=instance_schema_uri,
# parameters_schema_uri=parameters_schema_uri,
# prediction_schema_uri=prediction_schema_uri,
# explanation_metadata=explanation_metadata,
# explanation_parameters=explanation_parameters,
project=project,
location=location,
labels=labels,
# encryption_spec_key_name=encryption_spec_key_name,
staging_bucket=staging_bucket,
)
model_json = json.dumps(model.to_dict(), indent=2)
print(model_json)
return (model.resource_name, model_json)
def _serialize_json(obj) -> str:
if isinstance(obj, str):
return obj
import json
def default_serializer(obj):
if hasattr(obj, 'to_struct'):
return obj.to_struct()
else:
raise TypeError("Object of type '%s' is not JSON serializable and does not have .to_struct() method." % obj.__class__.__name__)
return json.dumps(obj, default=default_serializer, sort_keys=True)
def _serialize_str(str_value: str) -> str:
if not isinstance(str_value, str):
raise TypeError('Value "{}" has type "{}" instead of str.'.format(str(str_value), str(type(str_value))))
return str_value
import json
import argparse
_parser = argparse.ArgumentParser(prog='Upload Scikit learn pickle model to Google Cloud Vertex AI', description='')
_parser.add_argument("--model", dest="model_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--sklearn-version", dest="sklearn_version", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--display-name", dest="display_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--description", dest="description", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--project", dest="project", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--location", dest="location", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--labels", dest="labels", type=json.loads, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--staging-bucket", dest="staging_bucket", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("----output-paths", dest="_output_paths", type=str, nargs=2)
_parsed_args = vars(_parser.parse_args())
_output_files = _parsed_args.pop("_output_paths", [])
_outputs = upload_Scikit_learn_pickle_model_to_Google_Cloud_Vertex_AI(**_parsed_args)
_output_serializers = [
_serialize_str,
_serialize_json,
]
import os
for idx, output_file in enumerate(_output_files):
try:
os.makedirs(os.path.dirname(output_file))
except OSError:
pass
with open(output_file, 'w') as f:
f.write(_output_serializers[idx](_outputs[idx]))
args:
- --model
- {inputPath: model}
- if:
cond: {isPresent: sklearn_version}
then:
- --sklearn-version
- {inputValue: sklearn_version}
- if:
cond: {isPresent: display_name}
then:
- --display-name
- {inputValue: display_name}
- if:
cond: {isPresent: description}
then:
- --description
- {inputValue: description}
- if:
cond: {isPresent: project}
then:
- --project
- {inputValue: project}
- if:
cond: {isPresent: location}
then:
- --location
- {inputValue: location}
- if:
cond: {isPresent: labels}
then:
- --labels
- {inputValue: labels}
- if:
cond: {isPresent: staging_bucket}
then:
- --staging-bucket
- {inputValue: staging_bucket}
- '----output-paths'
- {outputPath: model_name}
- {outputPath: model_dict}
@@ -1,190 +0,0 @@
name: Upload Tensorflow model to Google Cloud Vertex AI
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/KFPv2_hell/components/google-cloud/Vertex_AI/Models/Upload_Tensorflow_model/workaround_for_buggy_KFPv2_compiler/component.yaml'}
inputs:
- {name: model, type: TensorflowSavedModel}
- {name: tensorflow_version, type: String, optional: true}
- name: use_gpu
type: Boolean
default: "False"
optional: true
- {name: display_name, type: String, optional: true}
- {name: description, type: String, optional: true}
- {name: project, type: String, optional: true}
- {name: location, type: String, optional: true}
- {name: labels, type: JsonObject, optional: true}
- {name: staging_bucket, type: String, optional: true}
outputs:
- {name: model_name, type: String}
- {name: model_dict, type: JsonObject}
implementation:
container:
image: python:3.9
command:
- sh
- -c
- (PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet --no-warn-script-location
'google-cloud-aiplatform==1.16.0' || PIP_DISABLE_PIP_VERSION_CHECK=1 python3
-m pip install --quiet --no-warn-script-location 'google-cloud-aiplatform==1.16.0'
--user) && "$0" "$@"
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def upload_Tensorflow_model_to_Google_Cloud_Vertex_AI(
model_path,
tensorflow_version = None,
use_gpu = False,
display_name = None,
description = None,
# Uncomment when anyone requests these:
# instance_schema_uri: str = None,
# parameters_schema_uri: str = None,
# prediction_schema_uri: str = None,
# explanation_metadata: "google.cloud.aiplatform_v1.types.explanation_metadata.ExplanationMetadata" = None,
# explanation_parameters: "google.cloud.aiplatform_v1.types.explanation.ExplanationParameters" = None,
project = None,
location = None,
labels = None,
# encryption_spec_key_name: str = None,
staging_bucket = None,
):
import json
import os
from google.cloud import aiplatform
if not location:
location = os.environ.get("CLOUD_ML_REGION")
if not labels:
labels = {}
labels["component-source"] = "github-com-ark-kun-pipeline-components"
model = aiplatform.Model.upload_tensorflow_saved_model(
saved_model_dir=model_path,
tensorflow_version=tensorflow_version,
use_gpu=use_gpu,
display_name=display_name,
description=description,
# instance_schema_uri=instance_schema_uri,
# parameters_schema_uri=parameters_schema_uri,
# prediction_schema_uri=prediction_schema_uri,
# explanation_metadata=explanation_metadata,
# explanation_parameters=explanation_parameters,
project=project,
location=location,
labels=labels,
# encryption_spec_key_name=encryption_spec_key_name,
staging_bucket=staging_bucket,
)
model_json = json.dumps(model.to_dict(), indent=2)
print(model_json)
return (model.resource_name, model_json)
def _deserialize_bool(s) -> bool:
from distutils.util import strtobool
return strtobool(s) == 1
def _serialize_json(obj) -> str:
if isinstance(obj, str):
return obj
import json
def default_serializer(obj):
if hasattr(obj, 'to_struct'):
return obj.to_struct()
else:
raise TypeError("Object of type '%s' is not JSON serializable and does not have .to_struct() method." % obj.__class__.__name__)
return json.dumps(obj, default=default_serializer, sort_keys=True)
def _serialize_str(str_value: str) -> str:
if not isinstance(str_value, str):
raise TypeError('Value "{}" has type "{}" instead of str.'.format(str(str_value), str(type(str_value))))
return str_value
import json
import argparse
_parser = argparse.ArgumentParser(prog='Upload Tensorflow model to Google Cloud Vertex AI', description='')
_parser.add_argument("--model", dest="model_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--tensorflow-version", dest="tensorflow_version", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--use-gpu", dest="use_gpu", type=_deserialize_bool, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--display-name", dest="display_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--description", dest="description", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--project", dest="project", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--location", dest="location", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--labels", dest="labels", type=json.loads, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--staging-bucket", dest="staging_bucket", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("----output-paths", dest="_output_paths", type=str, nargs=2)
_parsed_args = vars(_parser.parse_args())
_output_files = _parsed_args.pop("_output_paths", [])
_outputs = upload_Tensorflow_model_to_Google_Cloud_Vertex_AI(**_parsed_args)
_output_serializers = [
_serialize_str,
_serialize_json,
]
import os
for idx, output_file in enumerate(_output_files):
try:
os.makedirs(os.path.dirname(output_file))
except OSError:
pass
with open(output_file, 'w') as f:
f.write(_output_serializers[idx](_outputs[idx]))
args:
- --model
- {inputPath: model}
- if:
cond: {isPresent: tensorflow_version}
then:
- --tensorflow-version
- {inputValue: tensorflow_version}
- if:
cond: {isPresent: use_gpu}
then:
- --use-gpu
- {inputValue: use_gpu}
- if:
cond: {isPresent: display_name}
then:
- --display-name
- {inputValue: display_name}
- if:
cond: {isPresent: description}
then:
- --description
- {inputValue: description}
- if:
cond: {isPresent: project}
then:
- --project
- {inputValue: project}
- if:
cond: {isPresent: location}
then:
- --location
- {inputValue: location}
- if:
cond: {isPresent: labels}
then:
- --labels
- {inputValue: labels}
- if:
cond: {isPresent: staging_bucket}
then:
- --staging-bucket
- {inputValue: staging_bucket}
- '----output-paths'
- {outputPath: model_name}
- {outputPath: model_dict}
@@ -1,181 +0,0 @@
name: Upload XGBoost model to Google Cloud Vertex AI
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/google-cloud/Vertex_AI/Models/Upload_XGBoost_model/workaround_for_buggy_KFPv2_compiler/component.yaml'}
inputs:
- {name: model, type: XGBoostModel}
- {name: xgboost_version, type: String, optional: true}
- {name: display_name, type: String, optional: true}
- {name: description, type: String, optional: true}
- {name: project, type: String, optional: true}
- {name: location, type: String, optional: true}
- {name: labels, type: JsonObject, optional: true}
- {name: staging_bucket, type: String, optional: true}
outputs:
- {name: model_name, type: String}
- {name: model_dict, type: JsonObject}
implementation:
container:
image: python:3.9
command:
- sh
- -c
- (PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet --no-warn-script-location
'google-cloud-aiplatform==1.16.0' || PIP_DISABLE_PIP_VERSION_CHECK=1 python3
-m pip install --quiet --no-warn-script-location 'google-cloud-aiplatform==1.16.0'
--user) && "$0" "$@"
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def upload_XGBoost_model_to_Google_Cloud_Vertex_AI(
model_path,
xgboost_version = None,
display_name = None,
description = None,
# Uncomment when anyone requests these:
# instance_schema_uri: str = None,
# parameters_schema_uri: str = None,
# prediction_schema_uri: str = None,
# explanation_metadata: "google.cloud.aiplatform_v1.types.explanation_metadata.ExplanationMetadata" = None,
# explanation_parameters: "google.cloud.aiplatform_v1.types.explanation.ExplanationParameters" = None,
project = None,
location = None,
labels = None,
# encryption_spec_key_name: str = None,
staging_bucket = None,
):
import json
import os
import shutil
import tempfile
from google.cloud import aiplatform
if not location:
location = os.environ.get("CLOUD_ML_REGION")
if not labels:
labels = {}
labels["component-source"] = "github-com-ark-kun-pipeline-components"
# The serving container decides the model type based on the model file extension.
# So we need to rename the mode file (e.g. /tmp/inputs/model/data) to *.pkl
_, renamed_model_path = tempfile.mkstemp(suffix=".pkl")
shutil.copyfile(src=model_path, dst=renamed_model_path)
model = aiplatform.Model.upload_xgboost_model_file(
model_file_path=renamed_model_path,
xgboost_version=xgboost_version,
display_name=display_name,
description=description,
# instance_schema_uri=instance_schema_uri,
# parameters_schema_uri=parameters_schema_uri,
# prediction_schema_uri=prediction_schema_uri,
# explanation_metadata=explanation_metadata,
# explanation_parameters=explanation_parameters,
project=project,
location=location,
labels=labels,
# encryption_spec_key_name=encryption_spec_key_name,
staging_bucket=staging_bucket,
)
model_json = json.dumps(model.to_dict(), indent=2)
print(model_json)
return (model.resource_name, model_json)
def _serialize_json(obj) -> str:
if isinstance(obj, str):
return obj
import json
def default_serializer(obj):
if hasattr(obj, 'to_struct'):
return obj.to_struct()
else:
raise TypeError("Object of type '%s' is not JSON serializable and does not have .to_struct() method." % obj.__class__.__name__)
return json.dumps(obj, default=default_serializer, sort_keys=True)
def _serialize_str(str_value: str) -> str:
if not isinstance(str_value, str):
raise TypeError('Value "{}" has type "{}" instead of str.'.format(str(str_value), str(type(str_value))))
return str_value
import json
import argparse
_parser = argparse.ArgumentParser(prog='Upload XGBoost model to Google Cloud Vertex AI', description='')
_parser.add_argument("--model", dest="model_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--xgboost-version", dest="xgboost_version", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--display-name", dest="display_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--description", dest="description", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--project", dest="project", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--location", dest="location", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--labels", dest="labels", type=json.loads, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--staging-bucket", dest="staging_bucket", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("----output-paths", dest="_output_paths", type=str, nargs=2)
_parsed_args = vars(_parser.parse_args())
_output_files = _parsed_args.pop("_output_paths", [])
_outputs = upload_XGBoost_model_to_Google_Cloud_Vertex_AI(**_parsed_args)
_output_serializers = [
_serialize_str,
_serialize_json,
]
import os
for idx, output_file in enumerate(_output_files):
try:
os.makedirs(os.path.dirname(output_file))
except OSError:
pass
with open(output_file, 'w') as f:
f.write(_output_serializers[idx](_outputs[idx]))
args:
- --model
- {inputPath: model}
- if:
cond: {isPresent: xgboost_version}
then:
- --xgboost-version
- {inputValue: xgboost_version}
- if:
cond: {isPresent: display_name}
then:
- --display-name
- {inputValue: display_name}
- if:
cond: {isPresent: description}
then:
- --description
- {inputValue: description}
- if:
cond: {isPresent: project}
then:
- --project
- {inputValue: project}
- if:
cond: {isPresent: location}
then:
- --location
- {inputValue: location}
- if:
cond: {isPresent: labels}
then:
- --labels
- {inputValue: labels}
- if:
cond: {isPresent: staging_bucket}
then:
- --staging-bucket
- {inputValue: staging_bucket}
- '----output-paths'
- {outputPath: model_name}
- {outputPath: model_dict}
@@ -1,35 +0,0 @@
name: Download from GCS
inputs:
- {name: GCS path, type: String}
outputs:
- {name: Data}
metadata:
annotations:
author: Alexey Volkov <alexey.volkov@ark-kun.com>
canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/google-cloud/storage/download/workaround_for_buggy_KFPv2_compiler/component.yaml'
implementation:
container:
image: google/cloud-sdk
command:
- bash # Pattern comparison only works in Bash
- -ex
- -c
- |
if [ -n "${GOOGLE_APPLICATION_CREDENTIALS}" ]; then
gcloud auth activate-service-account --key-file="${GOOGLE_APPLICATION_CREDENTIALS}"
fi
uri="$0"
output_path="$1"
# Checking whether the URI points to a single blob, a directory or a URI pattern
# URI points to a blob when that URI does not end with slash and listing that URI only yields the same URI
if [[ "$uri" != */ ]] && (gsutil ls "$uri" | grep --fixed-strings --line-regexp "$uri"); then
mkdir -p "$(dirname "$output_path")"
gsutil -m cp -r "$uri" "$output_path"
else
mkdir -p "$output_path" # When source path is a directory, gsutil requires the destination to also be a directory
gsutil -m rsync -r "$uri" "$output_path" # gsutil cp has different path handling than Linux cp. It always puts the source directory (name) inside the destination directory. gsutil rsync does not have that problem.
fi
- inputValue: GCS path
- outputPath: Data
@@ -1,112 +0,0 @@
name: Load image classification model from tfhub
description: |
Loads specified model from TFHub, creates layer to receive additional (3 channel) imagery data.
Args:
class_names (Sequence[str]):
Sequence of strings of categories for classification corresponding to input data.
loaded_model_path (str):
Output path for the loaded model.
image_size_path (str):
Output path for the model expected image size.
model_name (Optional[str]):
Name of the pre-trained image classification model to load from TFHub.
Eligible model_name:
- efficientnetv2-s
- efficientnetv2-m
- efficientnetv2-l
- efficientnetv2-s-21k
- efficientnetv2-m-21k
- efficientnetv2-l-21k
- efficientnetv2-xl-21k
- efficientnetv2-b0-21k
- efficientnetv2-b1-21k
- efficientnetv2-b2-21k
- efficientnetv2-b3-21k
- efficientnetv2-s-21k-ft1k
- efficientnetv2-m-21k-ft1k
- efficientnetv2-l-21k-ft1k
- efficientnetv2-xl-21k-ft1k
- efficientnetv2-b0-21k-ft1k
- efficientnetv2-b1-21k-ft1k
- efficientnetv2-b2-21k-ft1k
- efficientnetv2-b3-21k-ft1k
- efficientnetv2-b0
- efficientnetv2-b1
- efficientnetv2-b2
- efficientnetv2-b3
- efficientnet_b0
- efficientnet_b1
- efficientnet_b2
- efficientnet_b3
- efficientnet_b4
- efficientnet_b5
- efficientnet_b6
- efficientnet_b7
- bit_s-r50x1
- inception_v3
- inception_resnet_v2
- resnet_v1_50
- resnet_v1_101
- resnet_v1_152
- resnet_v2_50
- resnet_v2_101
- resnet_v2_152
- nasnet_large
- nasnet_mobile
- pnasnet_large
- mobilenet_v2_100_224
- mobilenet_v2_130_224
- mobilenet_v2_140_224
- mobilenet_v3_small_100_224
- mobilenet_v3_small_075_224
- mobilenet_v3_large_100_224
- mobilenet_v3_large_075_224
dropout_rate (Optional[float]):
Fraction of input units to drop in the last layer. Value should be between 0.0 and 1.0.
trainable (Optional[bool]):
If true fine tuning will be performed on entire Hub model. If false only additional
layers will be trained.
l2_regularization_penalty (Optional[float]):
l2 regularization penalty.
inputs:
- {name: class_names, type: 'typing.List[str]', description: List of class names corresponding
to the input image data}
- {name: model_name, type: String, description: Name of the TFHub model to load, default: efficientnetv2-xl-21k,
optional: true}
- {name: dropout_rate, type: Float, description: Dropout rate, default: '0.2', optional: true}
- name: trainable
type: Boolean
description: True if fine tuning should be performed
default: "True"
optional: true
- {name: l2_regularization_penalty, type: Float, description: Regularization penalty,
default: '0.0001', optional: true}
outputs:
- {name: loaded_model_path, type: TensorflowSavedModel, description: Output path for
the loaded model}
- {name: image_size_path, type: HeightWidth}
implementation:
container:
image: us-docker.pkg.dev/vertex-ai/ready-to-go-image-classification/image-components:v0.1
# command is a list of strings (command-line arguments).
# The YAML language has two syntaxes for lists and you can use either of them.
# Here we use the "flow syntax" - comma-separated strings inside square brackets.
command: [
python3,
# Path of the program inside the container
/pipelines/component/src/loading_component.py,
--loaded-model-path,
{outputPath: loaded_model_path},
--class-names,
{inputValue: class_names},
--model-name,
{inputValue: model_name},
--dropout-rate,
{inputValue: dropout_rate},
--trainable,
{inputValue: trainable},
--l2-regularization-penalty,
{inputValue: l2_regularization_penalty},
--image-size-path,
{outputPath: image_size_path},
]
@@ -1,62 +0,0 @@
# python3 -m pip install "kfp<2.0.0" "google-cloud-aiplatform>=1.16.0" --upgrade --quiet
from kfp import components
from kfp.v2 import dsl
# %% Loading components
upload_Tensorflow_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url('https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_Tensorflow_model/component.yaml')
deploy_model_to_endpoint_op = components.load_component_from_url('https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Deploy_to_endpoint/component.yaml')
transcode_imagedataset_tfrecord_from_csv_op = components.load_component_from_url('https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/main/community-content/pipeline_components/image_ml_model_training/transcode_tfrecord_image_dataset_from_csv/component.yaml')
load_image_classification_model_from_tfhub_op = components.load_component_from_url('https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/b5b65198a6c2ffe8c0fa2aa70127e3325752df68/community-content/pipeline_components/image_ml_model_training/load_image_classification_model/component.yaml')
preprocess_image_data_op = components.load_component_from_url('https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/main/community-content/pipeline_components/image_ml_model_training/preprocess_image_data/component.yaml')
train_tensorflow_image_classification_model_op = components.load_component_from_url('https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/main/community-content/pipeline_components/image_ml_model_training/train_image_classification_model/component.yaml')
# %% Pipeline definition
def image_classification_pipeline():
class_names = ['daisy', 'dandelion', 'roses', 'sunflowers', 'tulips']
csv_image_data_path = 'gs://cloud-samples-data/ai-platform/flowers/flowers.csv'
deploy_model = False
image_data = dsl.importer(
artifact_uri=csv_image_data_path, artifact_class=dsl.Dataset).output
image_tfrecord_data = transcode_imagedataset_tfrecord_from_csv_op(
csv_image_data_path=image_data,
class_names=class_names
).outputs['tfrecord_image_data_path']
loaded_model_outputs = load_image_classification_model_from_tfhub_op(
class_names=class_names,
).outputs
preprocessed_data = preprocess_image_data_op(
image_tfrecord_data,
height_width_path=loaded_model_outputs['image_size_path'],
).outputs
trained_model = (train_tensorflow_image_classification_model_op(
preprocessed_training_data_path = preprocessed_data['preprocessed_training_data_path'],
preprocessed_validation_data_path = preprocessed_data['preprocessed_validation_data_path'],
model_path=loaded_model_outputs['loaded_model_path']).
set_cpu_limit('96').
set_memory_limit('128G').
add_node_selector_constraint('cloud.google.com/gke-accelerator', 'NVIDIA_TESLA_A100').
set_gpu_limit('8').
outputs['trained_model_path'])
vertex_model_name = upload_Tensorflow_model_to_Google_Cloud_Vertex_AI_op(
model=trained_model,
).outputs['model_name']
# Deploying the model might incur additional costs over time
if deploy_model:
vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=vertex_model_name,
).outputs['endpoint_name']
pipeline_func = image_classification_pipeline
# %% Pipeline submission
if __name__ == '__main__':
from google.cloud import aiplatform
aiplatform.PipelineJob.from_pipeline_func(pipeline_func=pipeline_func).submit()
@@ -1,57 +0,0 @@
name: Preprocess image data
description: |
Preprocess the image data and split between train and validation.
Args:
input_data_path (str):
Input path for the TFRecord image data. Data will be formatted as 'label' (encoded image
label), and 'image_raw' (the binary string of the image data).
height_width_path (str):
Path to square height and width to resize images to. File should contain single float value.
Value is dependent on training model.
preprocessed_training_data_path (str):
Output path for the TFRecord training data. Data will be formatted as 'label' (encoded image
label), and 'image_raw' (the binary string of the image data).
preprocessed_validation_data_path (str):
Output path for the TFRecord validation data. Data will be formatted as 'label' (encoded
image label), and 'image_raw' (the binary string of the image data).
validation_split (Optional[float]):
Fraction of data that will make up validation dataset. Value should be between 0.0 and 1.0.
seed (Optional[int]):
The global random seed to ensure the system gets a unique random sequence
that is deterministic (https://www.tensorflow.org/api_docs/python/tf/random/set_seed).
inputs:
- {name: input_data_path, type: ImageDatasetTFRecord, description: 'Input path for
the TFRecord image data,'}
- {name: height_width_path, type: HeightWidth, description: 'Path to square height and width to
resize images to,'}
- {name: validation_split, type: Float, description: 'Fraction of data that will make
up validation dataset,', default: '0.2', optional: true}
- {name: seed, type: Integer, description: Random seed, default: '0', optional: true}
outputs:
- {name: preprocessed_training_data_path, type: ImageDatasetTFRecord, description: 'Output
path for the training data,'}
- {name: preprocessed_validation_data_path, type: ImageDatasetTFRecord, description: 'Output
path for the validation data,'}
implementation:
container:
image: us-docker.pkg.dev/vertex-ai/ready-to-go-image-classification/image-components:v0.1
# command is a list of strings (command-line arguments).
# The YAML language has two syntaxes for lists and you can use either of them.
# Here we use the "flow syntax" - comma-separated strings inside square brackets.
command: [
python3,
# Path of the program inside the container
/pipelines/component/src/preprocessing_component.py,
--input-data-path,
{inputPath: input_data_path},
--height-width-path,
{inputPath: height_width_path},
--validation-split,
{inputValue: validation_split},
--seed,
{inputValue: seed},
--preprocessed-training-data-path,
{outputPath: preprocessed_training_data_path},
--preprocessed-validation-data-path,
{outputPath: preprocessed_validation_data_path},
]
@@ -1,90 +0,0 @@
name: Train tensorflow image classification model
description: |
Creates a trained image classification TensorFlow model.
Args:
preprocessed_training_data_path (str):
Input path to the TFRecord training data. Data will be formatted as 'label' (encoded image
label), and 'image_raw' (the binary string of the image data).
preprocessed_validation_data_path (str):
Input path to the TFRecord validation data. Data will be formatted as 'label' (encoded
image label), and 'image_raw' (the binary string of the image data).
model_path (str):
Input path to the loaded pre-trained model.
trained_model_path (str):
Output path to save the trained model to.
optimizer_name (Optional[str]):
Name of the tf.keras optimizer. Available optimizers are listed at
https://keras.io/api/optimizers/
optimizer_parameters (Optional[Dict[str, str]]):
Optimizer parameters.
loss_function_name (Optional[str]):
Name of the loss function.
loss_function_parameters (Optional[Dict[str, str]]):
Loss function parameters.
number_of_epochs (Optional[int]):
Number of training iterations over data.
metric_names (Optional[Sequence[str]]):
List of tf.keras.metrics to be evaluated by the model during training and testing. Available
metrics are listed at https://keras.io/api/metrics/.
seed Optional(int):
The global random seed to ensure the system gets a unique random sequence
that is deterministic (https://www.tensorflow.org/api_docs/python/tf/random/set_seed).
inputs:
- {name: preprocessed_training_data_path, type: ImageDatasetTFRecord, description: 'Input
path for the training data,'}
- {name: preprocessed_validation_data_path, type: ImageDatasetTFRecord, description: 'Input
path for the validation data,'}
- {name: model_path, type: TensorflowSavedModel, description: 'Input path for the
model,'}
- {name: optimizer_name, type: String, description: 'Name of the optimizer,', default: SGD,
optional: true}
- {name: optimizer_parameters, type: 'typing.Dict[str, str]', description: 'Optimizer
parameters,', default: '{}', optional: true}
- {name: loss_function_name, type: String, description: 'Name of the loss function,',
default: CategoricalCrossentropy, optional: true}
- {name: loss_function_parameters, type: 'typing.Dict[str, str]', description: 'Loss
function parameters,', default: '{}', optional: true}
- {name: number_of_epochs, type: Integer, description: 'Number of epochs,', default: '10',
optional: true}
- {name: metric_names, type: 'typing.List[str]', description: 'List of metrics to
use,', default: '["accuracy"]', optional: true}
- {name: seed, type: Integer, description: 'Random seed,', default: '0', optional: true}
- {name: batch_size, type: Integer, description: Batch size, default: '16', optional: true}
outputs:
- {name: trained_model_path, type: TensorflowSavedModel, description: 'Output path
for the saved model,'}
implementation:
container:
image: us-docker.pkg.dev/vertex-ai/ready-to-go-image-classification/image-components:v0.1
# command is a list of strings (command-line arguments).
# The YAML language has two syntaxes for lists and you can use either of them.
# Here we use the "flow syntax" - comma-separated strings inside square brackets.
command: [
python3,
# Path of the program inside the container
/pipelines/component/src/training_component.py,
--preprocessed-training-data-path,
{inputPath: preprocessed_training_data_path},
--preprocessed-validation-data-path,
{inputPath: preprocessed_validation_data_path},
--model-path,
{inputPath: model_path},
--trained-model-path,
{outputPath: trained_model_path},
--optimizer-name,
{inputValue: optimizer_name},
--loss-function-name,
{inputValue: loss_function_name},
--number-of-epochs,
{inputValue: number_of_epochs},
--seed,
{inputValue: seed},
--batch-size,
{inputValue: batch_size},
--metric-names,
{inputValue: metric_names},
--optimizer-parameters,
{inputValue: optimizer_parameters},
--loss-function-parameters,
{inputValue: loss_function_parameters},
]
@@ -1,37 +0,0 @@
name: Transcode imagedataset tfrecord from csv
description: |
Transcodes CSV Data into TFRecord file of TFExamples.
Args:
csv_image_data_path (str):
Path to the CSV image data. Data must include 'image_filepath' (Path to image file) and
'image_label' (output for a prediction) fields.
class_names (Sequence[str]):
Sequence of strings of categories for classification corresponding to input data.
tfrecord_image_data_path (str):
Output path for the TFRecord image data. Data will be formatted as 'label' (encoded image
label), and 'image_raw' (the binary string of the image data).
inputs:
- {name: csv_image_data_path, type: ImageDatasetCSV, description: Input path for the
CSV image data}
- {name: class_names, type: 'typing.List[str]', description: List of class names corresponding
to the input image data}
outputs:
- {name: tfrecord_image_data_path, type: ImageDatasetTFRecord, description: Output
path for the TFRecord image data}
implementation:
container:
image: us-docker.pkg.dev/vertex-ai/ready-to-go-image-classification/image-components:v0.1
# command is a list of strings (command-line arguments).
# The YAML language has two syntaxes for lists and you can use either of them.
# Here we use the "flow syntax" - comma-separated strings inside square brackets.
command: [
python3,
# Path of the program inside the container
/pipelines/component/src/transcoding_csv_component.py,
--csv-image-data-path,
{inputPath: csv_image_data_path},
--tfrecord-image-data-path,
{outputPath: tfrecord_image_data_path},
--class-names,
{inputValue: class_names},
]
@@ -1,39 +0,0 @@
name: Transcode imagedataset tfrecord from jsonlines
description: |
Transcodes JSONL Data into TFRecord file of TFExamples.
Args:
jsonl_image_data_path (str):
Input path for the JSONL image data
Path to the JSONL image data. Each line corresponds to a JSON input describing an image.
Schema follows AutoML image classification JSONL format
https://cloud.google.com/vertex-ai/docs/image-data/classification/prepare-data#json-lines.
class_names (Sequence[str]):
Sequence of strings of categories for classification corresponding to input data.
tfrecord_image_data_path (str):
Output path for the TFRecord image data. Data will be formatted as 'label' (encoded image
label), and 'image_raw' (the binary string of the image data).
inputs:
- {name: jsonl_image_data_path, type: ImageDatasetJsonLines, description: Input path
for the JSONL image data}
- {name: class_names, type: 'typing.List[str]', description: List of class names corresponding
to the input image data}
outputs:
- {name: tfrecord_image_data_path, type: ImageDatasetTFRecord, description: Output
path for the TFRecord image data}
implementation:
container:
image: us-docker.pkg.dev/vertex-ai/ready-to-go-image-classification/image-components:v0.1
# command is a list of strings (command-line arguments).
# The YAML language has two syntaxes for lists and you can use either of them.
# Here we use the "flow syntax" - comma-separated strings inside square brackets.
command: [
python3,
# Path of the program inside the container
/pipelines/component/src/transcoding_jsonl_component.py,
--jsonl-image-data-path,
{inputPath: jsonl_image_data_path},
--tfrecord-image-data-path,
{outputPath: tfrecord_image_data_path},
--class-names,
{inputValue: class_names},
]
@@ -1,113 +0,0 @@
name: Binarize column using Pandas on CSV data
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/pandas/Binarize_column/in_CSV_format/component.yaml'}
inputs:
- {name: table, type: CSV}
- {name: column_name, type: String}
- {name: predicate, type: String, default: '> 0', optional: true}
- {name: new_column_name, type: String, optional: true}
- name: keep_original_column
type: Boolean
default: "False"
optional: true
outputs:
- {name: transformed_table, type: CSV}
implementation:
container:
image: python:3.9
command:
- sh
- -c
- (PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet --no-warn-script-location
'pandas==1.4.3' || PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet
--no-warn-script-location 'pandas==1.4.3' --user) && "$0" "$@"
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def _make_parent_dirs_and_return_path(file_path: str):
import os
os.makedirs(os.path.dirname(file_path), exist_ok=True)
return file_path
def binarize_column_using_Pandas_on_CSV_data(
table_path,
transformed_table_path,
column_name,
predicate = "> 0",
new_column_name = None,
keep_original_column = False,
):
import pandas
df = pandas.read_csv(table_path).convert_dtypes()
original_series = df[column_name]
# Dynamically executing the predicate code
# Variable namespace for code execution
namespace = dict(x=original_series)
# I though that there should be no space before `predicate` so that "dot" predicate methods like ".between(min, max)" work.
# However Python allows spaces before dot: `df .isna()`.
# So having a space is not a problem
transform_code = f"""new_series_boolean = x {predicate}"""
# Note: exec() takes no keyword arguments
# exec(__source=transform_code, __globals=namespace)
exec(transform_code, namespace)
new_series_boolean = namespace["new_series_boolean"]
# There are multiple ways to convert boolean column to integer.
# .apply(int) might be faster. https://stackoverflow.com/a/49804868/1497385
# TODO: Do a proper benchmark.
new_series = new_series_boolean.apply(int)
# new_series = new_series_boolean.astype(int)
# new_series = new_series_boolean.replace({False: 0, True: 1})
if new_column_name:
df.insert(loc=0, column=new_column_name, value=new_series)
if not keep_original_column:
df = df.drop(columns=[column_name])
else:
df[column_name] = new_series
df.to_csv(transformed_table_path, index=False)
def _deserialize_bool(s) -> bool:
from distutils.util import strtobool
return strtobool(s) == 1
import argparse
_parser = argparse.ArgumentParser(prog='Binarize column using Pandas on CSV data', description='')
_parser.add_argument("--table", dest="table_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--column-name", dest="column_name", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--predicate", dest="predicate", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--new-column-name", dest="new_column_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--keep-original-column", dest="keep_original_column", type=_deserialize_bool, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--transformed-table", dest="transformed_table_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parsed_args = vars(_parser.parse_args())
_outputs = binarize_column_using_Pandas_on_CSV_data(**_parsed_args)
args:
- --table
- {inputPath: table}
- --column-name
- {inputValue: column_name}
- if:
cond: {isPresent: predicate}
then:
- --predicate
- {inputValue: predicate}
- if:
cond: {isPresent: new_column_name}
then:
- --new-column-name
- {inputValue: new_column_name}
- if:
cond: {isPresent: keep_original_column}
then:
- --keep-original-column
- {inputValue: keep_original_column}
- --transformed-table
- {outputPath: transformed_table}
@@ -1,75 +0,0 @@
name: Fill all missing values using Pandas on CSV data
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml'}
inputs:
- {name: table, type: CSV}
- {name: replacement_value, type: String, default: '0', optional: true}
- {name: column_names, type: JsonArray, optional: true}
outputs:
- {name: transformed_table, type: CSV}
implementation:
container:
image: python:3.9
command:
- sh
- -c
- (PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet --no-warn-script-location
'pandas==1.4.1' || PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet
--no-warn-script-location 'pandas==1.4.1' --user) && "$0" "$@"
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def _make_parent_dirs_and_return_path(file_path: str):
import os
os.makedirs(os.path.dirname(file_path), exist_ok=True)
return file_path
def fill_all_missing_values_using_Pandas_on_CSV_data(
table_path,
transformed_table_path,
replacement_value = "0",
column_names = None,
):
import pandas
df = pandas.read_csv(
table_path,
dtype="string",
)
for column_name in column_names or df.columns:
df[column_name] = df[column_name].fillna(value=replacement_value)
df.to_csv(
transformed_table_path, index=False,
)
import json
import argparse
_parser = argparse.ArgumentParser(prog='Fill all missing values using Pandas on CSV data', description='')
_parser.add_argument("--table", dest="table_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--replacement-value", dest="replacement_value", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--column-names", dest="column_names", type=json.loads, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--transformed-table", dest="transformed_table_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parsed_args = vars(_parser.parse_args())
_outputs = fill_all_missing_values_using_Pandas_on_CSV_data(**_parsed_args)
args:
- --table
- {inputPath: table}
- if:
cond: {isPresent: replacement_value}
then:
- --replacement-value
- {inputValue: replacement_value}
- if:
cond: {isPresent: column_names}
then:
- --column-names
- {inputValue: column_names}
- --transformed-table
- {outputPath: transformed_table}
@@ -1,59 +0,0 @@
name: Select columns using Pandas on CSV data
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/pandas/Select_columns/in_CSV_format/component.yaml'}
inputs:
- {name: table, type: CSV}
- {name: column_names, type: JsonArray}
outputs:
- {name: transformed_table, type: CSV}
implementation:
container:
image: python:3.9
command:
- sh
- -c
- (PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet --no-warn-script-location
'pandas==1.4.2' || PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet
--no-warn-script-location 'pandas==1.4.2' --user) && "$0" "$@"
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def _make_parent_dirs_and_return_path(file_path: str):
import os
os.makedirs(os.path.dirname(file_path), exist_ok=True)
return file_path
def select_columns_using_Pandas_on_CSV_data(
table_path,
transformed_table_path,
column_names,
):
import pandas
df = pandas.read_csv(
table_path,
dtype="string",
)
df = df[column_names]
df.to_csv(transformed_table_path, index=False)
import json
import argparse
_parser = argparse.ArgumentParser(prog='Select columns using Pandas on CSV data', description='')
_parser.add_argument("--table", dest="table_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--column-names", dest="column_names", type=json.loads, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--transformed-table", dest="transformed_table_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parsed_args = vars(_parser.parse_args())
_outputs = select_columns_using_Pandas_on_CSV_data(**_parsed_args)
args:
- --table
- {inputPath: table}
- --column-names
- {inputValue: column_names}
- --transformed-table
- {outputPath: transformed_table}
@@ -1,102 +0,0 @@
name: Create fully connected tensorflow network
description: Creates fully-connected network in Tensorflow SavedModel format
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/tensorflow/Create_fully_connected_network/component.yaml'}
inputs:
- {name: input_size, type: Integer}
- {name: hidden_layer_sizes, type: JsonArray, default: '[]', optional: true}
- {name: output_size, type: Integer, default: '1', optional: true}
- {name: activation_name, type: String, default: relu, optional: true}
- {name: output_activation_name, type: String, optional: true}
- {name: random_seed, type: Integer, default: '0', optional: true}
outputs:
- {name: model, type: TensorflowSavedModel}
implementation:
container:
image: tensorflow/tensorflow:2.7.0
command:
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def _make_parent_dirs_and_return_path(file_path: str):
import os
os.makedirs(os.path.dirname(file_path), exist_ok=True)
return file_path
def create_fully_connected_tensorflow_network(
input_size,
model_path,
hidden_layer_sizes = [],
output_size = 1,
activation_name = "relu",
output_activation_name = None,
random_seed = 0,
):
"""Creates fully-connected network in Tensorflow SavedModel format"""
import tensorflow as tf
tf.random.set_seed(seed=random_seed)
model = tf.keras.models.Sequential()
model.add(tf.keras.Input(shape=(input_size,)))
for layer_size in hidden_layer_sizes:
model.add(tf.keras.layers.Dense(units=layer_size, activation=activation_name))
# The last layer is left without activation
model.add(tf.keras.layers.Dense(units=output_size, activation=output_activation_name))
print(model.summary())
# Using tf.keras.models.save_model instead of tf.saved_model.save to prevent downstream error:
#tf.saved_model.save(model, model_path)
# ValueError: Unable to create a Keras model from this SavedModel.
# This SavedModel was created with `tf.saved_model.save`, and lacks the Keras metadata.
# Please save your Keras model by calling `model.save`or `tf.keras.models.save_model`.
# See https://github.com/keras-team/keras/issues/16451
tf.keras.models.save_model(model, model_path)
import json
import argparse
_parser = argparse.ArgumentParser(prog='Create fully connected tensorflow network', description='Creates fully-connected network in Tensorflow SavedModel format')
_parser.add_argument("--input-size", dest="input_size", type=int, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--hidden-layer-sizes", dest="hidden_layer_sizes", type=json.loads, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--output-size", dest="output_size", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--activation-name", dest="activation_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--output-activation-name", dest="output_activation_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--random-seed", dest="random_seed", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--model", dest="model_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parsed_args = vars(_parser.parse_args())
_outputs = create_fully_connected_tensorflow_network(**_parsed_args)
args:
- --input-size
- {inputValue: input_size}
- if:
cond: {isPresent: hidden_layer_sizes}
then:
- --hidden-layer-sizes
- {inputValue: hidden_layer_sizes}
- if:
cond: {isPresent: output_size}
then:
- --output-size
- {inputValue: output_size}
- if:
cond: {isPresent: activation_name}
then:
- --activation-name
- {inputValue: activation_name}
- if:
cond: {isPresent: output_activation_name}
then:
- --output-activation-name
- {inputValue: output_activation_name}
- if:
cond: {isPresent: random_seed}
then:
- --random-seed
- {inputValue: random_seed}
- --model
- {outputPath: model}
@@ -1,100 +0,0 @@
name: Predict with TensorFlow model on CSV data
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/tensorflow/Predict/on_CSV/component.yaml'}
inputs:
- {name: dataset, type: CSV}
- {name: model, type: TensorflowSavedModel}
- {name: label_column_name, type: String, optional: true}
- {name: batch_size, type: Integer, default: '1000', optional: true}
outputs:
- {name: predictions}
implementation:
container:
image: tensorflow/tensorflow:2.9.1
command:
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def _make_parent_dirs_and_return_path(file_path: str):
import os
os.makedirs(os.path.dirname(file_path), exist_ok=True)
return file_path
def predict_with_TensorFlow_model_on_CSV_data(
dataset_path,
model_path,
predictions_path,
label_column_name = None,
batch_size = 1000,
):
import numpy
import tensorflow as tf
model = tf.saved_model.load(export_dir=model_path)
dataset = tf.data.experimental.make_csv_dataset(
file_pattern=dataset_path,
batch_size=batch_size,
label_name=label_column_name,
header=True,
num_epochs=1,
shuffle=False,
ignore_errors=False,
)
def stack_feature_batches(features_batch):
# Need to stack individual feature columns to create a single feature tensor
# Need to cast all column tensor types to float to prevent errors.
list_of_feature_batches = list(
tf.cast(x=feature_batch, dtype=tf.float32)
for feature_batch in features_batch.values()
)
return tf.stack(list_of_feature_batches, axis=-1)
def transform_features_and_drop_labels(features_batch, labels_batch):
return stack_feature_batches(features_batch)
dataset_map_fn = (
transform_features_and_drop_labels
if label_column_name
else stack_feature_batches
)
dataset = dataset.map(dataset_map_fn)
with open(predictions_path, "w") as predictions_file:
for features_batch in dataset:
predictions_tensor = model(features_batch)
numpy.savetxt(predictions_file, predictions_tensor.numpy())
import argparse
_parser = argparse.ArgumentParser(prog='Predict with TensorFlow model on CSV data', description='')
_parser.add_argument("--dataset", dest="dataset_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--model", dest="model_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--label-column-name", dest="label_column_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--batch-size", dest="batch_size", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--predictions", dest="predictions_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parsed_args = vars(_parser.parse_args())
_outputs = predict_with_TensorFlow_model_on_CSV_data(**_parsed_args)
args:
- --dataset
- {inputPath: dataset}
- --model
- {inputPath: model}
- if:
cond: {isPresent: label_column_name}
then:
- --label-column-name
- {inputValue: label_column_name}
- if:
cond: {isPresent: batch_size}
then:
- --batch-size
- {inputValue: batch_size}
- --predictions
- {outputPath: predictions}
@@ -1,170 +0,0 @@
name: Train model using Keras on CSV
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/tensorflow/Train_model_using_Keras/on_CSV/component.yaml'}
inputs:
- {name: training_data, type: CSV}
- {name: model, type: TensorflowSavedModel}
- {name: label_column_name, type: String}
- {name: loss_function_name, type: String, default: mean_squared_error, optional: true}
- {name: number_of_epochs, type: Integer, default: '1', optional: true}
- {name: learning_rate, type: Float, default: '0.1', optional: true}
- {name: optimizer_name, type: String, default: Adadelta, optional: true}
- {name: optimizer_parameters, type: JsonObject, optional: true}
- {name: batch_size, type: Integer, default: '32', optional: true}
- {name: metric_names, type: JsonArray, optional: true}
- {name: random_seed, type: Integer, default: '0', optional: true}
outputs:
- {name: trained_model, type: TensorflowSavedModel}
implementation:
container:
image: tensorflow/tensorflow:2.8.0
command:
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def _make_parent_dirs_and_return_path(file_path: str):
import os
os.makedirs(os.path.dirname(file_path), exist_ok=True)
return file_path
def train_model_using_Keras_on_CSV(
training_data_path,
model_path,
trained_model_path,
label_column_name,
loss_function_name = "mean_squared_error",
number_of_epochs = 1,
learning_rate = 0.1,
optimizer_name = "Adadelta",
optimizer_parameters = None,
batch_size = 32,
metric_names = None,
random_seed = 0,
):
import tensorflow as tf
tf.random.set_seed(seed=random_seed)
# Loading model using Keras. Model loaded using TensorFlow does not have .fit.
#model = tf.saved_model.load(export_dir=model_path)
keras_model = tf.keras.models.load_model(filepath=model_path)
optimizer_parameters = optimizer_parameters or {}
optimizer_parameters["learning_rate"] = learning_rate
optimizer_config = {
"class_name": optimizer_name,
"config": optimizer_parameters,
}
optimizer = tf.keras.optimizers.get(optimizer_config)
loss = tf.keras.losses.get(loss_function_name)
training_dataset = tf.data.experimental.make_csv_dataset(
file_pattern=training_data_path,
batch_size=batch_size,
label_name=label_column_name,
header=True,
# Need to specify num_epochs=1 otherwise the training becomes infinite
num_epochs=1,
shuffle=True,
shuffle_seed=random_seed,
ignore_errors=True,
)
def stack_feature_batches(features_batch, labels_batch):
# Need to stack individual feature columns to create a single feature tensor
# Need to cast all column tensor types to float to prevent error:
# TypeError: Tensors in list passed to 'values' of 'Pack' Op have types [int32, float32, float32, int32, int32] that don't all match.
list_of_feature_batches = list(tf.cast(x=feature_batch, dtype=tf.float32) for feature_batch in features_batch.values())
return tf.stack(list_of_feature_batches, axis=-1), labels_batch
training_dataset = training_dataset.map(stack_feature_batches)
# Need to compile the model to prevent error:
# ValueError: No gradients provided for any variable: [..., ...].
keras_model.compile(
optimizer=optimizer,
loss=loss,
metrics=metric_names,
)
keras_model.fit(
training_dataset,
epochs=number_of_epochs,
)
# Using tf.keras.models.save_model instead of tf.saved_model.save to prevent downstream error:
#tf.saved_model.save(keras_model, trained_model_path)
# ValueError: Unable to create a Keras model from this SavedModel.
# This SavedModel was created with `tf.saved_model.save`, and lacks the Keras metadata.
# Please save your Keras model by calling `model.save`or `tf.keras.models.save_model`.
# See https://github.com/keras-team/keras/issues/16451
tf.keras.models.save_model(keras_model, trained_model_path)
import json
import argparse
_parser = argparse.ArgumentParser(prog='Train model using Keras on CSV', description='')
_parser.add_argument("--training-data", dest="training_data_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--model", dest="model_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--label-column-name", dest="label_column_name", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--loss-function-name", dest="loss_function_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--number-of-epochs", dest="number_of_epochs", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--learning-rate", dest="learning_rate", type=float, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--optimizer-name", dest="optimizer_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--optimizer-parameters", dest="optimizer_parameters", type=json.loads, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--batch-size", dest="batch_size", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--metric-names", dest="metric_names", type=json.loads, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--random-seed", dest="random_seed", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--trained-model", dest="trained_model_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parsed_args = vars(_parser.parse_args())
_outputs = train_model_using_Keras_on_CSV(**_parsed_args)
args:
- --training-data
- {inputPath: training_data}
- --model
- {inputPath: model}
- --label-column-name
- {inputValue: label_column_name}
- if:
cond: {isPresent: loss_function_name}
then:
- --loss-function-name
- {inputValue: loss_function_name}
- if:
cond: {isPresent: number_of_epochs}
then:
- --number-of-epochs
- {inputValue: number_of_epochs}
- if:
cond: {isPresent: learning_rate}
then:
- --learning-rate
- {inputValue: learning_rate}
- if:
cond: {isPresent: optimizer_name}
then:
- --optimizer-name
- {inputValue: optimizer_name}
- if:
cond: {isPresent: optimizer_parameters}
then:
- --optimizer-parameters
- {inputValue: optimizer_parameters}
- if:
cond: {isPresent: batch_size}
then:
- --batch-size
- {inputValue: batch_size}
- if:
cond: {isPresent: metric_names}
then:
- --metric-names
- {inputValue: metric_names}
- if:
cond: {isPresent: random_seed}
then:
- --random-seed
- {inputValue: random_seed}
- --trained-model
- {outputPath: trained_model}
@@ -1,33 +0,0 @@
# PyTorch Efficient Training Examples
This folder provides PyTorch efficient training examples using ResNet-50 and ImageNet data.
## Requirements
```shell
pip install --upgrade pip
pip install -r requirements.txt
```
## Description
* resnet.py - Train ResNet-50 on single GPU.
* resnet_dp.py - Train ResNet-50 on single node multiple GPUs with `DataParallel` strategy.
* resnet_ddp.py - Train ResNet-50 on single node multiple GPUs with `DistributedDataParallel` strategy.
* resnet_ddp_wds.py - Train ResNet-50 on single node multiple GPUs with `DistributedDataParallel` strategy and `Webdataset`.
* resnet_fsdp.py - Train ResNet-50 on single node multiple GPUs with `FullyShardedDataParallel` strategy.
* resnet_fsdp_wds.py - Train ResNet-50 on single node multiple GPUs with `FullyShardedDataParallel` strategy and `Webdataset`.
* shard_imagenet.py - Shard ImagNet individual files into `tar` files.
## Benchmark
When run the benchmark on Nvidia T4 GPUs using ImageNet validation dataset, you can get the result like:
Strategy | Seconds/Epoch - Local Data | Seconds/Epoch - Cloud Data
---------------------- | -------------------------- | --------------------------
On 1 GPU | 489 | 804 (2x slower)
On 4 GPUs (DP) | 157 | 738 (5x slower)
On 4 GPUs (DDP) | 134 | 432 (3x slower)
On 4 GPUs (DDP + WDS) | 131 | 133 (same performance)
On 4 GPUs (FSDP) | 139 | 353 (3x slower)
On 4 GPUs (FSDP + WDS) | 138 | 135 (same performance)
@@ -1 +0,0 @@
webdataset == 0.2.26
@@ -1,197 +0,0 @@
# Copyright 2022 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the \"License\");
# you may not use this file except in compliance with the License.\n",
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an \"AS IS\" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Train resnet on single GPU."""
import argparse
import time
from PIL import Image
import torch
from torch import nn
import torchmetrics
import torchvision
from torchvision.models import resnet50
class ImageFolder(torchvision.datasets.ImageFolder):
"""Class for loading imagenet."""
def __init__(self, image_list_file, transform=None, target_transform=None):
self.samples = self._make_dataset(image_list_file)
self.loader = self._loader
self.imgs = self.samples
self.targets = [s[1] for s in self.samples]
self.transform = transform
self.target_transform = target_transform
def _make_dataset(self, image_list_file):
items = []
with open(image_list_file, 'r') as f:
for line in f:
item = line.strip().split(' ')
items.append((item[0], int(item[1])))
return items
def _loader(self, image_path):
with open(image_path, 'rb') as f:
img = Image.open(f)
img = img.convert('RGB')
return img
def train(model, device, dataloader, optimizer):
model.train()
for image, target in dataloader:
image, target = image.to(device), target.to(device)
pred = model(image)
# pred.shape (N, C), target.shape (N)
loss = nn.functional.cross_entropy(pred, target)
optimizer.zero_grad()
loss.backward()
optimizer.step()
return loss
def evaluate(model, device, dataloader, metric):
model.eval()
with torch.no_grad():
for image, target in dataloader:
image, target = image.to(device), target.to(device)
pred = model(image)
metric.update(pred, target)
accuracy = metric.compute()
metric.reset()
return accuracy
def run_training(args):
"""Run training and evaluation."""
# Create model.
model = resnet50(weights=None)
model = model.to(args.device)
# Create train dataloader.
train_dataset = ImageFolder(
image_list_file=args.train_data_path,
transform=torchvision.transforms.Compose([
torchvision.transforms.RandomResizedCrop(224),
torchvision.transforms.RandomHorizontalFlip(),
torchvision.transforms.ToTensor(),
torchvision.transforms.Normalize(
mean=[0.485, 0.456, 0.406], std=[0.229, 0.224, 0.225]),
]))
train_dataloader = torch.utils.data.DataLoader(
dataset=train_dataset,
batch_size=args.train_batch_size,
shuffle=True,
num_workers=args.dataloader_num_workers,
pin_memory=True)
print(f'Train dataloader | samples: {len(train_dataloader.dataset)}, '
f'num workers: {train_dataloader.num_workers}, '
f'batch size: {args.train_batch_size}, '
f'batches/epoch: {len(train_dataloader)}')
# Create eval dataloader.
eval_dataset = ImageFolder(
image_list_file=args.eval_data_path,
transform=torchvision.transforms.Compose([
torchvision.transforms.Resize(256),
torchvision.transforms.CenterCrop(224),
torchvision.transforms.ToTensor(),
torchvision.transforms.Normalize(
mean=[0.485, 0.456, 0.406], std=[0.229, 0.224, 0.225]),
]))
eval_dataloader = torch.utils.data.DataLoader(
dataset=eval_dataset,
batch_size=args.eval_batch_size,
shuffle=False,
num_workers=args.dataloader_num_workers,
pin_memory=True,
drop_last=True)
print(f'Eval dataloader | samples: {len(eval_dataloader.dataset)}, '
f'num workers: {eval_dataloader.num_workers}, '
f'batch size: {args.eval_batch_size}, '
f'batches/epoch: {len(eval_dataloader)}')
# Optimizer.
optimizer = torch.optim.SGD(model.parameters(), 0.1)
# Main loop.
metric = torchmetrics.classification.Accuracy(top_k=1).to(args.device)
for epoch in range(1, args.epochs + 1):
print(f'Running epoch {epoch}')
start = time.time()
train(model, args.device, train_dataloader, optimizer)
end = time.time()
print(f'Training finished in {(end - start):>0.3f} seconds')
start = time.time()
evaluate(model, args.device, eval_dataloader, metric)
end = time.time()
print(f'Evaluation finished in {(end - start):>0.3f} seconds')
print('Done')
def create_args():
"""Create main args."""
parser = argparse.ArgumentParser(
formatter_class=argparse.ArgumentDefaultsHelpFormatter)
parser.add_argument(
'--epochs',
default=1,
type=int,
help='number of total epochs to run')
parser.add_argument(
'--dataloader_num_workers',
default=2,
type=int,
help='number of workders for dataloader')
parser.add_argument(
'--train_data_path',
default='',
type=str,
help='path to training data')
parser.add_argument(
'--train_batch_size',
default=32,
type=int,
help='batch size for training')
parser.add_argument(
'--eval_data_path',
default='',
type=str,
help='path to evaluation data')
parser.add_argument(
'--eval_batch_size',
default=32,
type=int,
help='batch size for evaluation')
args = parser.parse_args()
return args
def main():
args = create_args()
args.device = torch.device('cuda:0' if torch.cuda.is_available() else 'cpu')
print('Launch job on 1 GPU')
run_training(args)
if __name__ == '__main__':
main()
@@ -1,234 +0,0 @@
# Copyright 2022 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the \"License\");
# you may not use this file except in compliance with the License.\n",
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an \"AS IS\" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Train resnet on multiple GPUs with DDP."""
import argparse
import os
import time
from PIL import Image
import torch
from torch import nn
import torch.distributed as dist
import torch.multiprocessing as mp
import torchmetrics
import torchvision
from torchvision.models import resnet50
class ImageFolder(torchvision.datasets.ImageFolder):
"""Class for loading imagenet."""
def __init__(self, image_list_file, transform=None, target_transform=None):
self.samples = self._make_dataset(image_list_file)
self.loader = self._loader
self.imgs = self.samples
self.targets = [s[1] for s in self.samples]
self.transform = transform
self.target_transform = target_transform
def _make_dataset(self, image_list_file):
items = []
with open(image_list_file, 'r') as f:
for line in f:
item = line.strip().split(' ')
items.append((item[0], int(item[1])))
return items
def _loader(self, image_path):
with open(image_path, 'rb') as f:
img = Image.open(f)
img = img.convert('RGB')
return img
def train(model, device, dataloader, optimizer):
model.train()
for image, target in dataloader:
image = image.to(device, non_blocking=True)
target = target.to(device, non_blocking=True)
pred = model(image)
# pred.shape (N, C), target.shape (N)
loss = nn.functional.cross_entropy(pred, target)
optimizer.zero_grad()
loss.backward()
optimizer.step()
return loss
def evaluate(model, device, dataloader, metric):
model.eval()
with torch.no_grad():
for image, target in dataloader:
image = image.to(device, non_blocking=True)
target = target.to(device, non_blocking=True)
pred = model(image)
metric.update(pred, target)
accuracy = metric.compute()
metric.reset()
return accuracy
def worker(gpu, args):
"""Run training and evaluation."""
# Init process group.
print(f'Initiating process {gpu}')
dist.init_process_group(
backend='nccl',
init_method='env://',
world_size=args.gpus,
rank=gpu)
# Create model.
model = resnet50(weights=None)
torch.cuda.set_device(gpu)
model.to(args.device)
model = torch.nn.SyncBatchNorm.convert_sync_batchnorm(model)
model = nn.parallel.DistributedDataParallel(model, device_ids=[gpu])
# Create train dataloader.
train_dataset = ImageFolder(
image_list_file=args.train_data_path,
transform=torchvision.transforms.Compose([
torchvision.transforms.RandomResizedCrop(224),
torchvision.transforms.RandomHorizontalFlip(),
torchvision.transforms.ToTensor(),
torchvision.transforms.Normalize(
mean=[0.485, 0.456, 0.406], std=[0.229, 0.224, 0.225]),
]))
train_sampler = torch.utils.data.distributed.DistributedSampler(
train_dataset, num_replicas=args.gpus, rank=gpu)
train_dataloader = torch.utils.data.DataLoader(
dataset=train_dataset,
batch_size=args.train_batch_size,
shuffle=False,
num_workers=args.dataloader_num_workers,
pin_memory=True,
sampler=train_sampler)
if gpu == 0:
print(f'Train dataloader | samples: {len(train_dataloader.dataset)}, '
f'num workers: {train_dataloader.num_workers}, '
f'global batch size: {args.train_batch_size * args.gpus}, '
f'batches/epoch: {len(train_dataloader)}')
# Create eval dataloader.
eval_dataset = ImageFolder(
image_list_file=args.eval_data_path,
transform=torchvision.transforms.Compose([
torchvision.transforms.Resize(256),
torchvision.transforms.CenterCrop(224),
torchvision.transforms.ToTensor(),
torchvision.transforms.Normalize(
mean=[0.485, 0.456, 0.406], std=[0.229, 0.224, 0.225]),
]))
eval_sampler = torch.utils.data.distributed.DistributedSampler(
eval_dataset, num_replicas=args.gpus, rank=gpu)
eval_dataloader = torch.utils.data.DataLoader(
dataset=eval_dataset,
batch_size=args.eval_batch_size,
shuffle=False,
num_workers=args.dataloader_num_workers,
pin_memory=True,
drop_last=True,
sampler=eval_sampler)
if gpu == 0:
print(f'Eval dataloader | samples: {len(eval_dataloader.dataset)}, '
f'num workers: {eval_dataloader.num_workers}, '
f'batch size: {args.eval_batch_size}, '
f'batches/epoch: {len(eval_dataloader)}')
# Optimizer.
optimizer = torch.optim.SGD(model.parameters(), 0.1)
# Main loop.
metric = torchmetrics.classification.Accuracy(top_k=1).to(args.device)
for epoch in range(1, args.epochs + 1):
if gpu == 0:
print(f'Running epoch {epoch}')
train_sampler.set_epoch(epoch)
start = time.time()
train(model, args.device, train_dataloader, optimizer)
end = time.time()
if gpu == 0:
print(f'Training finished in {(end - start):>0.3f} seconds')
start = time.time()
evaluate(model, args.device, eval_dataloader, metric)
end = time.time()
if gpu == 0:
print(f'Evaluation finished in {(end - start):>0.3f} seconds')
if gpu == 0:
print('Done')
def create_args():
"""Create main args."""
parser = argparse.ArgumentParser(
formatter_class=argparse.ArgumentDefaultsHelpFormatter)
parser.add_argument(
'--gpus',
default=4,
type=int,
help='number of gpus to use')
parser.add_argument(
'--epochs',
default=1,
type=int,
help='number of total epochs to run')
parser.add_argument(
'--dataloader_num_workers',
default=2,
type=int,
help='number of workders for dataloader')
parser.add_argument(
'--train_data_path',
default='',
type=str,
help='path to training data')
parser.add_argument(
'--train_batch_size',
default=32,
type=int,
help='batch size for training per gpu')
parser.add_argument(
'--eval_data_path',
default='',
type=str,
help='path to evaluation data')
parser.add_argument(
'--eval_batch_size',
default=32,
type=int,
help='batch size for evaluation per gpu')
args = parser.parse_args()
return args
def main():
args = create_args()
os.environ['MASTER_ADDR'] = 'localhost'
os.environ['MASTER_PORT'] = '8888'
args.device = 'cuda' if torch.cuda.is_available() else 'cpu'
print(f'Launch job on {args.gpus} GPUs with DDP')
mp.spawn(worker, nprocs=args.gpus, args=(args,))
if __name__ == '__main__':
main()
@@ -1,249 +0,0 @@
# Copyright 2022 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the \"License\");
# you may not use this file except in compliance with the License.\n",
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an \"AS IS\" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Train resnet on multiple GPUs with DDP."""
import argparse
import functools
import itertools
import math
import os
import time
import torch
from torch import nn
import torch.distributed as dist
import torch.multiprocessing as mp
import torchmetrics
from torchvision.models import resnet50
from torchvision.transforms import transforms
import webdataset as wds
def wds_split(src, rank, world_size):
"""Shards split function for webdataset."""
# The context of caller of this function is within multiple processes
# (by DDP world_size) and multiple workers (by dataloader_num_workers).
# So we totally have (world_size * num_workers) workers for processing data.
# NOTE: Raw data should be sharded to enough shards to make sure one process
# can handle at least one shard, otherwise the process may hang.
worker_id = 0
num_workers = 1
worker_info = torch.utils.data.get_worker_info()
if worker_info:
worker_id = worker_info.id
num_workers = worker_info.num_workers
for s in itertools.islice(src, rank * num_workers + worker_id, None,
world_size * num_workers):
yield s
def identity(x):
return x
def create_wds_dataloader(rank, args, mode):
"""Create webdataset dataset and dataloader."""
if mode == 'train':
transform = transforms.Compose([
transforms.RandomResizedCrop(224),
transforms.RandomHorizontalFlip(),
transforms.ToTensor(),
transforms.Normalize(
mean=[0.485, 0.456, 0.406], std=[0.229, 0.224, 0.225]),
])
data_path = args.train_data_path
data_size = args.train_data_size
batch_size_local = args.train_batch_size
batch_size_global = args.train_batch_size * args.gpus
# Since webdataset disallows partial batch, we pad the last batch for train.
batches = int(math.ceil(data_size / batch_size_global))
else:
transform = transforms.Compose([
transforms.Resize(256),
transforms.CenterCrop(224),
transforms.ToTensor(),
transforms.Normalize(
mean=[0.485, 0.456, 0.406], std=[0.229, 0.224, 0.225]),
])
data_path = args.eval_data_path
data_size = args.eval_data_size
batch_size_local = args.eval_batch_size
batch_size_global = args.eval_batch_size * args.gpus
# Since webdataset disallows partial batch, we drop the last batch for eval.
batches = int(data_size / batch_size_global)
dataset = wds.DataPipeline(
wds.SimpleShardList(data_path),
functools.partial(wds_split, rank=rank, world_size=args.gpus),
wds.tarfile_to_samples(),
wds.decode('pil'),
wds.to_tuple('jpg;png;jpeg cls'),
wds.map_tuple(transform, identity),
wds.batched(batch_size_local, partial=False),
)
num_workers = args.dataloader_num_workers
dataloader = wds.WebLoader(
dataset=dataset,
batch_size=None,
shuffle=False,
num_workers=num_workers,
persistent_workers=True if num_workers > 0 else False,
pin_memory=True).repeat(nbatches=batches)
print(f'{mode} dataloader | samples: {data_size}, '
f'num_workers: {num_workers}, '
f'local batch size: {batch_size_local}, '
f'global batch size: {batch_size_global}, '
f'batches: {batches}')
return dataloader
def train(model, device, dataloader, optimizer):
model.train()
for image, target in dataloader:
image = image.to(device, non_blocking=True)
target = target.to(device, non_blocking=True)
pred = model(image)
# pred.shape (N, C), target.shape (N)
loss = nn.functional.cross_entropy(pred, target)
optimizer.zero_grad()
loss.backward()
optimizer.step()
return loss
def evaluate(model, device, dataloader, metric):
model.eval()
with torch.no_grad():
for image, target in dataloader:
image = image.to(device, non_blocking=True)
target = target.to(device, non_blocking=True)
pred = model(image)
metric.update(pred, target)
accuracy = metric.compute()
metric.reset()
return accuracy
def worker(gpu, args):
"""Run training and evaluation."""
# Init process group.
print(f'Initiating process {gpu}')
dist.init_process_group(
backend='nccl',
init_method='env://',
world_size=args.gpus,
rank=gpu)
# Create model.
model = resnet50(weights=None)
torch.cuda.set_device(gpu)
model.to(args.device)
model = torch.nn.SyncBatchNorm.convert_sync_batchnorm(model)
model = nn.parallel.DistributedDataParallel(model, device_ids=[gpu])
# Create dataloader.
train_dataloader = create_wds_dataloader(gpu, args, 'train')
eval_dataloader = create_wds_dataloader(gpu, args, 'eval')
# Optimizer.
optimizer = torch.optim.SGD(model.parameters(), 0.1)
# Main loop.
metric = torchmetrics.classification.Accuracy(top_k=1).to(args.device)
for epoch in range(1, args.epochs + 1):
if gpu == 0:
print(f'Running epoch {epoch}')
start = time.time()
train(model, args.device, train_dataloader, optimizer)
end = time.time()
if gpu == 0:
print(f'Training finished in {(end - start):>0.3f} seconds')
start = time.time()
evaluate(model, args.device, eval_dataloader, metric)
end = time.time()
if gpu == 0:
print(f'Evaluation finished in {(end - start):>0.3f} seconds')
if gpu == 0:
print('Done')
def create_args():
"""Create main args."""
parser = argparse.ArgumentParser(
formatter_class=argparse.ArgumentDefaultsHelpFormatter)
parser.add_argument(
'--gpus',
default=4,
type=int,
help='number of gpus to use')
parser.add_argument(
'--epochs',
default=1,
type=int,
help='number of total epochs to run')
parser.add_argument(
'--dataloader_num_workers',
default=2,
type=int,
help='number of workders for dataloader')
parser.add_argument(
'--train_data_path',
default='',
type=str,
help='path to training data')
parser.add_argument(
'--train_batch_size',
default=32,
type=int,
help='batch size for training per gpu')
parser.add_argument(
'--train_data_size',
default=50000,
type=int,
help='data size for training')
parser.add_argument(
'--eval_data_path',
default='',
type=str,
help='path to evaluation data')
parser.add_argument(
'--eval_batch_size',
default=32,
type=int,
help='batch size for evaluation per gpu')
parser.add_argument(
'--eval_data_size',
default=50000,
type=int,
help='data size for evaluation')
args = parser.parse_args()
return args
def main():
args = create_args()
os.environ['MASTER_ADDR'] = 'localhost'
os.environ['MASTER_PORT'] = '8888'
args.device = 'cuda' if torch.cuda.is_available() else 'cpu'
print(f'Launch job on {args.gpus} GPUs with DDP')
mp.spawn(worker, nprocs=args.gpus, args=(args,))
if __name__ == '__main__':
main()
@@ -1,207 +0,0 @@
# Copyright 2022 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the \"License\");
# you may not use this file except in compliance with the License.\n",
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an \"AS IS\" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Train resnet on multiple GPUs with DP."""
import argparse
import time
from PIL import Image
import torch
from torch import nn
import torchmetrics
import torchvision
from torchvision.models import resnet50
class ImageFolder(torchvision.datasets.ImageFolder):
"""Class for loading imagenet."""
def __init__(self, image_list_file, transform=None, target_transform=None):
self.samples = self._make_dataset(image_list_file)
self.loader = self._loader
self.imgs = self.samples
self.targets = [s[1] for s in self.samples]
self.transform = transform
self.target_transform = target_transform
def _make_dataset(self, image_list_file):
items = []
with open(image_list_file, 'r') as f:
for line in f:
item = line.strip().split(' ')
items.append((item[0], int(item[1])))
return items
def _loader(self, image_path):
with open(image_path, 'rb') as f:
img = Image.open(f)
img = img.convert('RGB')
return img
def train(model, device, dataloader, optimizer):
model.train()
for image, target in dataloader:
image, target = image.to(device), target.to(device)
pred = model(image)
# pred.shape (N, C), target.shape (N)
loss = nn.functional.cross_entropy(pred, target)
optimizer.zero_grad()
loss.backward()
optimizer.step()
return loss
def evaluate(model, device, dataloader, metric):
model.eval()
with torch.no_grad():
for image, target in dataloader:
image, target = image.to(device), target.to(device)
pred = model(image)
metric.update(pred, target)
accuracy = metric.compute()
metric.reset()
return accuracy
def run_training(args):
"""Run training and evaluation."""
# Create model.
model = resnet50(weights=None)
model = nn.DataParallel(model)
model = model.to(args.device)
# Create train dataloader.
train_dataset = ImageFolder(
image_list_file=args.train_data_path,
transform=torchvision.transforms.Compose([
torchvision.transforms.RandomResizedCrop(224),
torchvision.transforms.RandomHorizontalFlip(),
torchvision.transforms.ToTensor(),
torchvision.transforms.Normalize(
mean=[0.485, 0.456, 0.406], std=[0.229, 0.224, 0.225]),
]))
train_dataloader = torch.utils.data.DataLoader(
dataset=train_dataset,
batch_size=args.train_batch_size,
shuffle=True,
num_workers=args.dataloader_num_workers,
pin_memory=True)
print(f'Train dataloader | samples: {len(train_dataloader.dataset)}, '
f'num workers: {train_dataloader.num_workers}, '
f'global batch size: {args.train_batch_size}, '
f'batches/epoch: {len(train_dataloader)}')
# Create eval dataloader.
eval_dataset = ImageFolder(
image_list_file=args.eval_data_path,
transform=torchvision.transforms.Compose([
torchvision.transforms.Resize(256),
torchvision.transforms.CenterCrop(224),
torchvision.transforms.ToTensor(),
torchvision.transforms.Normalize(
mean=[0.485, 0.456, 0.406], std=[0.229, 0.224, 0.225]),
]))
eval_dataloader = torch.utils.data.DataLoader(
dataset=eval_dataset,
batch_size=args.eval_batch_size,
shuffle=False,
num_workers=args.dataloader_num_workers,
pin_memory=True,
drop_last=True)
print(f'Eval dataloader | samples: {len(eval_dataloader.dataset)}, '
f'num workers: {eval_dataloader.num_workers}, '
f'global batch size: {args.eval_batch_size}, '
f'batches/epoch: {len(eval_dataloader)}')
# Optimizer.
optimizer = torch.optim.SGD(model.parameters(), 0.1)
# Main loop.
metric = torchmetrics.classification.Accuracy(top_k=1).to(args.device)
for epoch in range(1, args.epochs + 1):
print(f'Running epoch {epoch}')
start = time.time()
train(model, args.device, train_dataloader, optimizer)
end = time.time()
print(f'Training finished in {(end - start):>0.3f} seconds')
start = time.time()
evaluate(model, args.device, eval_dataloader, metric)
end = time.time()
print(f'Evaluation finished in {(end - start):>0.3f} seconds')
print('Done')
def create_args():
"""Create main args."""
parser = argparse.ArgumentParser(
formatter_class=argparse.ArgumentDefaultsHelpFormatter)
parser.add_argument(
'--gpus',
default=4,
type=int,
help='number of gpus to use')
parser.add_argument(
'--epochs',
default=1,
type=int,
help='number of total epochs to run')
parser.add_argument(
'--dataloader_num_workers',
default=2,
type=int,
help='number of workders for dataloader')
parser.add_argument(
'--train_data_path',
default='',
type=str,
help='path to training data')
parser.add_argument(
'--train_batch_size',
default=32,
type=int,
help='batch size for training per gpu')
parser.add_argument(
'--eval_data_path',
default='',
type=str,
help='path to evaluation data')
parser.add_argument(
'--eval_batch_size',
default=32,
type=int,
help='batch size for evaluation per gpu')
args = parser.parse_args()
return args
def main():
args = create_args()
args.device = torch.device('cuda:0' if torch.cuda.is_available() else 'cpu')
args.train_batch_size *= args.gpus
args.eval_batch_size *= args.gpus
args.dataloader_num_workers *= args.gpus
print(f'Launch job on {args.gpus} GPU with nn.DataParallel')
run_training(args)
if __name__ == '__main__':
main()
@@ -1,242 +0,0 @@
# Copyright 2022 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the \"License\");
# you may not use this file except in compliance with the License.\n",
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an \"AS IS\" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Train resnet on multiple GPUs with FSDP."""
import argparse
import functools
import os
import time
from PIL import Image
import torch
from torch import nn
import torch.distributed as dist
from torch.distributed.fsdp import FullyShardedDataParallel as FSDP
from torch.distributed.fsdp.wrap import size_based_auto_wrap_policy
import torch.multiprocessing as mp
import torchmetrics
import torchvision
from torchvision.models import resnet50
class ImageFolder(torchvision.datasets.ImageFolder):
"""Class for loading imagenet."""
def __init__(self, image_list_file, transform=None, target_transform=None):
self.samples = self._make_dataset(image_list_file)
self.loader = self._loader
self.imgs = self.samples
self.targets = [s[1] for s in self.samples]
self.transform = transform
self.target_transform = target_transform
def _make_dataset(self, image_list_file):
items = []
with open(image_list_file, 'r') as f:
for line in f:
item = line.strip().split(' ')
items.append((item[0], int(item[1])))
return items
def _loader(self, image_path):
with open(image_path, 'rb') as f:
img = Image.open(f)
img = img.convert('RGB')
return img
def train(model, device, dataloader, optimizer):
model.train()
for image, target in dataloader:
image = image.to(device, non_blocking=True)
target = target.to(device, non_blocking=True)
pred = model(image)
# pred.shape (N, C), target.shape (N)
loss = nn.functional.cross_entropy(pred, target)
optimizer.zero_grad()
loss.backward()
optimizer.step()
return loss
def evaluate(model, device, dataloader, metric):
model.eval()
with torch.no_grad():
for image, target in dataloader:
image = image.to(device, non_blocking=True)
target = target.to(device, non_blocking=True)
pred = model(image)
metric.update(pred, target)
accuracy = metric.compute()
metric.reset()
return accuracy
def worker(gpu, args):
"""Run training and evaluation."""
# Init process group.
print(f'Initiating process {gpu}')
dist.init_process_group(
backend='nccl',
init_method='env://',
world_size=args.gpus,
rank=gpu)
# Create train dataloader.
train_dataset = ImageFolder(
image_list_file=args.train_data_path,
transform=torchvision.transforms.Compose([
torchvision.transforms.RandomResizedCrop(224),
torchvision.transforms.RandomHorizontalFlip(),
torchvision.transforms.ToTensor(),
torchvision.transforms.Normalize(
mean=[0.485, 0.456, 0.406], std=[0.229, 0.224, 0.225]),
]))
train_sampler = torch.utils.data.distributed.DistributedSampler(
train_dataset, num_replicas=args.gpus, rank=gpu)
train_dataloader = torch.utils.data.DataLoader(
dataset=train_dataset,
batch_size=args.train_batch_size,
shuffle=False,
num_workers=args.dataloader_num_workers,
pin_memory=True,
sampler=train_sampler)
if gpu == 0:
print(f'Train dataloader | samples: {len(train_dataloader.dataset)}, '
f'num workers: {train_dataloader.num_workers}, '
f'global batch size: {args.train_batch_size * args.gpus}, '
f'batches/epoch: {len(train_dataloader)}')
# Create eval dataloader.
eval_dataset = ImageFolder(
image_list_file=args.eval_data_path,
transform=torchvision.transforms.Compose([
torchvision.transforms.Resize(256),
torchvision.transforms.CenterCrop(224),
torchvision.transforms.ToTensor(),
torchvision.transforms.Normalize(
mean=[0.485, 0.456, 0.406], std=[0.229, 0.224, 0.225]),
]))
eval_sampler = torch.utils.data.distributed.DistributedSampler(
eval_dataset, num_replicas=args.gpus, rank=gpu)
eval_dataloader = torch.utils.data.DataLoader(
dataset=eval_dataset,
batch_size=args.eval_batch_size,
shuffle=False,
num_workers=args.dataloader_num_workers,
pin_memory=True,
drop_last=True,
sampler=eval_sampler)
if gpu == 0:
print(f'Eval dataloader | samples: {len(eval_dataloader.dataset)}, '
f'num workers: {eval_dataloader.num_workers}, '
f'batch size: {args.eval_batch_size}, '
f'batches/epoch: {len(eval_dataloader)}')
# Wrap policy.
my_auto_wrap_policy = functools.partial(
size_based_auto_wrap_policy, min_num_params=100)
torch.cuda.set_device(gpu)
# Create model.
model = resnet50(weights=None)
model.to(args.device)
model = FSDP(model, auto_wrap_policy=my_auto_wrap_policy)
# Optimizer.
optimizer = torch.optim.SGD(model.parameters(), 0.1)
# Main loop.
metric = torchmetrics.classification.Accuracy(top_k=1).to(args.device)
for epoch in range(1, args.epochs + 1):
if gpu == 0:
print(f'Running epoch {epoch}')
train_sampler.set_epoch(epoch)
start = time.time()
train(model, args.device, train_dataloader, optimizer)
end = time.time()
if gpu == 0:
print(f'Training finished in {(end - start):>0.3f} seconds')
start = time.time()
evaluate(model, args.device, eval_dataloader, metric)
end = time.time()
if gpu == 0:
print(f'Evaluation finished in {(end - start):>0.3f} seconds')
if gpu == 0:
print('Done')
dist.destroy_process_group()
def create_args():
"""Create main args."""
parser = argparse.ArgumentParser(
formatter_class=argparse.ArgumentDefaultsHelpFormatter)
parser.add_argument(
'--gpus',
default=4,
type=int,
help='number of gpus to use')
parser.add_argument(
'--epochs',
default=2,
type=int,
help='number of total epochs to run')
parser.add_argument(
'--dataloader_num_workers',
default=2,
type=int,
help='number of workders for dataloader')
parser.add_argument(
'--train_data_path',
default='',
type=str,
help='path to training data')
parser.add_argument(
'--train_batch_size',
default=32,
type=int,
help='batch size for training per gpu')
parser.add_argument(
'--eval_data_path',
default='',
type=str,
help='path to evaluation data')
parser.add_argument(
'--eval_batch_size',
default=32,
type=int,
help='batch size for evaluation per gpu')
args = parser.parse_args()
return args
def main():
args = create_args()
os.environ['MASTER_ADDR'] = 'localhost'
os.environ['MASTER_PORT'] = '8888'
args.device = 'cuda' if torch.cuda.is_available() else 'cpu'
print(f'Launch job on {args.gpus} GPUs with FSDP')
mp.spawn(worker, nprocs=args.gpus, args=(args,))
if __name__ == '__main__':
main()
@@ -1,240 +0,0 @@
"""Train resnet on multiple GPUs with DDP."""
import argparse
import functools
import itertools
import math
import os
import time
import torch
from torch import nn
import torch.distributed as dist
from torch.distributed.fsdp import FullyShardedDataParallel as FSDP
from torch.distributed.fsdp.wrap import size_based_auto_wrap_policy
import torch.multiprocessing as mp
import torchmetrics
from torchvision.models import resnet50
from torchvision.transforms import transforms
import webdataset as wds
def wds_split(src, rank, world_size):
"""Shards split function for webdataset."""
# The context of caller of this function is within multiple processes
# (by DDP world_size) and multiple workers (by dataloader_num_workers).
# So we totally have (world_size * num_workers) workers for processing data.
# NOTE: Raw data should be sharded to enough shards to make sure one process
# can handle at least one shard, otherwise the process may hang.
worker_id = 0
num_workers = 1
worker_info = torch.utils.data.get_worker_info()
if worker_info:
worker_id = worker_info.id
num_workers = worker_info.num_workers
for s in itertools.islice(src, rank * num_workers + worker_id, None,
world_size * num_workers):
yield s
def identity(x):
return x
def create_wds_dataloader(rank, args, mode):
"""Create webdataset dataset and dataloader."""
if mode == 'train':
transform = transforms.Compose([
transforms.RandomResizedCrop(224),
transforms.RandomHorizontalFlip(),
transforms.ToTensor(),
transforms.Normalize(
mean=[0.485, 0.456, 0.406], std=[0.229, 0.224, 0.225]),
])
data_path = args.train_data_path
data_size = args.train_data_size
batch_size_local = args.train_batch_size
batch_size_global = args.train_batch_size * args.gpus
# Since webdataset disallows partial batch, we pad the last batch for train.
batches = int(math.ceil(data_size / batch_size_global))
else:
transform = transforms.Compose([
transforms.Resize(256),
transforms.CenterCrop(224),
transforms.ToTensor(),
transforms.Normalize(
mean=[0.485, 0.456, 0.406], std=[0.229, 0.224, 0.225]),
])
data_path = args.eval_data_path
data_size = args.eval_data_size
batch_size_local = args.eval_batch_size
batch_size_global = args.eval_batch_size * args.gpus
# Since webdataset disallows partial batch, we drop the last batch for eval.
batches = int(data_size / batch_size_global)
dataset = wds.DataPipeline(
wds.SimpleShardList(data_path),
functools.partial(wds_split, rank=rank, world_size=args.gpus),
wds.tarfile_to_samples(),
wds.decode('pil'),
wds.to_tuple('jpg;png;jpeg cls'),
wds.map_tuple(transform, identity),
wds.batched(batch_size_local, partial=False),
)
num_workers = args.dataloader_num_workers
dataloader = wds.WebLoader(
dataset=dataset,
batch_size=None,
shuffle=False,
num_workers=num_workers,
persistent_workers=True if num_workers > 0 else False,
pin_memory=True).repeat(nbatches=batches)
print(f'{mode} dataloader | samples: {data_size}, '
f'num_workers: {num_workers}, '
f'local batch size: {batch_size_local}, '
f'global batch size: {batch_size_global}, '
f'batches: {batches}')
return dataloader
def train(model, device, dataloader, optimizer):
model.train()
for image, target in dataloader:
image = image.to(device, non_blocking=True)
target = target.to(device, non_blocking=True)
pred = model(image)
# pred.shape (N, C), target.shape (N)
loss = nn.functional.cross_entropy(pred, target)
optimizer.zero_grad()
loss.backward()
optimizer.step()
return loss
def evaluate(model, device, dataloader, metric):
model.eval()
with torch.no_grad():
for image, target in dataloader:
image = image.to(device, non_blocking=True)
target = target.to(device, non_blocking=True)
pred = model(image)
metric.update(pred, target)
accuracy = metric.compute()
metric.reset()
return accuracy
def worker(gpu, args):
"""Run training and evaluation."""
# Init process group.
print(f'Initiating process {gpu}')
dist.init_process_group(
backend='nccl',
init_method='env://',
world_size=args.gpus,
rank=gpu)
# Create dataloader.
train_dataloader = create_wds_dataloader(gpu, args, 'train')
eval_dataloader = create_wds_dataloader(gpu, args, 'eval')
# Wrap policy.
my_auto_wrap_policy = functools.partial(
size_based_auto_wrap_policy, min_num_params=100)
torch.cuda.set_device(gpu)
# Create model.
model = resnet50(weights=None)
model.to(args.device)
model = FSDP(model, auto_wrap_policy=my_auto_wrap_policy)
# Optimizer.
optimizer = torch.optim.SGD(model.parameters(), 0.1)
# Main loop.
metric = torchmetrics.classification.Accuracy(top_k=1).to(args.device)
for epoch in range(1, args.epochs + 1):
if gpu == 0:
print(f'Running epoch {epoch}')
start = time.time()
train(model, args.device, train_dataloader, optimizer)
end = time.time()
if gpu == 0:
print(f'Training finished in {(end - start):>0.3f} seconds')
start = time.time()
evaluate(model, args.device, eval_dataloader, metric)
end = time.time()
if gpu == 0:
print(f'Evaluation finished in {(end - start):>0.3f} seconds')
if gpu == 0:
print('Done')
def create_args():
"""Create main args."""
parser = argparse.ArgumentParser(
formatter_class=argparse.ArgumentDefaultsHelpFormatter)
parser.add_argument(
'--gpus',
default=4,
type=int,
help='number of gpus to use')
parser.add_argument(
'--epochs',
default=2,
type=int,
help='number of total epochs to run')
parser.add_argument(
'--dataloader_num_workers',
default=2,
type=int,
help='number of workders for dataloader')
parser.add_argument(
'--train_data_path',
default='',
type=str,
help='path to training data')
parser.add_argument(
'--train_batch_size',
default=32,
type=int,
help='batch size for training per gpu')
parser.add_argument(
'--train_data_size',
default=50000,
type=int,
help='data size for training')
parser.add_argument(
'--eval_data_path',
default='',
type=str,
help='path to evaluation data')
parser.add_argument(
'--eval_batch_size',
default=32,
type=int,
help='batch size for evaluation per gpu')
parser.add_argument(
'--eval_data_size',
default=50000,
type=int,
help='data size for evaluation')
args = parser.parse_args()
return args
def main():
args = create_args()
os.environ['MASTER_ADDR'] = 'localhost'
os.environ['MASTER_PORT'] = '8888'
args.device = 'cuda' if torch.cuda.is_available() else 'cpu'
print(f'Launch job on {args.gpus} GPUs with FSDP')
mp.spawn(worker, nprocs=args.gpus, args=(args,))
if __name__ == '__main__':
main()
@@ -1,98 +0,0 @@
# Copyright 2022 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the \"License\");
# you may not use this file except in compliance with the License.\n",
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an \"AS IS\" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
r"""Main function to shard ImageNet dataset.
Example usage:
python3 -u shard_imagenet.py \
--image_list_file=/home/jupyter/data/imagenet/train_list.txt \
--output_pattern=/home/jupyter/data/imagenet/validation-%06d.tar
"""
import argparse
import os
import random
import webdataset as wds # version: 0.2.26
# NOTE: only supports writing to local path,
# need gcsfuse mounting if want to write to gcs bucket.
def write_shards(args):
"""Shard individual data files."""
output_dir = os.path.dirname(args.output_pattern)
if not os.path.isdir(output_dir):
os.makedirs(output_dir)
items = []
# Image list file is a text file, each line is a pair (image_path, label).
with open(args.image_list_file, 'r') as f:
for line in f:
item = line.strip().split(' ')
items.append((item[0], int(item[1])))
# Shuffle items to avoid any large sequences of a single class
# in the dataset.
random.shuffle(items)
def _read_image(image_path):
with open(image_path, 'rb') as f:
return f.read()
with wds.ShardWriter(pattern=args.output_pattern,
maxcount=args.max_images_per_shard,
maxsize=args.max_bytes_per_shard) as sink:
for i, (image_path, target) in enumerate(items):
key = str(i)
image = _read_image(image_path)
sample = {'__key__': key, 'jpg': image, 'cls': target}
sink.write(sample)
if len(items) != sink.total:
raise ValueError('Items read {} != items written {}'.format(
len(items), sink.total))
def create_args():
"""Creates arg parser."""
parser = argparse.ArgumentParser(
formatter_class=argparse.ArgumentDefaultsHelpFormatter)
parser.add_argument(
'--image_list_file',
default='',
type=str,
help='path to image list file')
parser.add_argument(
'--output_pattern',
default='',
type=str,
help='the pattern for output shards, like /path/to/train-%06d.tar')
parser.add_argument(
'--max_images_per_shard',
default=10 * 1024,
type=int,
help='max number of images per shard')
parser.add_argument(
'--max_bytes_per_shard',
default=300 * 1024 * 1024,
type=int,
help='max bytes per shard')
args = parser.parse_args()
return args
def main():
args = create_args()
write_shards(args)
if __name__ == '__main__':
main()
@@ -1,3 +1,3 @@
torch==1.13.1
torch==1.8.1
torchvision==0.9.1
tensorboard==2.5.0
@@ -1,3 +1,3 @@
torch==1.13.1
torch==1.8.1
torchvision==0.9.1
tensorboard==2.5.0
@@ -31,7 +31,17 @@
"source": [
"# Deploying a PyTorch Text Classification Model on [Vertex AI](https://cloud.google.com/vertex-ai)\n",
"\n",
"**Kindly reach out to Vertex AI before you run any scale tests or you have any questions.**\n"
"**This is an Experimental release**, covered by the Pre-GA Offerings Terms of your Google Cloud Platform [Terms of Service](https://cloud.google.com/terms).\n",
"\n",
"Experiments are focused on validating a prototype and are not guaranteed to be released. They are not intended for production use or covered by any SLA, support obligation, or deprecation policy and might be subject to backward-incompatible changes.\n",
"\n",
"**Kindly drop us a note before you run any scale tests.**\n",
"\n",
"**Do not hesitate to contact vertexai-prediction-preview-feedback@google.com if you have any questions or run into any issues.**\n",
"\n",
"The usage of the product is free during the Experimental release period: you will still incur charges for other GCP products usage, such as storage.\n",
"\n",
"The projects need to be added to the allowlist in order to deploy PyTorch models using Vertex AI Prediction pre-built PyTorch images. If you are interested in the feature, please send an email to vertexai-prediction-preview-feedback@google.com to provide your project numbers OR project ids."
]
},
{
-102
View File
@@ -1,102 +0,0 @@
# Administrative Howto notes on CI Notebook Ingestion
This readme covers administrative actions that are performed on an as-needed basis.
## Team: vertex-ai-owners
Members of the vertex-ai-owners (git team) have administrative privileges.
### Viewing members
1. Goto the repo
2. From top-level menu, select: (Settings -> Collaborators and Teams)[https://github.com/GoogleCloudPlatform/vertex-ai-samples/settings/access]
### Adding a new member
If another member needs to be added:
- Have the new member make a request to join the team.
- vertex-ai-owners with the `Maintainer` tag may add the new member.
## Executing CI notebook ingestion checks on a PR
### Killing a stuck PR
If the CI notebook ingestion test is stuck (not terminating), you can kill the process by:
1. Goto the PR
2. Under checks, find the entry: vertex-ai-notebook-execution-test (python-docs-samples-tests) In progress —> Summary
3. Select Details
4. At bottom of details page, select: View more details on Google Cloud Build
5. In Cloud Build history page, select Cancel on the top menu bar.
### Restart a PR test
There are two ways to restart the CI notebook ingestion tests on an open PR.
1. In Cloud Build history page, select Rebuild on the top menu bar.
2. or, in a comment in the PR enter: /gcbrun
## Bypassing CI notebook ingestion checks on a PR
We strongly discourage this, unless there is a compelling reason that would impact the integrity of the quality process.
There are two ways of doing this. In both cases, you do:
1. Goto the repo
2. From top-level menu, select: (Settings -> Branches)[https://github.com/GoogleCloudPlatform/vertex-ai-samples/settings/branches]
3. Under Branch Protection Rules, select the `main` branch.
### Allowing a member to disable requirements for merging
Specific member(s) can be assigned the ability to override requirements and merge a PR, by:
1. Select Edit for the `main` branch in Branch Protection Rules.
2. Find the entry "Allow specified actors to bypass required pull requests".
3. Under this entry, add the member's git LDAP.
4. Select SAVE.
5. The "Squash and Merge" button will now be enabled on all PRs viewed by that member.
### Temporarily disable checks.
You can disable requirement checks temporarily on all PRs.
1. Select Edit for the `main` branch in Branch Protection Rules.
2. Uncheck:
- Require approvals
- Require review from Code Owners
- Require status checks to pass before merging
3. Select SAVE
4. Now all members will see a green "Squash and Merge" on all PRs viewed by that member.
To reverse, recheck the settings you unchecked above.
## Linting
To execute the identical lint image locally, from the CI notebook ingestion checks, do:
1. Goto the corresponding local folder in the repo.
2. Run: `docker run -v ${PWD}:/setup/app gcr.io/python-docs-samples-tests/notebook_linter:latest <your_notebooks>`
## Install dependency issues
Some packages (and combinations) have dependencies that fail on the virgin VM image used for the CI notebook ingestion test.
### TFDV
If the notebook installs and uses tensorflow_data_validation, install as follows:
! pip3 install -q {USER_FLAG} google-cloud-aiplatform \
tensorflow-data-validation \
protobuf==3.20.3
! pip3 install -q {USER_FLAG} cachetools==5.2.0
+3 -36
View File
@@ -7,58 +7,25 @@
/gapic @andrewferlitsch
/gapic/custom/showcase_custom_image_classification_online_explain_example_based_api.ipynb @inardini
/ml_ops @andrewferlitsch
/model_monitoring/* @andrewferlitsch
/model_monitoring/* @mco-gh
/structured_data/rapid_prototyping_* @rafael-carvalho
/managed_notebooks/
/bigquery_ml/ @polong
/sdk/SDK_FBProphet_Forecasting_Online.ipynb @brianchunkang
/pipelines/google_cloud_pipeline_components_TPU_model_train_upload_deploy.ipynb @brianchunkang
/explainable_ai/SDK_Custom_Container_XAI.ipynb @brianchunkang
/matching_engine/sdk_matching_engine_for_indexing.ipynb @ivanmkc
/matching_engine/matching_engine_for_indexing.ipynb @yinghsienwu
/matching_engine/stream_update_for_matching_engine.ipynb @peterping666
/sdk/pytorch_lightning_custom_container_training.ipynb @brianchunkang
/sdk/sdk_pytorch_torchrun_custom_container_training_imagenet.ipynb @brianchunkang
/tensorboard @yfang1
/feature_store @nayaknishant @morgandu
/prediction @googleapis/vertex-prediction-team
/vertex_endpoints/tf_hub_obj_detection/deploy_tfhub_object_detection_on_vertex_endpoints.ipynb @entrpn
/vertex_endpoints/find_ideal_machine_type/find_ideal_machine_type/find_ideal_machine_type.ipynb @entrpn
/vertex_endpoints/nvidia-triton/nvidia-triton-custom-container-prediction.ipynb @RajeshThallam
/vertex_endpoints/optimized_tensorflow_runtime @vlasenkoalexey
/notebooks/community/ml_ops/stage2/get_started_with_visionapi_and_automl.ipynb @mansari
/notebooks/community/neo4j/graph_paysim.ipynb @benofben @laeg
/notebooks/community/ml_ops/stage1/get_started_with_visionapi_and_vertex_datasets.ipynb @mansari
/notebooks/community/pipelines/google_cloud_pipeline_components_bqml_pipeline_demand_forecasting.ipynb @inardini
/notebooks/community/cohere/cohere_embedding_with_matching_engine.ipynb @stewart-co
/notebooks/community/ml_ops/stage2/get_started_vertex_hpt_r_kernel.ipynb @fhirschmann
/notebooks/community/ml_ops/stage2/get_started_vertex_training_r_using_r_kernel.ipynb @fhirschmann
/notebooks/community/ml_ops/stage3/get_started_with_dataflow_flex_template_component.ipynb @wintwoo
/notebooks/community/vertex-ai-samples/notebooks/community/model_registry/vertex_ai_model_registry_bqml_custom_model_versioning.ipynb @inardini
/notebooks/community/vertex-ai-samples/notebooks/community/model_registry/vertex_ai_model_registry_automl_model_versioning.ipynb @inardini
/notebooks/community/vizier/conversions_vertex_vizier_and_open_source_vizier.ipynb @halio-g
/notebooks/community/experiments/vertex_ai_model_experimentation.ipynb @inardini @asobran
/notebooks/community/pipelines/google_cloud_pipeline_components_bqml_pipeline_anomaly_detection.ipynb @inardini
/notebooks/community/pipelines/google_cloud_pipeline_components_cloud_natural_language_pipeline.ipynb @Narwhalprime
/notebooks/community/pipelines/google_cloud_pipeline_components_ready_to_go_text_classification_pipeline.ipynb @Narwhalprime
/notebooks/community/feature_store/get_started_vertex_feature_store.ipynb @junkourata
/notebooks/community/model_garden/model_garden_huggingface_local_inference.ipynb @dstnluong-google
/notebooks/community/model_garden/model_garden_tfvision_image_classification.ipynb @genquan9
/notebooks/community/model_garden/model_garden_tfvision_image_object_detection.ipynb @genquan9
/notebooks/community/model_garden/model_garden_tfvision_image_segmentation.ipynb @genquan9
/notebooks/community/model_garden/model_garden_pytorch_stable_diffusion.ipynb @xiangxu-google
/notebooks/community/model_garden/model_garden_pytorch_stable_diffusion_inpainting.ipynb @xiangxu-google
/notebooks/community/model_garden/model_garden_pytorch_instructpix2pix.ipynb @xiangxu-google
/notebooks/community/model_garden/model_garden_pytorch_controlnet.ipynb @xiangxu-google
/notebooks/community/model_garden/model_garden_pytorch_blip_image_captioning.ipynb @xiangxu-google
/notebooks/community/model_garden/model_garden_pytorch_blip_vqa.ipynb @xiangxu-google
/notebooks/community/model_garden/model_garden_pytorch_vilt_vqa.ipynb @xiangxu-google
/notebooks/community/model_garden/model_garden_pytorch_vit_gpt2_image_captioning.ipynb @xiangxu-google
/notebooks/community/model_garden/model_garden_pytorch_clip.ipynb @xiangxu-google
/notebooks/community/model_garden/model_garden_pytorch_owlvit.ipynb @xiangxu-google
/notebooks/community/model_garden/model_garden_pytorch_layoutml_document_qa.ipynb @xiangxu-google
/notebooks/community/model_garden/model_garden_pytorch_blip2.ipynb @xiangxu-google
/notebooks/community/model_garden/model_garden_pytorch_detectron2.ipynb @lavraicse
/notebooks/community/generative_ai/text_embedding_api_semantic_search_with_scann.ipynb @henrytansetiawan
/notebooks/community/bigquery_ml_inference/bq_ml_with_vision_translation_nlp.ipynb @deaconsmith
/notebooks/community/model_garden/model_garden_keras_stable_diffusion.ipynb @genquan9
/notebooks/community/pipelines/google_cloud_pipeline_components_bqml_pipeline_demand_forecasting.ipynb @inardini
-19
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@@ -1,19 +0,0 @@
[Unstructured data analytics with BigQuery ML and Vertex AI pre-trained models](https://github.com/GoogleCloudPlatform/vertex-ai-samples/blob/main/notebooks/community/bigquery_ml/bq_ml_with_vision_translation_nlp.ipynb)
```
Learn how to analyze unstructured data within BigQuery using BigQuery's inference engine. You will use BigQuery ML to connect to three pretrained Vertex AI APIs - Vision API, Translation API and Natural Language Processing API.
The steps performed include:
- Define pre-trained models for Vision AI, Translation AI and NLP AI in BigQuery ML
- Call the Vision API (`ML.ANNOTATE_IMAGE`) to detect text in images stored in Cloud Storage
You will need to create an object table in BigQuery to do this
- Call the Translation API (`ML.TRANSLATE`) to detect the language of text, and translate non-English movie titles to English
- Call the Natural Language API (`ML.UNDERSTAND_TEXT`) to run sentiment analysis over movie reviews stored in BigQuery
```
&nbsp;&nbsp;&nbsp;Check out the [blog for this notebook](https://cloud.google.com/blog/products/data-analytics/how-simplify-unstructured-data-analytics-using-bigquery-ml-and-vertex-ai).
&nbsp;&nbsp;&nbsp;Learn more about [BigQuery ML inference engine](https://cloud.google.com/bigquery/docs/reference/standard-sql/inference-overview).
File diff suppressed because one or more lines are too long
-3
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# README
These are notebooks [Cohere](https://cohere.ai/) built in collaboration with Google. They demonstrate how to use Cohere's modeling API along with Vertex AI.
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@@ -1,373 +0,0 @@
{
"cells": [
{
"cell_type": "code",
"execution_count": null,
"id": "KSP1duKDeaDR",
"metadata": {
"id": "KSP1duKDeaDR"
},
"outputs": [],
"source": [
"# Copyright 2023 Google LLC\n",
"#\n",
"# Licensed under the Apache License, Version 2.0 (the \"License\");\n",
"# you may not use this file except in compliance with the License.\n",
"# You may obtain a copy of the License at\n",
"#\n",
"# https://www.apache.org/licenses/LICENSE-2.0\n",
"#\n",
"# Unless required by applicable law or agreed to in writing, software\n",
"# distributed under the License is distributed on an \"AS IS\" BASIS,\n",
"# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n",
"# See the License for the specific language governing permissions and\n",
"# limitations under the License."
]
},
{
"cell_type": "markdown",
"id": "67b2c5cc-8fc6-4082-9052-69fa0377d770",
"metadata": {
"id": "67b2c5cc-8fc6-4082-9052-69fa0377d770"
},
"source": [
"# Semantic Search using Embeddings\n",
"\n",
"Semantic search is a type of search that uses the meaning of words and phrases to find relevant results.\n",
"\n",
"In this tutorial, we will demonstrate how to do semantic search with embeddings generated from the news text and using [Google ScaNN: Efficient Vector Similarity Search](https://ai.googleblog.com/2020/07/announcing-scann-efficient-vector.html) to retrieve the most relevant news semantically.\n",
"\n",
"## Pre-requisites:\n",
"- Vertex LLM SDK\n",
"- ScaNN [github](https://github.com/google-research/google-research/tree/master/scann)"
]
},
{
"cell_type": "markdown",
"id": "FyyMdUeAJIVv",
"metadata": {
"id": "FyyMdUeAJIVv"
},
"source": [
"## Install Vertex LLM SDK\n",
"\n",
"DISCLAIMER: Text Embedding API is now in Experimental Preview. This release focuses on validating model prototypes and these models are not guaranteed to be released. Use of Text Embedding API is governed by the Google Cloud Terms of Service, the Pre-GA Offerings Terms of the GCP Service Specific Terms. The Acceptance Use Policy, and the Generative AI Prohibited Use Policy. Vertex Text Embedding API’s features may be unstable, change in backward-incompatible ways, and are not guaranteed to be released. There are no SLAs provided and no technical support obligations. GCP’s Cloud Data Processing Addendum does not apply to Pre-GA Offerings and customers should not use Text Embedding API to process personal data or other data subject to legal or regulatory compliance requirements. See description of launch stage for details.\n",
"\n",
"The information in this documentation is provided to the customer on an “as is” and “with all faults” basis without any warranty of any kind, either express or implied. Google does not warrant or guarantee the correctness, accuracy or reliability of the information in here. In no event will Google or its affiliates or licensors be liable for any damage or harm to customers from customer’s use of these materials."
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "h6KaE3XRJdxc",
"metadata": {
"id": "h6KaE3XRJdxc"
},
"outputs": [],
"source": [
"from google.colab import auth as google_auth\n",
"\n",
"google_auth.authenticate_user()"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "snBUuUamoJPz",
"metadata": {
"id": "snBUuUamoJPz"
},
"outputs": [],
"source": [
"!pip3 install google-cloud-aiplatform>=1.25 \"shapely<2.0.0\""
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "zgVQcE0ewO8W",
"metadata": {
"id": "zgVQcE0ewO8W"
},
"outputs": [],
"source": [
"PROJECT_ID = \"cloud-nl-llm-embedding\" # @param {type:\"string\"}\n",
"LOCATION = \"us-central1\" # @param {type:\"string\"}\n",
"\n",
"import vertexai\n",
"\n",
"vertexai.init(project=PROJECT_ID, location=LOCATION)"
]
},
{
"cell_type": "markdown",
"id": "4xFzXmPbY7FC",
"metadata": {
"id": "4xFzXmPbY7FC"
},
"source": [
"**Attention**: you would need to restart runtime so that the right package is installed."
]
},
{
"cell_type": "markdown",
"id": "xnfG88OPZI18",
"metadata": {
"id": "xnfG88OPZI18"
},
"source": [
"## Import TextEmbeddingModel"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "1e6e1b98-a632-44a2-afb8-fc212018ef4f",
"metadata": {
"id": "1e6e1b98-a632-44a2-afb8-fc212018ef4f"
},
"outputs": [],
"source": [
"from vertexai.preview.language_models import TextEmbeddingModel\n",
"\n",
"model = TextEmbeddingModel.from_pretrained(\"textembedding-gecko@001\")"
]
},
{
"cell_type": "markdown",
"id": "1suA-1HuaGj6",
"metadata": {
"id": "1suA-1HuaGj6"
},
"source": [
"## Install ScaNN Package"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "770255d3-54dd-48c8-bbdd-fbc0be41f085",
"metadata": {
"id": "770255d3-54dd-48c8-bbdd-fbc0be41f085"
},
"outputs": [],
"source": [
"!pip install scann"
]
},
{
"cell_type": "markdown",
"id": "dae340cb-0583-4e7e-a562-6817ee4d7f6d",
"metadata": {
"id": "dae340cb-0583-4e7e-a562-6817ee4d7f6d"
},
"source": [
"## Imports packages"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "412d00f1-08db-4880-8ced-52a9583757b8",
"metadata": {
"id": "412d00f1-08db-4880-8ced-52a9583757b8"
},
"outputs": [],
"source": [
"import json\n",
"import time\n",
"\n",
"import numpy as np\n",
"import pandas as pd\n",
"import scann"
]
},
{
"cell_type": "markdown",
"id": "f50f22f3-ec85-463e-b6fe-5c8e6b80b07b",
"metadata": {
"id": "f50f22f3-ec85-463e-b6fe-5c8e6b80b07b"
},
"source": [
"## Create Embedding Dataset.\n",
"\n",
"The dataset is solely to demonstrate the use of the Text Embedding API with a vector database. It is not intended to be used for any other purpose, such as evaluating models. The dataset is small and does not represent a comprehensive sample of all possible text."
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "2OUg-Qf8iFta",
"metadata": {
"id": "2OUg-Qf8iFta"
},
"outputs": [],
"source": [
"!gsutil cp gs://cloud-samples-data/vertex-ai/dataset-management/datasets/bert_finetuning/wide_and_deep_trainer_container_tests_input.jsonl ."
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "BNPapKXviHlE",
"metadata": {
"id": "BNPapKXviHlE"
},
"outputs": [],
"source": [
"records = []\n",
"with open(\"wide_and_deep_trainer_container_tests_input.jsonl\") as f:\n",
" for line in f:\n",
" record = json.loads(line)\n",
" records.append(record)"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "Z1Y9Bx2miJba",
"metadata": {
"id": "Z1Y9Bx2miJba"
},
"outputs": [],
"source": [
"# Peek at the data.\n",
"df = pd.DataFrame(records)\n",
"df.head(50)"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "1v7zUwoWiPl-",
"metadata": {
"id": "1v7zUwoWiPl-"
},
"outputs": [],
"source": [
"def get_embedding(text):\n",
" get_embedding.counter += 1\n",
" try:\n",
" if get_embedding.counter % 100 == 0:\n",
" time.sleep(3)\n",
" return model.get_embeddings([text])[0].values\n",
" except:\n",
" return []\n",
"\n",
"\n",
"get_embedding.counter = 0\n",
"\n",
"# This may take several minutes to complete.\n",
"df[\"embedding\"] = df[\"textContent\"].apply(lambda x: get_embedding(x))"
]
},
{
"cell_type": "markdown",
"id": "ba4f49b6-65e1-49ea-988b-c4e195219deb",
"metadata": {
"id": "ba4f49b6-65e1-49ea-988b-c4e195219deb"
},
"source": [
"## Create an Index"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "245bc8cd-038b-484a-acb2-3a705d4cc4cf",
"metadata": {
"id": "245bc8cd-038b-484a-acb2-3a705d4cc4cf"
},
"outputs": [],
"source": [
"record_count = len(records)\n",
"dataset = np.empty((record_count, 768))\n",
"for i in range(record_count):\n",
" dataset[i] = df.embedding[i]\n",
"\n",
"normalized_dataset = dataset / np.linalg.norm(dataset, axis=1)[:, np.newaxis]\n",
"# configure ScaNN as a tree - asymmetric hash hybrid with reordering\n",
"# anisotropic quantization as described in the paper; see README\n",
"\n",
"# use scann.scann_ops.build() to instead create a TensorFlow-compatible searcher\n",
"searcher = (\n",
" scann.scann_ops_pybind.builder(normalized_dataset, 10, \"dot_product\")\n",
" .tree(\n",
" num_leaves=record_count,\n",
" num_leaves_to_search=record_count,\n",
" training_sample_size=record_count,\n",
" )\n",
" .score_ah(2, anisotropic_quantization_threshold=0.2)\n",
" .reorder(100)\n",
" .build()\n",
")"
]
},
{
"cell_type": "markdown",
"id": "9f1689eb-c27c-4566-afc7-7fbc55552aad",
"metadata": {
"id": "9f1689eb-c27c-4566-afc7-7fbc55552aad"
},
"source": [
"## Queries the Index"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "494079df-d8f6-4a6a-b26b-0b0477791adc",
"metadata": {
"id": "494079df-d8f6-4a6a-b26b-0b0477791adc"
},
"outputs": [],
"source": [
"def search(query):\n",
" start = time.time()\n",
" query = model.get_embeddings([query])[0].values\n",
" neighbors, distances = searcher.search(query, final_num_neighbors=3)\n",
" end = time.time()\n",
"\n",
" for id, dist in zip(neighbors, distances):\n",
" print(f\"[docid:{id}] [{dist}] -- {df.textContent[int(id)][:125]}...\")\n",
" print(\"Latency (ms):\", 1000 * (end - start))"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "50497681-6112-4147-a13e-afedb72b54f5",
"metadata": {
"id": "50497681-6112-4147-a13e-afedb72b54f5"
},
"outputs": [],
"source": [
"search(\"tell me about shark or animal\")"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "c814f835-3e2a-4366-a334-ccc636f00b83",
"metadata": {
"id": "c814f835-3e2a-4366-a334-ccc636f00b83"
},
"outputs": [],
"source": [
"search(\"tell me about an important moment or event in your life\")"
]
}
],
"metadata": {
"colab": {
"name": "text_embedding_api_semantic_search_with_scann.ipynb",
"toc_visible": true
},
"kernelspec": {
"display_name": "Python 3",
"name": "python3"
}
},
"nbformat": 4,
"nbformat_minor": 0
}
File diff suppressed because it is too large Load Diff
@@ -33,7 +33,7 @@
"\n",
" <td>\n",
" <a href=\"https://console.cloud.google.com/vertex-ai/notebooks/deploy-notebook?download_url=https://github.com/GoogleCloudPlatform/vertex-ai-samples/blob/master/notebooks/community/matching_engine/stream_update_matching_engine.ipynb\">\n",
" Run in Workbench AI Notebooks\n",
" Run in Google Cloud Notebooks\n",
" </a>\n",
" </td>\n",
" <td>\n",
@@ -53,7 +53,7 @@
"source": [
"## Overview\n",
"\n",
"This example demonstrates how to use the Vertex AI Matching Engine Stream Update Service. \n",
"This example demonstrates how to use the GCP matching engine Stream Update Service. \n",
"\n",
"### Dataset\n",
"\n",
@@ -150,7 +150,7 @@
"source": [
"### Installation\n",
"\n",
"Download and install the latest (preview) version of the Vertex AI SDK for Python."
"Download and install the latest (preview) version of the Vertex SDK for Python."
]
},
{
@@ -442,7 +442,7 @@
"id": "8292bcedab58"
},
"source": [
"## Prepare the data\n",
"## Prepare the Data\n",
"\n",
"The GloVe dataset consists of a set of pre-trained embeddings. The embeddings are split into a \"train\" split, and a \"test\" split.\n",
"We will create a vector search index from the \"train\" split, and use the embedding vectors in the \"test\" split as query vectors to test the vector search index.\n",
@@ -525,7 +525,7 @@
" f.write('{\"id\":\"' + str(i) + '\",')\n",
" f.write('\"embedding\":[' + \",\".join(str(x) for x in train[i]) + \"],\")\n",
" f.write(\n",
" '\"restricts\":[{\"namespace\": \"class\", \"allow\": [\"' + str(i) + '\"]}],'\n",
" '\"restricts\":[{\"namespace\": \"class\", \"allow_list\": [\"' + str(i) + '\"]}],'\n",
" )\n",
" f.write('\"crowding_tag\":' + ('\"a\"' if i % 2 == 0 else '\"b\"') + \"}\")\n",
" f.write(\"\\n\")\n",
@@ -854,7 +854,7 @@
"id": "00c606bc97b5"
},
"source": [
"## Create online queries\n",
"## Create Online Queries\n",
"\n",
"After you built your indexes, you may query against the deployed index through the online querying gRPC API (Match service) within the virtual machine instances from the same region (for example 'us-central1' in this tutorial). \n",
"\n",
+1 -1
View File
@@ -14,5 +14,5 @@ The purpose of this set of notebooks and markdown files is to demonstrate Google
4. [Evaluation](stage4)
5. [Deployment](stage5)
6. [Serving](stage6)
7. Monitoring(stage7)
7. Monitoring
8. Continuous Training
-43
View File
@@ -1,43 +0,0 @@
## Before you begin
### Set up your Google Cloud project
**The following steps are required, regardless of your notebook environment.**
1. [Select or create a Google Cloud project](https://console.cloud.google.com/cloud-resource-manager). When you first create an account, you get a $300 free credit towards your compute/storage costs.
1. [Make sure that billing is enabled for your project](https://cloud.google.com/billing/docs/how-to/modify-project).
1. [Enable the Vertex AI, BigQuery, Compute Engine and Cloud Storage APIs](https://console.cloud.google.com/flows/enableapi?apiid=aiplatform.googleapis.com,bigquery,compute_component,storage_component).
1. If you are running this notebook locally, you need to install the [Cloud SDK](https://cloud.google.com/sdk).
1. Enter your project ID in the cell below. Then run the cell to make sure the
Cloud SDK uses the right project for all the commands in this notebook.
**Note**: Jupyter runs lines prefixed with `!` as shell commands, and it interpolates Python variables prefixed with `$` into these commands.
### Set up your local development environment
**If you are using Colab or Vertex AI Workbench Notebooks**, your environment already meets all the requirements to run this notebook. You can skip this step.
**Otherwise**, make sure your environment meets this notebook's requirements. You need the following:
- The Cloud Storage SDK
- Python 3
- virtualenv
- Jupyter notebook running in a virtual environment with Python 3
The Cloud Storage guide to [Setting up a Python development environment](https://cloud.google.com/python/setup) and the [Jupyter installation guide](https://jupyter.org/install) provide detailed instructions for meeting these requirements. The following steps provide a condensed set of instructions:
1. [Install and initialize the SDK](https://cloud.google.com/sdk/docs/).
2. [Install Python 3](https://cloud.google.com/python/setup#installing_python).
3. [Install virtualenv](https://cloud.google.com/python/setup#installing_and_using_virtualenv) and create a virtual environment that uses Python 3. Activate the virtual environment.
4. To install Jupyter, run `pip3 install jupyter` on the command-line in a terminal shell.
5. To launch Jupyter, run `jupyter notebook` on the command-line in a terminal shell.
6. Open this notebook in the Jupyter Notebook Dashboard.
-112
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@@ -1,112 +0,0 @@
import os
import sys
import argparse
import subprocess
import random
import string
parser = argparse.ArgumentParser()
parser.add_argument('--bucket', dest='bucket_required', action='store_true',
default=False, help='Bucket required')
parser.add_argument('--email', dest='email_required', action='store_true',
default=False, help='Email required')
parser.add_argument('--sa', dest='sa_required', action='store_true',
default=False, help='Service account required')
parser.add_argument('--packages', dest='extra_packages',
default='', type=str, help='additional required packages')
args = parser.parse_args()
extra_pkgs = args.extra_packages
# Installation
# The Vertex AI Workbench Notebook product has specific requirements
IS_WORKBENCH_NOTEBOOK = os.getenv("DL_ANACONDA_HOME")
IS_USER_MANAGED_WORKBENCH_NOTEBOOK = os.path.exists(
"/opt/deeplearning/metadata/env_version"
)
IS_COLAB = "google.colab" in sys.modules
# Vertex AI Notebook requires dependencies to be installed with '--user'
USER_FLAG = ""
if IS_WORKBENCH_NOTEBOOK:
USER_FLAG = "--user"
# not used
'''
print("Installing packages")
os.system(f"pip3 install --upgrade --quiet {USER_FLAG} google-cloud-aiplatform {args.extra_packages}")
print("Done installation")
'''
# Authenticate
if IS_COLAB:
from google.colab import auth as google_auth
google_auth.authenticate_user()
# project ID
if IS_WORKBENCH_NOTEBOOK:
shell_output = subprocess.check_output("gcloud config list --format 'value(core.project)' 2>/dev/null", shell=True)
PROJECT_ID = shell_output[0:-1].decode('utf-8')
print("PROJECT ID: ", PROJECT_ID)
else:
PROJECT_ID = input("Enter PROJECT_ID: ")
os.system(f"gcloud config set project {PROJECT_ID}")
# email
if args.email_required:
shell_output = subprocess.check_output("gcloud config list --format 'value(core.account)' 2>/dev/null", shell=True)
EMAIL_ADDR = shell_output[0:-1].decode('utf-8')
if EMAIL_ADDR == '':
EMAIL_ADDR = input("Enter Email Address: ")
print("EMAIL_ADDR: ", EMAIL_ADDR)
# region
shell_output = subprocess.check_output("gcloud config list --format 'value(ai.region)'", shell=True)
REGION = shell_output[0:-1].decode('utf-8')
if REGION == '':
REGION = input("Enter REGION: ")
print("REGION: ", REGION)
# multi-region
MULTI_REGION = REGION.split('-')[0]
# UUID
# Generate a uuid of a specifed length(default=8)
def generate_uuid(length: int = 8) -> str:
return "".join(random.choices(string.ascii_lowercase + string.digits, k=length))
UUID = generate_uuid()
print("UUID", UUID)
# Bucket
if args.bucket_required:
BUCKET_NAME = PROJECT_ID + "aip-" + UUID
BUCKET_URI = f"gs://{BUCKET_NAME}"
os.system(f"gsutil mb -l {REGION} {BUCKET_URI}")
print("BUCKET_URI", BUCKET_URI)
# Project Number
if args.sa_required:
if IS_WORKBENCH_NOTEBOOK:
shell_output = subprocess.check_output("gcloud auth list 2>/dev/null", shell=True)
SERVICE_ACCOUNT = shell_output[:-1].decode('utf-8').split('\n')[2].strip()
PROJECT_NUMBER = SERVICE_ACCOUNT.split('-')[0]
else:
shell_output = subprocess.check_output(f"gcloud projects describe {PROJECT_ID}", shell=True)
try:
PROJECT_NUMBER = shell_output[:-1].decode('utf-8').split('\n')[7].split(':')[-1].strip().replace("'", "")
SERVICE_ACCOUNT = f"{PROJECT_NUMBER}-compute@developer.gserviceaccount.com"
except:
PROJECT_NUMBER = input("Enter project number: ")
SERVICE_ACCOUNT = f"{PROJECT_NUMBER}-compute@developer.gserviceaccount.com"
print("SERVICE_ACCOUNT", SERVICE_ACCOUNT)
print("PROJECT_NUMBER", PROJECT_NUMBER)

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