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1128 changed files with 57387 additions and 524892 deletions
@@ -1,2 +1 @@
ratemate
google-cloud-aiplatform
+31 -66
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@@ -1,80 +1,45 @@
from typing import List
from ratemate import RateLimit
import argparse
parser = argparse.ArgumentParser()
parser.add_argument("--dry_run",
type=bool,
default=False)
args = parser.parse_args()
from resource_cleanup_manager import (
DatasetResourceCleanupManager,
ModelResourceCleanupManager,
EndpointResourceCleanupManager,
ResourceCleanupManager,
MatchingEngineIndexEndpointResourceCleanupManager,
MatchingEngineIndexResourceCleanupManager,
FeatureStoreLegacyCleanupManager,
FeatureStoreCleanupManager,
PipelineJobCleanupManager,
TrainingJobCleanupManager,
HyperparameterTuningCleanupManager,
BatchPredictionJobCleanupManager,
ExperimentCleanupManager,
BucketCleanupManager,
ArtifactRegistryCleanupManager
ResourceCleanupManager,
DatasetResourceCleanupManager,
EndpointResourceCleanupManager,
ModelResourceCleanupManager,
)
rate_limit = RateLimit(max_count=25, per=60, greedy=False)
def run_cleanup_managers(managers: List[ResourceCleanupManager], is_dry_run: bool):
for manager in managers:
type_name = manager.type_name
for manager in managers:
type_name = manager.type_name
print(f"Fetching {type_name}'s...")
resources = manager.list()
try:
print(f"Found {len(resources)} {type_name}'s")
except Exception as e:
print(f"{type_name} {e}")
for resource in resources:
try:
if not manager.is_deletable(resource):
continue
if is_dry_run:
resource_name = manager.resource_name(resource)
print(f"Will delete '{type_name}': {resource_name}")
else:
rate_limit.wait() # wait before deleting
manager.delete(resource)
except Exception as exception:
print(exception)
print(f"Fetching {type_name}'s...")
resources = manager.list()
print(f"Found {len(resources)} {type_name}'s")
for resource in resources:
if not manager.is_deletable(resource):
continue
print("")
if is_dry_run:
resource_name = manager.resource_name(resource)
print(f"Will delete '{type_name}': {resource_name}")
else:
try:
manager.delete(resource)
except Exception as exception:
print(exception)
print("")
if args.dry_run:
print("Starting cleanup in dry run mode...")
is_dry_run = False
if is_dry_run:
print("Starting cleanup in dry run mode...")
# List of all cleanup managers
managers: List[ResourceCleanupManager] = [
DatasetResourceCleanupManager(),
EndpointResourceCleanupManager(),
ModelResourceCleanupManager(), # ModelResourceCleanupManager must follow EndpointResourceCleanupManager due to deployed models blocking model deletion.
MatchingEngineIndexEndpointResourceCleanupManager(),
MatchingEngineIndexResourceCleanupManager(),
FeatureStoreLegacyCleanupManager(),
FeatureStoreCleanupManager(),
PipelineJobCleanupManager(),
TrainingJobCleanupManager(),
HyperparameterTuningCleanupManager(),
BatchPredictionJobCleanupManager(),
ExperimentCleanupManager(), # Experiment missing _resource_noun
BucketCleanupManager(),
ArtifactRegistryCleanupManager()
managers = [
DatasetResourceCleanupManager(),
EndpointResourceCleanupManager(),
ModelResourceCleanupManager(),
]
run_cleanup_managers(managers=managers, is_dry_run=args.dry_run)
run_cleanup_managers(managers=managers, is_dry_run=is_dry_run)
@@ -1,25 +1,8 @@
'''
READ FIRST BEFORE MAKING CHANGES
- Create a convention for resources created from vertex-ai-samples GH. We already have one IIRC
- Only delete those objects as part of our clean-up script.
- Don't run any tests on python-docs-samples-tests project, especially ones that affect resources created outside of our purview
- Add --dry-run option to the clean-up script. This option will just output the list of resources the script will delete instead of actually deleting the resources.
- Have a larger conversation in DEE before touching any resources that were not created as part of vertex-ai-samples
'''
import os
import abc
from typing import Any, Type
from google.cloud import aiplatform
from google.cloud.aiplatform import base
from google.cloud.aiplatform_v1beta1 import (FeatureOnlineStoreAdminServiceClient,
FeatureOnlineStore)
from google.cloud import storage
from typing import Any
from proto.datetime_helpers import DatetimeWithNanoseconds
PROJECT_ID = "python-docs-samples-tests"
REGION = "us-central1"
API_ENDPOINT = f"{REGION}-aiplatform.googleapis.com"
from google.cloud.aiplatform import base
# If a resource was updated within this number of seconds, do not delete.
RESOURCE_UPDATE_BUFFER_IN_SECONDS = 60 * 60 * 8
@@ -57,7 +40,7 @@ class ResourceCleanupManager(abc.ABC):
# Check that it wasn't created too recently, to prevent race conditions
if time_difference <= RESOURCE_UPDATE_BUFFER_IN_SECONDS:
print(
f"Skipping '{resource}' due to update_time being '{time_difference}', which is less than '{RESOURCE_UPDATE_BUFFER_IN_SECONDS}'."
f"Skipping '{resource}' due update_time being '{time_difference}', which is less than '{RESOURCE_UPDATE_BUFFER_IN_SECONDS}'."
)
return False
@@ -67,7 +50,7 @@ class ResourceCleanupManager(abc.ABC):
class VertexAIResourceCleanupManager(ResourceCleanupManager):
@property
@abc.abstractmethod
def vertex_ai_resource(self) -> Type[base.VertexAiResourceNounWithFutureManager]:
def vertex_ai_resource(self) -> base.VertexAiResourceNounWithFutureManager:
pass
@property
@@ -77,15 +60,13 @@ class VertexAIResourceCleanupManager(ResourceCleanupManager):
def list(self) -> Any:
return self.vertex_ai_resource.list()
def resource_name(
self, resource: Type[base.VertexAiResourceNounWithFutureManager]
) -> str:
def resource_name(self, resource: Any) -> str:
return resource.display_name
def delete(self, resource):
resource.delete()
def get_seconds_since_modification(self, resource: Any) -> float:
def get_seconds_since_modification(self, resource: Any) -> bool:
update_time = resource.update_time
current_time = DatetimeWithNanoseconds.now(tz=update_time.tzinfo)
return (current_time - update_time).total_seconds()
@@ -93,213 +74,14 @@ class VertexAIResourceCleanupManager(ResourceCleanupManager):
class DatasetResourceCleanupManager(VertexAIResourceCleanupManager):
vertex_ai_resource = aiplatform.datasets._Dataset
dataset_types = [
aiplatform.ImageDataset,
aiplatform.TabularDataset,
aiplatform.TextDataset,
aiplatform.TimeSeriesDataset,
aiplatform.VideoDataset,
]
def list(self) -> Any:
return [
dataset
for dataset_type in self.dataset_types
for dataset in dataset_type.list()
]
class EndpointResourceCleanupManager(VertexAIResourceCleanupManager):
vertex_ai_resource = aiplatform.Endpoint
def delete(self, resource):
for deployed_model_id in [
models.id for models in resource._gca_resource.deployed_models
]:
resource._undeploy(deployed_model_id=deployed_model_id)
resource.delete(force=True)
class ModelResourceCleanupManager(VertexAIResourceCleanupManager):
vertex_ai_resource = aiplatform.Model
class MatchingEngineIndexResourceCleanupManager(VertexAIResourceCleanupManager):
vertex_ai_resource = aiplatform.MatchingEngineIndex
class MatchingEngineIndexEndpointResourceCleanupManager(VertexAIResourceCleanupManager):
vertex_ai_resource = aiplatform.MatchingEngineIndexEndpoint
def delete(self, resource):
resource.undeploy_all()
resource.delete(force=True)
class FeatureStoreLegacyCleanupManager(VertexAIResourceCleanupManager):
# TODO: only deleting legacy
# not deleting ingestions jobs
# ingest_from_xxx methods do not return a job ID, there is no list command, aka no python way to delete
# not deleting batch serving jobs
# batch_serve_to_xxx methods do not return a job ID, there is no list command, aka no python way to delete
vertex_ai_resource = aiplatform.Featurestore
def resource_name(self, resource: Any) -> str:
return resource.name
def delete(self, resource):
resource.delete(force=True)
class FeatureStoreCleanupManager(VertexAIResourceCleanupManager):
# for FS 2.0
# TODO: use _v1beta1, and gapic clients
# delete features, feature groups, feature views, feature online stores
vertex_ai_resource = FeatureOnlineStore
admin_client = FeatureOnlineStoreAdminServiceClient(
client_options={"api_endpoint": API_ENDPOINT}
)
def resource_name(self, resource: Any) -> str:
return resource.name
def type_name(self) -> str:
return "FeatureOnlineStore"
def list(self) -> Any:
try:
return self.admin_client.list_feature_online_stores(parent=f"projects/{PROJECT_ID}/locations/{REGION}")
except Exception as e:
print(e)
return []
def delete(self, resource):
try:
self.admin_client.delete_feature_online_store(name=resource.name, force=True)
except Exception as e:
print(e)
class PipelineJobCleanupManager(VertexAIResourceCleanupManager):
vertex_ai_resource = aiplatform.PipelineJob
class TrainingJobCleanupManager(VertexAIResourceCleanupManager):
vertex_ai_resource = aiplatform.training_jobs._CustomTrainingJob
job_types = [
aiplatform.AutoMLImageTrainingJob,
aiplatform.AutoMLTextTrainingJob,
aiplatform.AutoMLTabularTrainingJob,
aiplatform.AutoMLVideoTrainingJob,
aiplatform.AutoMLForecastingTrainingJob,
aiplatform.CustomJob,
aiplatform.CustomTrainingJob,
aiplatform.CustomContainerTrainingJob,
aiplatform.CustomPythonPackageTrainingJob
]
def list(self) -> Any:
return [
job
for job_type in self.job_types
for job in job_type.list()
]
class HyperparameterTuningCleanupManager(VertexAIResourceCleanupManager):
vertex_ai_resource = aiplatform.HyperparameterTuningJob
class BatchPredictionJobCleanupManager(VertexAIResourceCleanupManager):
vertex_ai_resource = aiplatform.BatchPredictionJob
class ExperimentCleanupManager(VertexAIResourceCleanupManager):
vertex_ai_resource = aiplatform.Experiment
@property
def type_name(self) -> str:
return "Experiment"
def resource_name(self, resource: Any) -> str:
return resource.name
def get_seconds_since_modification(self, resource: Any) -> float:
update_time = resource._metadata_context.update_time
current_time = DatetimeWithNanoseconds.now()
return float(current_time.timestamp() - update_time.timestamp())
class BucketCleanupManager(ResourceCleanupManager):
vertex_ai_resource = storage.bucket.Bucket
def list(self) -> Any:
storage_client = storage.Client()
return list(storage_client.list_buckets())
def delete(self, resource):
try:
resource.delete(force=True)
except Exception as e:
print(e)
@property
def type_name(self) -> str:
return "Bucket"
def get_seconds_since_modification(self, resource: Any) -> float:
# Bucket has no last_update property, only time created
created_time = resource.time_created
current_time = DatetimeWithNanoseconds.now()
return float(current_time.timestamp() - created_time.timestamp())
def resource_name(self, resource: Any) -> str:
return resource.name
def is_deletable(self, resource: Any) -> bool:
time_difference = self.get_seconds_since_modification(resource)
if not self.resource_name(resource).startswith('your-bucket-name'):
print(f"Skipping '{resource}' not a Vertex AI notebook bucket")
return False
# Check that it wasn't created too recently, to prevent race conditions
if time_difference <= RESOURCE_UPDATE_BUFFER_IN_SECONDS:
print(
f"Skipping '{resource}' due to update_time being '{time_difference}', which is less than '{RESOURCE_UPDATE_BUFFER_IN_SECONDS}'."
)
return False
return True
class ArtifactRegistryCleanupManager(ResourceCleanupManager):
vertex_ai_resource = "Artifact Registry"
def list(self) -> Any:
import subprocess
result = subprocess.run(["gcloud artifacts repositories list --location=us-central1"],
shell=True, capture_output=True, text=True)
ret = []
lines = result.stdout.split('\n')[2:]
for line in lines:
repo = line.split(' ')[0]
if repo.startswith("my-docker-repo"):
ret.append(repo)
return ret
def delete(self, resource):
os.system(f"! gcloud artifacts repositories delete {resource} --location=us-central1")
@property
def type_name(self) -> str:
return "ArtifactRepository"
def resource_name(self, resource: Any) -> str:
return resource
# delete repository regardless of age
def get_seconds_since_modification(self, resource: Any) -> float:
return RESOURCE_UPDATE_BUFFER_IN_SECONDS + 1
def is_deleteable(self, resource: Any) -> bool:
return True
+11 -123
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@@ -17,9 +17,6 @@
import argparse
import pathlib
import os
import csv
import execute_changed_notebooks_helper
@@ -38,22 +35,9 @@ parser = argparse.ArgumentParser(description="Run changed notebooks.")
parser.add_argument(
"--test_paths_file",
type=pathlib.Path,
help="The path to the file that has newline-delimited folders of notebooks that should be tested.",
help="The path to the file that has newline-limited folders of notebooks that should be tested.",
required=True,
)
parser.add_argument(
"--test_percent",
type=int,
help="The percent of notebooks to be tested (between 1 and 100).",
required=False,
default=100,
)
parser.add_argument(
"--build_id",
type=str,
help="The build id (which may be a Cloud Build job specific or user explicit.",
required=True
)
parser.add_argument(
"--base_branch",
help="The base git branch to diff against to find changed files.",
@@ -77,18 +61,6 @@ parser.add_argument(
help="The GCP region. This is used to inject a variable value into the notebook before running.",
required=True,
)
parser.add_argument(
"--variable_service_account",
type=str,
help="A service account. This is used to inject a variable value into the notebook before running. This is not the account that will run the notebook.",
required=True,
)
parser.add_argument(
"--variable_vpc_network",
type=str,
help="The full VPC network name. See https://cloud.google.com/compute/docs/networks-and-firewalls#networks. Format is projects/{project}/global/networks/{network}, where {project} is a project number, as in '12345', and {network} is network name. See <https://cloud.google.com/compute/docs/reference/rest/v1/networks/insert> for details. This is used to inject a variable value into the notebook before running.",
required=False,
)
parser.add_argument(
"--staging_bucket",
type=str,
@@ -101,13 +73,6 @@ parser.add_argument(
help="The GCP directory for storing executed notebooks.",
required=True,
)
parser.add_argument(
"--timeout",
type=int,
help="Timeout in seconds",
default=86400,
required=False,
)
parser.add_argument(
"--private_pool_id",
type=str,
@@ -122,98 +87,21 @@ parser.add_argument(
default=True,
help="Should run notebooks in parallel.",
)
parser.add_argument(
"--concurrent_notebooks",
type=int,
help="Maximum number of parallel notebook executions per minute",
default=10,
required=False,
)
parser.add_argument(
"--run_first_file",
type=pathlib.Path,
help="The path to the file that has newline-delimited of notebooks to run in the first batch",
default=None,
required=False,
)
parser.add_argument(
"--aiplatform_whl",
type=str,
help="The GCS path to a whl version google-cloud-aiplatform",
default=None,
required=False,
)
parser.add_argument(
"--dry_run",
type=str2bool,
default=False,
help="Dry run for testing - no execution",
)
args = parser.parse_args()
changed_notebooks = execute_changed_notebooks_helper.get_changed_notebooks(
notebooks = execute_changed_notebooks_helper.get_changed_notebooks(
test_paths_file=args.test_paths_file,
base_branch=args.base_branch,
)
results_bucket = f"{args.artifacts_bucket}"
# artifacts_bucket may get set by trigger to a full gs:// folder path
if results_bucket.startswith("gs://"):
results_bucket = results_bucket[5:]
results_bucket = results_bucket.split('/')[0]
results_file = f"build_results/{args.build_id}.json"
if args.test_percent == 100:
notebooks = changed_notebooks
accumulative_results = {}
else:
accumulative_results = execute_changed_notebooks_helper.load_results(results_bucket, results_file)
notebooks = [changed_notebook for changed_notebook in changed_notebooks if execute_changed_notebooks_helper.select_notebook(changed_notebook, accumulative_results, args.test_percent)]
# cap the number of notebooks to the specified percentage
max_notebooks = int((len(changed_notebooks) * (args.test_percent/100)))
if (len(notebooks) > max_notebooks):
notebooks = notebooks[:max_notebooks]
run_first = []
if args.run_first_file:
if not os.path.isfile(args.run_first_file):
print("Error: file does not exist", args.run_first_file)
else:
with open(args.run_first_file, 'r') as csvfile:
reader = csv.reader(csvfile)
for row in reader:
notebook = row[0]
run_first.append(notebook)
for notebook in run_first:
if notebook in notebooks:
# remove from existing list
notebooks.remove(notebook)
# add back to the front of the list
notebooks.insert(0, notebook)
print(f"Run first: {notebook}")
if args.dry_run:
print("Dry run ...\n")
for notebook in notebooks:
print(f"Would execute: {notebook}")
else:
execute_changed_notebooks_helper.process_and_execute_notebooks(
notebooks=notebooks,
container_uri=args.container_uri,
staging_bucket=args.staging_bucket,
artifacts_bucket=args.artifacts_bucket,
results_file=results_file,
should_parallelize=args.should_parallelize,
timeout=args.timeout,
variable_project_id=args.variable_project_id,
variable_region=args.variable_region,
variable_service_account=args.variable_service_account,
variable_vpc_network=args.variable_vpc_network,
private_pool_id=args.private_pool_id,
concurrent_notebooks=args.concurrent_notebooks,
aiplatform_whl=args.aiplatform_whl
execute_changed_notebooks_helper.process_and_execute_notebooks(
notebooks=notebooks,
container_uri=args.container_uri,
staging_bucket=args.staging_bucket,
artifacts_bucket=args.artifacts_bucket,
variable_project_id=args.variable_project_id,
variable_region=args.variable_region,
private_pool_id=args.private_pool_id if not "default" else None,
should_parallelize=args.should_parallelize,
)
+61 -392
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@@ -17,37 +17,18 @@ import concurrent
import dataclasses
import datetime
import functools
import json
import git
import operator
import os
import io
import json
import pathlib
import nbformat
import re
import subprocess
import random
from google.cloud import storage
import utils
from typing import List, Optional, Dict, Any
from utils import util
import execute_notebook_helper
import execute_notebook_remote
import nbformat
from google.cloud.devtools.cloudbuild_v1.types import BuildOperationMetadata
from typing import List, Optional
from tabulate import tabulate
from utils import NotebookProcessors, util
import operator
# A buffer so that workers finish before the orchestrating job
WORKER_TIMEOUT_BUFFER_IN_SECONDS: int = 60 * 60
PYTHON_VERSION = "3.9" # Set default python version
# rolling time window for accumulating build results for selecting notebooks
MAX_RESULTS_AGE_SECONDS: int = (60 * 60) * 24 * 60 # 60 days
# maximum time since last run to force a run on the current build
MAX_AGE_BEFORE_FORCE_RUN: int = (60 * 60) * 24 * 30
import execute_notebook_remote
from utils import util, NotebookProcessors
from google.cloud.devtools.cloudbuild_v1.types import BuildOperationMetadata
def format_timedelta(delta: datetime.timedelta) -> str:
@@ -74,121 +55,18 @@ def format_timedelta(delta: datetime.timedelta) -> str:
@dataclasses.dataclass
class NotebookExecutionResult:
name: str
path: str
duration: datetime.timedelta
start_time: datetime.datetime
is_pass: bool
log_url: str
output_uri: str
build_id: str
logs_bucket: str
error_message: Optional[str]
@property
def output_uri_web(self) -> Optional[str]:
if self.output_uri.startswith("gs://"):
return f"https://storage.googleapis.com/{self.output_uri[5:]}"
else:
return None
def load_results(results_bucket: str,
results_file: str) -> Dict[str, Any]:
'''
Load accumulated notebook test results
'''
print("Loading existing accumulative results ...")
accumulative_results = {}
try:
client = storage.Client()
bucket = client.bucket(results_bucket)
build_results_dir = os.path.dirname(results_file)
blobs = client.list_blobs(results_bucket, prefix=build_results_dir)
for blob in blobs:
time_created = blob.time_created.replace(tzinfo=None)
if (datetime.datetime.now().replace(tzinfo=None) - time_created).total_seconds() > MAX_RESULTS_AGE_SECONDS:
continue
content = util.download_blob_into_memory(results_bucket, blob.name, download_as_text=True)
try:
build_results = json.loads(content)
except:
continue # skip corrupted build results files
for notebook in build_results:
if notebook in accumulative_results:
accumulative_results[notebook]['passed'] += build_results[notebook]['passed']
accumulative_results[notebook]['failed'] += build_results[notebook]['failed']
if accumulative_results[notebook]['last_time_ran'] < time_created:
accumulative_results[notebook]['last_time_ran'] = time_created
else:
accumulative_results[notebook] = build_results[notebook]
accumulative_results[notebook]['failed_on_latest_run'] = build_results[notebook]['failed']
accumulative_results[notebook]['last_time_ran'] = time_created
print(accumulative_results)
except Exception as e:
print(e)
# If there are no accumulative results, an empty dict is returned
return accumulative_results
def select_notebook(changed_notebook: str,
accumulative_results: Dict[str, Any],
test_percent: int) -> bool:
'''
Algorithm to randomly select a notebook, but weight the propbability of selected based on past failures
'''
if changed_notebook in accumulative_results:
pass_count = accumulative_results[changed_notebook]['passed']
fail_count = accumulative_results[changed_notebook]['failed']
failed_on_latest_run = accumulative_results[changed_notebook]['failed_on_latest_run']
last_time_ran = accumulative_results[changed_notebook]['last_time_ran']
else:
pass_count = 1
fail_count = 0
failed_on_latest_run = 0
last_time_ran = datetime.datetime.now().replace(tzinfo=None)
# If notebook has not been ran in a long time, force running it
if (datetime.datetime.now().replace(tzinfo=None) - last_time_ran).total_seconds() > MAX_AGE_BEFORE_FORCE_RUN:
should_test_do_to_age = True
else:
should_test_do_to_age = False
# if failed on the last time it was ran, select the notebook
if failed_on_latest_run:
inferred_failure_rate = 1
# otherwise, calculate the frequency of failure
else:
inferred_failure_rate = fail_count / (pass_count + fail_count)
# If failure rate is high, the chance of testing should be higher
should_test_due_to_failure = random.uniform(0, 1) <= inferred_failure_rate
#if accumulative_resultsi[changed_notebook]['latest_date_ran']
# Additionally, only test a percentage of these
should_test_due_to_random_subset = random.uniform(0, 1) <= (test_percent / 100)
if should_test_due_to_failure or should_test_due_to_random_subset or should_test_do_to_age:
print(f"Selected: {changed_notebook}, {should_test_due_to_failure}, {should_test_due_to_random_subset}")
return True
else:
print(f"Not Selected: {changed_notebook}, pass {pass_count}, fail {fail_count}")
return False
def _process_notebook(
notebook_path: str,
variable_project_id: str,
variable_region: str,
variable_service_account: str,
variable_vpc_network: Optional[str],
):
# Read notebook
with open(notebook_path) as f:
@@ -200,11 +78,8 @@ def _process_notebook(
replacement_map={
"PROJECT_ID": variable_project_id,
"REGION": variable_region,
"SERVICE_ACCOUNT": variable_service_account,
"VPC_NETWORK": variable_vpc_network,
},
)
unique_strings_preprocessor = NotebookProcessors.UniqueStringsPreprocessor()
# Use no-execute preprocessor
(
@@ -213,41 +88,11 @@ def _process_notebook(
) = remove_no_execute_cells_preprocessor.preprocess(nb)
(nb, resources) = update_variables_preprocessor.preprocess(nb, resources)
(nb, resources) = unique_strings_preprocessor.preprocess(nb, resources)
with open(notebook_path, mode="w", encoding="utf-8") as new_file:
nbformat.write(nb, new_file)
def _get_notebook_python_version(notebook_path: str) -> str:
"""
Get the python version for running the notebook if it is specified in
the notebook.
"""
python_version = PYTHON_VERSION
# Load the notebook
file = open(notebook_path)
src = file.read()
nb_json = json.loads(src)
# Iterate over the cells in the ipynb
for cell in nb_json["cells"]:
if cell["cell_type"] == "markdown":
markdown = str.join("", cell["source"])
# Look for the python version specification pattern
re_match = re.search(
r"python version = (\d+\.\d+)", markdown, flags=re.IGNORECASE
)
if re_match:
# get the version number
python_version = re_match.group(1)
break
return python_version
def _create_tag(filepath: str) -> str:
tag = os.path.basename(os.path.normpath(filepath))
tag = re.sub("[^0-9a-zA-Z_.-]+", "-", tag)
@@ -258,31 +103,18 @@ def _create_tag(filepath: str) -> str:
return tag
def process_and_execute_notebook(
container_uri: str,
staging_bucket: str,
artifacts_bucket: str,
variable_project_id: str,
variable_region: str,
variable_service_account: str,
variable_vpc_network: Optional[str],
private_pool_id: Optional[str],
deadline: datetime.datetime,
notebook: str,
should_get_tail_logs: bool = True,
should_get_tail_logs: bool = False,
) -> NotebookExecutionResult:
print(f"Running notebook: {notebook}")
# Handle empty strings
if not variable_vpc_network:
variable_vpc_network = None
if not private_pool_id:
private_pool_id = None
# Create paths
notebook_output_uri = "/".join([artifacts_bucket, pathlib.Path(notebook).name])
@@ -291,67 +123,48 @@ def process_and_execute_notebook(
result = NotebookExecutionResult(
name=tag,
path=notebook,
duration=datetime.timedelta(seconds=0),
start_time=datetime.datetime.now(),
is_pass=False,
output_uri=notebook_output_uri,
log_url="",
build_id="",
logs_bucket="",
error_message=None,
)
# TODO: Handle cases where multiple notebooks have the same name
time_start = datetime.datetime.now()
operation = None
try:
# Get the python version for running the notebook if specified
notebook_exec_python_version = _get_notebook_python_version(
notebook_path=notebook
)
print(f"Running notebook with python {notebook_exec_python_version}")
# Pre-process notebook by substituting variable names
_process_notebook(
notebook_path=notebook,
variable_project_id=variable_project_id,
variable_region=variable_region,
variable_service_account=variable_service_account,
variable_vpc_network=variable_vpc_network,
)
# Upload the pre-processed code to a GCS bucket
code_archive_uri = util.archive_code_and_upload(staging_bucket=staging_bucket)
# Calculate timeout in seconds
timeout_in_seconds = max(
int((deadline - datetime.datetime.now()).total_seconds()), 1
)
operation = execute_notebook_remote.execute_notebook_remote(
code_archive_uri=code_archive_uri,
notebook_uri=notebook,
notebook_output_uri=notebook_output_uri,
container_uri=container_uri,
tag=tag,
region=variable_region,
private_pool_id=private_pool_id,
private_pool_region=variable_region,
timeout_in_seconds=timeout_in_seconds,
python_version=notebook_exec_python_version,
)
operation_metadata = BuildOperationMetadata(mapping=operation.metadata)
result.build_id = operation_metadata.build.id
result.log_url = operation_metadata.build.log_url
result.logs_bucket = operation_metadata.build.logs_bucket
# Block and wait for the result
operation_result = operation.result(timeout=timeout_in_seconds)
operation_result = operation.result()
result.duration = datetime.datetime.now() - result.start_time
result.duration = datetime.datetime.now() - time_start
result.is_pass = True
print(f"{notebook} PASSED in {format_timedelta(result.duration)}.")
except Exception as error:
result.error_message = str(error)
@@ -370,7 +183,7 @@ def process_and_execute_notebook(
except Exception as error:
result.error_message = str(error)
result.duration = datetime.datetime.now() - result.start_time
result.duration = datetime.datetime.now() - time_start
result.is_pass = False
print(
@@ -402,113 +215,32 @@ def get_changed_notebooks(
# Find notebooks
notebooks = []
# Instantiate GitPython objects
repo = git.Repo(os.getcwd())
index = repo.index
if base_branch:
# Get the point at which this branch branches off from main
branching_commits = repo.merge_base("HEAD", f"origin/{base_branch}")
if len(branching_commits) > 0:
branching_commit = branching_commits[0]
print(f"Looking for notebooks that changed from branch: {branching_commit}")
notebooks = [
diff.b_path
for diff in index.diff(branching_commit, paths=test_paths)
if diff.b_path is not None
]
else:
notebooks = []
print(f"Looking for notebooks that changed from branch: {base_branch}")
notebooks = subprocess.check_output(
["git", "diff", "--name-only", f"origin/{base_branch}..."] + test_paths
)
else:
print(f"Looking for all notebooks.")
notebooks_str = subprocess.check_output(["git", "ls-files"] + test_paths)
notebooks = notebooks_str.decode("utf-8").split("\n")
notebooks = subprocess.check_output(["git", "ls-files"] + test_paths)
notebooks = notebooks.decode("utf-8").split("\n")
notebooks = [notebook for notebook in notebooks if notebook.endswith(".ipynb")]
notebooks = [notebook for notebook in notebooks if len(notebook) > 0]
notebooks = [notebook for notebook in notebooks if pathlib.Path(notebook).exists()]
if len(notebooks) > 0:
print(f"Found {len(notebooks)} notebooks:")
for notebook in notebooks:
print(f"\t{notebook}")
return notebooks
def _save_results(results: List[NotebookExecutionResult],
artifacts_bucket: str,
results_file: str):
artifacts_bucket = artifacts_bucket.replace("gs://", "").split('/')[0]
print("Updating build results ...")
build_results = {}
for result in results:
if result.is_pass:
pass_count = 1
fail_count = 0
else:
pass_count = 0
fail_count = 1
if result.error_message is None:
error_type = ''
elif '500 Internal' in result.error_message or 'INTERNAL' in result.error_message or 'internal error' in result.error_message:
error_type = 'INTERNAL'
elif 'context deadline exceeded' in result.error_message or 'TIMEOUT' in result.error_message:
error_type = 'TIMEOUT'
elif 'Quota' in result.error_message or 'quotas are exceeded' in result.error_message:
error_type = 'QUOTA'
elif 'ServiceUnavailable' in result.error_message:
error_type = 'SERVICEUNAVAILABLE'
elif 'ModuleNotFoundError' in result.error_message:
error_type = 'IMPORT'
elif result.is_pass:
error_type = ''
else:
error_type = 'undetermined'
if error_type != '':
log_url = result.log_url
else:
log_url = ''
build_results[result.path] = {
'duration': result.duration.total_seconds(),
'start_time': str(result.start_time),
'passed': pass_count,
'failed': fail_count,
'error_type': error_type,
'log_url': log_url
}
print(f"adding {result.path}")
print(f"Saving accumulative results to {results_file}, nentries {len(build_results)}")
content = json.dumps(build_results)
client = storage.Client()
bucket = client.get_bucket(artifacts_bucket)
bucket.blob(str(results_file)).upload_from_string(content, 'text/json')
def process_and_execute_notebooks(
notebooks: List[str],
container_uri: str,
staging_bucket: str,
artifacts_bucket: str,
results_file: str,
should_parallelize: bool,
timeout: int,
variable_project_id: str,
variable_region: str,
variable_service_account: str,
variable_vpc_network: Optional[str] = None,
private_pool_id: Optional[str] = None,
concurrent_notebooks: Optional[int] = 10,
aiplatform_whl: Optional[str] = None,
private_pool_id: Optional[str],
should_parallelize: bool,
):
"""
Run the notebooks that exist under the folders defined in the test_paths_file.
@@ -529,39 +261,23 @@ def process_and_execute_notebooks(
Required. The GCS staging bucket to write source code to.
artifacts_bucket (str):
Required. The GCS staging bucket to write executed notebooks to.
results_file (str):
Required: The path to the artifacts bucket to save results
variable_project_id (str):
Required. The value for PROJECT_ID to inject into notebooks.
variable_region (str):
Required. The value for REGION to inject into notebooks.
should_parallelize (bool):
Required. Should run notebooks in parallel using a thread pool as opposed to in sequence.
timeout (str):
Required. Timeout string according to https://cloud.google.com/build/docs/build-config-file-schema#timeout.
concurrent_notebooks (int): Max number of notebooks per minute to run in parallel.
aiplatform_whl: alternate whl version of Vertex AI SDK to install
"""
notebook_execution_results: List[NotebookExecutionResult] = []
# Calculate deadline
deadline = datetime.datetime.now() + datetime.timedelta(
seconds=max(timeout - WORKER_TIMEOUT_BUFFER_IN_SECONDS, 0)
)
if len(notebooks) >= 1:
notebook_execution_results: List[NotebookExecutionResult] = []
if len(notebooks) > 0:
print(f"Found {len(notebooks)} modified notebooks: {notebooks}")
if should_parallelize and len(notebooks) > 1:
print(
"Running notebooks in parallel, so no logs will be displayed. Please wait..."
)
with concurrent.futures.ThreadPoolExecutor(max_workers=concurrent_notebooks) as executor:
print(f"Max workers: {executor._max_workers}")
with concurrent.futures.ThreadPoolExecutor(max_workers=None) as executor:
notebook_execution_results = list(
executor.map(
functools.partial(
@@ -571,10 +287,7 @@ def process_and_execute_notebooks(
artifacts_bucket,
variable_project_id,
variable_region,
variable_service_account,
variable_vpc_network,
private_pool_id,
deadline,
),
notebooks,
)
@@ -587,92 +300,48 @@ def process_and_execute_notebooks(
artifacts_bucket=artifacts_bucket,
variable_project_id=variable_project_id,
variable_region=variable_region,
variable_service_account=variable_service_account,
variable_vpc_network=variable_vpc_network,
private_pool_id=private_pool_id,
deadline=deadline,
notebook=notebook,
)
for notebook in notebooks
]
print("\n=== RESULTS ===\n")
results_sorted = sorted(
notebook_execution_results,
key=lambda result: result.is_pass,
reverse=True,
)
# Print results
print(
tabulate(
[
[
result.name,
"PASSED" if result.is_pass else "FAILED",
format_timedelta(result.duration),
result.log_url,
result.output_uri,
result.output_uri_web,
result.logs_bucket,
]
for result in results_sorted
],
headers=[
"build_tag",
"status",
"duration",
"log_url",
"output_uri",
"output_uri_web",
"logs_bucket",
],
)
)
if len(notebooks) == 1:
print("=" * 100)
print("The notebook execution build log:\n")
print("=" * 100)
build_id = results_sorted[0].build_id
logs_bucket_name = (results_sorted[0].logs_bucket).replace("gs://", "")
log_file_name = f"log-{build_id}.txt"
log_contents = util.download_blob_into_memory(
bucket_name=logs_bucket_name,
blob_name=log_file_name,
download_as_text=True,
)
# Remove extra steps from the log
match = re.search("starting Step #4", log_contents, flags=re.IGNORECASE)
if match is not None:
match_index = match.span()[0]
print(log_contents[match_index:])
else:
print(log_contents)
_save_results(results_sorted,
artifacts_bucket,
results_file)
print("\n=== END RESULTS===\n")
total_notebook_duration = functools.reduce(
operator.add,
[datetime.timedelta(seconds=0)]
+ [result.duration for result in results_sorted],
)
print(
f"Cumulative notebook duration: {format_timedelta(total_notebook_duration)}"
)
# Raise error if any notebooks failed
if not all([result.is_pass for result in results_sorted]):
raise RuntimeError("Notebook failures detected. See logs for details")
else:
print("No notebooks modified in this pull request.")
print("\n=== RESULTS ===\n")
results_sorted = sorted(
notebook_execution_results,
key=lambda result: result.is_pass,
reverse=True,
)
# Print results
print(
tabulate(
[
[
result.name,
"PASSED" if result.is_pass else "FAILED",
format_timedelta(result.duration),
result.log_url,
]
for result in results_sorted
],
headers=["build_tag", "status", "duration", "log_url"],
)
)
print("\n=== END RESULTS===\n")
total_notebook_duration = functools.reduce(
operator.add,
[datetime.timedelta(seconds=0)]
+ [result.duration for result in results_sorted],
)
print(f"Cumulative notebook duration: {format_timedelta(total_notebook_duration)}")
# Raise error if any notebooks failed
if not all([result.is_pass for result in results_sorted]):
raise RuntimeError("Notebook failures detected. See logs for details")
-1
View File
@@ -16,7 +16,6 @@
"""A CLI to download (optional) and run a single notebook locally"""
import argparse
import execute_notebook_helper
parser = argparse.ArgumentParser(description="Run a single notebook locally.")
+9 -20
View File
@@ -15,20 +15,17 @@
"""Methods to run a notebook locally"""
import errno
import os
import shutil
import sys
import os
import errno
import papermill as pm
from google.cloud.aiplatform import utils
import shutil
from utils import util
from google.cloud.aiplatform import utils
# This script is used to execute a notebook and write out the output notebook.
# This is used to force papermill to use this kernel to run the notebook instead of any defined inside the notebook itself
DEFAULT_KERNEL_NAME = "python3"
def execute_notebook(
notebook_source: str,
@@ -53,17 +50,6 @@ def execute_notebook(
execution_exception = None
print("\n=== DOWNLOAD EXECUTED NOTEBOOK ===\n")
print(f"Please debug the executed notebook by downloading the executed notebook:")
print("Option 1. Using gsutil. Run the following command in your terminal.")
print(f'\tgsutil cp "{output_file_or_uri}" .')
print("Option 2. Using this link.")
print(f"\thttps://storage.googleapis.com/{output_file_or_uri[5:]}")
print("\n======\n")
# Execute notebook
try:
# Execute notebook
@@ -72,7 +58,6 @@ def execute_notebook(
output_path=notebook_source,
progress_bar=should_log_output,
request_save_on_cell_execute=should_log_output,
kernel_name=DEFAULT_KERNEL_NAME,
log_output=should_log_output,
stdout_file=sys.stdout if should_log_output else None,
stderr_file=sys.stderr if should_log_output else None,
@@ -86,6 +71,10 @@ def execute_notebook(
util.upload_file(notebook_source, remote_file_path=output_file_or_uri)
print("\n=== EXECUTION FINISHED ===\n")
print(
f"Please debug the executed notebook by downloading: {output_file_or_uri}"
)
print("\n======\n")
else:
# Create directories if they don't exist
if not os.path.exists(os.path.dirname(output_file_or_uri)):
+19 -23
View File
@@ -16,18 +16,22 @@
"""Methods to run a notebook on Google Cloud Build"""
from re import sub
from typing import Optional
import google.auth
import yaml
from google.api_core import client_options, operation
from google.cloud.aiplatform import utils
from google.cloud.devtools import cloudbuild_v1
from google.cloud.devtools.cloudbuild_v1.types import Source, StorageSource
from google.protobuf import duration_pb2
from yaml.loader import FullLoader
import google.auth
from google.cloud.devtools import cloudbuild_v1
from google.cloud.devtools.cloudbuild_v1.types import Source, StorageSource
from typing import Optional
import yaml
from google.cloud.aiplatform import utils
from google.api_core import operation, client_options
CLOUD_BUILD_FILEPATH = ".cloud-build/notebook-execution-test-cloudbuild-single.yaml"
TIMEOUT_IN_SECONDS = 86400
SERVICE_BASE_PATH = "cloudbuild.googleapis.com"
@@ -36,38 +40,30 @@ def execute_notebook_remote(
notebook_uri: str,
notebook_output_uri: str,
container_uri: str,
region: str,
private_pool_id: Optional[str],
private_pool_region: Optional[str],
tag: Optional[str],
timeout_in_seconds: Optional[int] = None,
python_version: Optional[str] = None
) -> operation.Operation:
"""Create and execute a single notebook on Google Cloud Build"""
# Load build steps from YAML
cloudbuild_config = yaml.load(open(CLOUD_BUILD_FILEPATH), Loader=FullLoader)
substitutions = {
"_PYTHON_IMAGE": container_uri,
"_NOTEBOOK_GCS_URI": notebook_uri,
"_NOTEBOOK_OUTPUT_GCS_URI": notebook_output_uri,
"_PYTHON_VERSION" : f"python{python_version}"
}
if python_version is not None:
substitutions["_PYTHON_VERSION"] = "python" + python_version
build = cloudbuild_v1.Build()
options: Optional[client_options.ClientOptions] = None
if private_pool_id and private_pool_region:
# substitutions["_PRIVATE_POOL_NAME"] = private_pool_id
build.options = cloudbuild_config.get("options")
build.options.pool = {"name": private_pool_id}
if private_pool_id:
substitutions["_PRIVATE_POOL_NAME"] = private_pool_id
build.options = cloudbuild_config["options"]
# Switch to the regional endpoint of the pool
options = client_options.ClientOptions(
api_endpoint=f"{private_pool_region}-{SERVICE_BASE_PATH}"
api_endpoint=f"{region}-{SERVICE_BASE_PATH}"
)
# Authorize the client with Google defaults
@@ -89,8 +85,8 @@ def execute_notebook_remote(
build.steps = cloudbuild_config["steps"]
build.substitutions = substitutions
build.timeout = duration_pb2.Duration(seconds=timeout_in_seconds)
build.queue_ttl = duration_pb2.Duration(seconds=timeout_in_seconds)
build.timeout = duration_pb2.Duration(seconds=TIMEOUT_IN_SECONDS)
build.queue_ttl = duration_pb2.Duration(seconds=TIMEOUT_IN_SECONDS)
if tag:
build.tags = [tag]
@@ -4,35 +4,28 @@ steps:
entrypoint: /bin/sh
args:
- -c
- 'gcloud config list --quiet'
- 'gcloud config list'
# Check the Python version
- name: ${_PYTHON_IMAGE}
entrypoint: /bin/sh
args:
- -c
- ${_PYTHON_VERSION} .cloud-build/CheckPythonVersion.py -q
# Create a virtual environment
- name: ${_PYTHON_IMAGE}
entrypoint: /bin/sh
args:
- -c
- ${_PYTHON_VERSION} -m venv workspace/env
- 'python3 .cloud-build/CheckPythonVersion.py'
# Install Python dependencies
- name: ${_PYTHON_IMAGE}
entrypoint: /bin/sh
args:
- -c
- . workspace/env/bin/activate &&
python -m pip -q install -U pip &&
python -m pip -q install -U -r .cloud-build/requirements.txt
- 'python3 -m pip install -U pip && python3 -m pip install -U --user -r .cloud-build/requirements.txt'
# Install Python dependencies and run testing script
- name: ${_PYTHON_IMAGE}
entrypoint: /bin/sh
args:
- -c
- |
. workspace/env/bin/activate &&
python .cloud-build/execute_notebook_cli.py --notebook_source "${_NOTEBOOK_GCS_URI}" --output_file_or_uri "${_NOTEBOOK_OUTPUT_GCS_URI}"
- 'python3 -m pip install -U pip && python3 -m pip freeze && python3 .cloud-build/execute_notebook_cli.py --notebook_source "${_NOTEBOOK_GCS_URI}" --output_file_or_uri "${_NOTEBOOK_OUTPUT_GCS_URI}"'
env:
- 'IS_TESTING=1'
timeout: 86400s
options:
pool:
name: ${_PRIVATE_POOL_NAME}
@@ -4,42 +4,35 @@ steps:
entrypoint: /bin/sh
args:
- -c
- gcloud config list --quiet
- 'gcloud config list'
# Check the Python version
- name: ${_PYTHON_IMAGE}
entrypoint: /bin/sh
args:
- -c
- python3 .cloud-build/CheckPythonVersion.py -q
# Fetch full repo for diff purposes
- name: gcr.io/cloud-builders/git
args: [fetch, --unshallow, --quiet]
# Create a virtual environment
- 'python3 .cloud-build/CheckPythonVersion.py'
# Fetch base branch if required
- name: ${_PYTHON_IMAGE}
entrypoint: /bin/sh
args:
- -c
- python3 -m venv workspace/env
- 'if [ -n "${_BASE_BRANCH}" ]; then git fetch origin "${_BASE_BRANCH}":refs/remotes/origin/"${_BASE_BRANCH}"; else echo "Skipping fetch."; fi'
# Install Python dependencies
- name: ${_PYTHON_IMAGE}
entrypoint: /bin/sh
args:
- -c
- . workspace/env/bin/activate &&
python3 -m pip -q install -U pip &&
python3 -m pip -q install -U -r .cloud-build/requirements.txt
- 'python3 -m pip install -U pip && python3 -m pip install -U --user -r .cloud-build/requirements.txt'
# Install Python dependencies and run testing script
# TODO: Only pass in private_pool_id if it is set
- name: ${_PYTHON_IMAGE}
entrypoint: /bin/sh
args:
- -c
- |
. workspace/env/bin/activate &&
python3 .cloud-build/execute_changed_notebooks_cli.py --test_paths_file "${_TEST_PATHS_FILE}" --base_branch "${_FORCED_BASE_BRANCH}" --container_uri ${_PYTHON_IMAGE} --staging_bucket ${_GCS_STAGING_BUCKET} --artifacts_bucket ${_GCS_STAGING_BUCKET}/executed_notebooks/PR_${_PR_NUMBER}/BUILD_${BUILD_ID} --variable_project_id ${PROJECT_ID} --variable_region ${_GCP_REGION} --variable_service_account ${_GCP_SERVICE_ACCOUNT} --variable_vpc_network "${_GCP_VPC_NETWORK_NAME}" `if [ ! -z "${_PRIVATE_POOL_NAME}" ]; then echo "--private_pool_id ${_PRIVATE_POOL_NAME}"; fi` --build_id ${BUILD_ID} --test_percent=${_TEST_PERCENT} --concurrent_notebooks=${_CONCURRENT_NOTEBOOKS} --run_first_file=${_RUN_FIRST_FILE}
- 'python3 -m pip install -U pip && python3 -m pip freeze && python3 .cloud-build/execute_changed_notebooks_cli.py --test_paths_file "${_TEST_PATHS_FILE}" --base_branch "${_FORCED_BASE_BRANCH}" --container_uri ${_PYTHON_IMAGE} --staging_bucket ${_GCS_STAGING_BUCKET} --artifacts_bucket ${_GCS_STAGING_BUCKET}/executed_notebooks/PR_${_PR_NUMBER}/BUILD_${BUILD_ID} --variable_project_id ${PROJECT_ID} --variable_region ${_GCP_REGION} `if [ ! -z "${_PRIVATE_POOL_NAME}" ]; then echo "--private_pool_id ${_PRIVATE_POOL_NAME}"; fi`'
env:
- 'IS_TESTING=1'
timeout: 86400s
options:
pool:
name: ${_PRIVATE_POOL_NAME}
name: ${_PRIVATE_POOL_NAME}
+2 -7
View File
@@ -3,15 +3,10 @@ numpy
jupyter
nbconvert
papermill
pandas
matplotlib
tabulate
google-cloud-aiplatform
google-cloud-storage
google-cloud-build
google-cloud-storage
ratemate
GitPython
tqdm
fsspec
pandas
gcloud
-8
View File
@@ -1,8 +0,0 @@
notebooks/official/pipelines/google_cloud_pipeline_components_automl_text.ipynb
notebooks/official/generative_ai/rlhf_tune_llm.ipynb
notebooks/official/generative_ai/tune_peft.ipynb
notebooks/official/prediction/llm_streaming_prediction.ipynb
notebooks/official/migration/sdk-automl-text-classification-batch-prediction.ipynb
notebooks/official/vizier/get_started_vertex_vizier.ipynb
notebooks/official/workbench/sentiment_analysis/Sentiment_Analysis.ipynb
notebooks/official/model_monitoring/get_started_with_model_monitoring_automl.ipynb
1 notebooks/official/pipelines/google_cloud_pipeline_components_automl_text.ipynb
2 notebooks/official/generative_ai/rlhf_tune_llm.ipynb
3 notebooks/official/generative_ai/tune_peft.ipynb
4 notebooks/official/prediction/llm_streaming_prediction.ipynb
5 notebooks/official/migration/sdk-automl-text-classification-batch-prediction.ipynb
6 notebooks/official/vizier/get_started_vertex_vizier.ipynb
7 notebooks/official/workbench/sentiment_analysis/Sentiment_Analysis.ipynb
8 notebooks/official/model_monitoring/get_started_with_model_monitoring_automl.ipynb
+4 -2
View File
@@ -1,3 +1,5 @@
notebooks/official/vizier/gapic-vizier-multi-objective-optimization.ipynb
notebooks/official/pipelines/lightweight_functions_component_io_kfp.ipynb
notebooks/official/matching_engine/intro-swivel.ipynb
notebooks/official/ml_metadata/sdk-metric-parameter-tracking-for-locally-trained-models.ipynb
notebooks/official/custom/custom-tabular-bq-managed-dataset.ipynb
.cloud-build/tests/python_version_test.ipynb
notebooks/official/pipelines/metrics_viz_run_compare_kfp.ipynb
-1
View File
@@ -1 +0,0 @@
notebooks/official/custom/custom-tabular-bq-managed-dataset.ipynb
-46
View File
@@ -1,46 +0,0 @@
# grep PASSED tests.txt | cut -c 10-100 >passed.txt
import os
repo_dir = '/home/jupyter/vertex-ai-samples/'
repo_dir_len = len(repo_dir)
official_dir = repo_dir + 'notebooks/official'
entries = os.scandir(official_dir)
folders = []
for entry in entries:
if entry.is_dir():
folders.append(entry.path)
# Passing
with open('passed.txt', 'r') as pass_file:
notebook_names = pass_file.readlines()
notebooks = []
for folder in folders:
entries = os.scandir(folder)
for entry in entries:
for notebook in notebook_names:
if entry.name == notebook.rstrip():
notebooks.append(entry.path[repo_dir_len:])
with open('passing_tests.txt', 'w') as f:
for notebook in notebooks:
f.write(notebook + '\n')
# Failing
with open('failed.txt', 'r') as fail_file:
notebook_names = fail_file.readlines()
notebooks = []
for folder in folders:
entries = os.scandir(folder)
for entry in entries:
for notebook in notebook_names:
if entry.name == notebook.rstrip():
notebooks.append(entry.path[repo_dir_len:])
with open('failing_tests.txt', 'w') as f:
for notebook in notebooks:
f.write(notebook + '\n')
@@ -1,61 +0,0 @@
{
"cells": [
{
"cell_type": "markdown",
"metadata": {
"id": "57a3d44ed8a8"
},
"source": [
"### Set up your Google Cloud project\n",
"\n",
"**_NOTE_**: This notebook has been tested in the following environment:\n",
"\n",
"* Python version = 3.7\n",
"\n",
"**The following steps are required, regardless of your notebook environment.**\n",
"\n",
"1. [Select or create a Google Cloud project](https://console.cloud.google.com/cloud-resource-manager). When you first create an account, you get a $300 free credit towards your compute/storage costs.\n",
"\n",
"1. [Make sure that billing is enabled for your project](https://cloud.google.com/billing/docs/how-to/modify-project).\n",
"\n",
"1. [Enable the Vertex AI API and Compute Engine API](https://console.cloud.google.com/flows/enableapi?apiid=aiplatform.googleapis.com,compute_component).\n",
"\n",
"1. If you are running this notebook locally, you will need to install the [Cloud SDK](https://cloud.google.com/sdk).\n",
"\n",
"1. Enter your project ID in the cell below. Then run the cell to make sure the\n",
"Cloud SDK uses the right project for all the commands in this notebook.\n",
"\n",
"**Note**: Jupyter runs lines prefixed with `!` as shell commands, and it interpolates Python variables prefixed with `$` into these commands."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "c6516f90311b"
},
"outputs": [],
"source": [
"# test if the right python version is being used\n",
"import sys\n",
"\n",
"actual_python_version = f\"{sys.version_info.major}.{sys.version_info.minor}\"\n",
"print(f\"Runtime python version: {actual_python_version}\")\n",
"\n",
"assert actual_python_version == \"3.7\", \"Wrong python version!\""
]
}
],
"metadata": {
"colab": {
"name": "python_version_test.ipynb",
"toc_visible": true
},
"kernelspec": {
"display_name": "Python 3",
"name": "python3"
}
},
"nbformat": 4,
"nbformat_minor": 0
}
@@ -1,33 +0,0 @@
import sys
from execute_changed_notebooks_helper import (load_results, select_notebook)
def test_load_results():
bucket: str = "cloud-build-notebooks-presubmit"
bucket_file: str = "build_results"
accum = load_results(bucket, bucket_file)
print(accum)
assert len(accum) > 0
def test_select_notebook():
bucket: str = "cloud-build-notebooks-presubmit"
bucket_file: str = "build_results"
accum = load_results(bucket, bucket_file)
n_select = 0
n_notselect = 0
for notebook in accum:
if select_notebook(notebook, accum, 50):
n_select += 1
else:
n_notselect += 1
print(f"SELECTED {n_select}, NOT SELECTED {n_notselect}")
assert n_select > 0
assert n_notselect > 0
+3 -65
View File
@@ -13,12 +13,8 @@
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import Dict
import random
import string
from nbconvert.preprocessors import Preprocessor
from typing import Dict
from . import UpdateNotebookVariables as update_notebook_variables
@@ -35,7 +31,7 @@ class RemoveNoExecuteCells(Preprocessor):
class UpdateVariablesPreprocessor(Preprocessor):
def __init__(self, replacement_map: Dict[str, str]):
def __init__(self, replacement_map: Dict):
self._replacement_map = replacement_map
@staticmethod
@@ -64,62 +60,4 @@ class UpdateVariablesPreprocessor(Preprocessor):
executable_cells.append(cell)
notebook.cells = executable_cells
return notebook, resources
# Generate a uuid of a specifed length
def generate_uuid(length: int = 8) -> str:
return "".join(random.choices(string.ascii_lowercase + string.digits, k=length))
class UniqueStringsPreprocessor(Preprocessor):
# A preprocessor that replaces strings that end with "-unique" or "_unique" with a uuid.
@staticmethod
def update_unique_strings(content: str):
# Replace strings that end with "-unique" or "_unique" with a uuid.
unique_id = generate_uuid()
return (
content.replace('-unique"', f'-{unique_id}"')
.replace("-unique'", f'-{unique_id}"')
.replace('_unique"', f'_{unique_id}"')
.replace("_unique'", f'_{unique_id}"')
)
def preprocess(self, notebook, resources=None):
executable_cells = []
for cell in notebook.cells:
if cell.cell_type == "code":
cell.source = self.update_unique_strings(
content=cell.source,
)
executable_cells.append(cell)
notebook.cells = executable_cells
return notebook, resources
class VertexAIInstallProprocessor(Preprocessor):
def __init__(self, vertex_ai_wheel):
self.vertex_ai_wheel = vertex_ai_wheel
@staticmethod
def update_vertex_ai_install(content: str):
if "google-cloud-aiplatform" not in content:
return content
return (
f"gsutil cp {self.vertex_ai_wheel} google-cloud-aiplatform.whl\n" +
content.replace("google-cloud-aiplatform\n", "google-cloud-aiplatform.whl\n")
.replace("google-cloud-aiplatform ", "google-cloud-aiplatform.whl ")
)
def preprocess(self, notebook, resources=None):
executable_cells = []
for cell in notebook.cells:
if cell.cell_type == "code":
cell.source = self.update_vertex_ai_install(
content=cell.source,
)
executable_cells.append(cell)
notebook.cells = executable_cells
return notebook, resources
+41 -2
View File
@@ -35,8 +35,47 @@ Variables in conditionals can also be replaced:
def get_updated_value(content: str, variable_name: str, variable_value: str) -> str:
return re.sub(
rf"({variable_name}.*? = .*?[\",\'])\[.+?\]([\",\'].*?)",
rf"\g<1>{variable_value}\g<2>",
rf"({variable_name}.*?=.*?[\",\'])\[.+?\]([\",\'].*?)",
rf"\1{variable_value}\2",
content,
flags=re.M,
)
def test_update_value():
new_content = get_updated_value(
content='asdf\nPROJECT_ID = "[your-project-id]" #@param {type:"string"} \nasdf',
variable_name="PROJECT_ID",
variable_value="sample-project",
)
assert (
new_content
== 'asdf\nPROJECT_ID = "sample-project" #@param {type:"string"} \nasdf'
)
def test_update_value_single_quotes():
new_content = get_updated_value(
content="PROJECT_ID = '[your-project-id]'",
variable_name="PROJECT_ID",
variable_value="sample-project",
)
assert new_content == "PROJECT_ID = 'sample-project'"
def test_update_value_avoidance():
new_content = get_updated_value(
content="PROJECT_ID = shell_output[0] ",
variable_name="PROJECT_ID",
variable_value="sample-project",
)
assert new_content == "PROJECT_ID = shell_output[0] "
def test_region():
new_content = get_updated_value(
content='REGION = "[your-region]" # @param {type:"string"}',
variable_name="REGION",
variable_value="us-central1",
)
assert new_content == 'REGION = "us-central1" # @param {type:"string"}'
@@ -1,73 +0,0 @@
'''
Viewer for the weekly regression testing of the official notebooks
Cloud Storage location: gs://cloud-build-notebooks-presubmit/build_results/
'''
import argparse
import json
from util import download_file
import csv
import datetime
from google.cloud import storage
BUILD_BUCKET = "cloud-build-notebooks-presubmit"
BUILD_FOLDER = "build_results"
parser = argparse.ArgumentParser()
parser.add_argument('--file', dest='file',
default=None, type=str, help='build results filei (local or GCS)')
args = parser.parse_args()
investigate = {}
with open('investigate.csv', 'r') as csvfile:
reader = csv.reader(csvfile)
for row in reader:
investigate[row[0][:-6]] = row[1]
if not args.file:
client = storage.Client()
blobs = client.list_blobs(BUILD_BUCKET, prefix=BUILD_FOLDER)
newest_time = datetime.datetime(2000, 1, 1)
for blob in blobs:
# individual PR
if blob.size < 2000:
continue
time_created = blob.time_created.replace(tzinfo=None)
if time_created > newest_time:
newest_time = time_created
args.file = f"gs://{BUILD_BUCKET}/{blob.name}"
if args.file.startswith("gs://"):
path = args.file[5:]
bucket = path.split('/')[0]
file = path[len(bucket)+1:]
download_file(bucket, file, "build.json")
args.file = "build.json"
with open(args.file, 'r') as f:
results = json.load(f)
for item in results.items():
notebook = item[0][len("/notebooks/official/")-1:-6]
if item[1]['passed']:
passed = "PASS"
else:
if notebook in investigate:
passed = "INVG"
else:
passed = "FAIL"
error = item[1]['error_type']
if passed == "FAIL":
if error == '':
error = "undetermined"
if 'log_url' in item[1]:
log_url = item[1]['log_url']
else:
log_url = ''
else:
log_url = ''
print(f"{notebook:75} {passed} {error:10} {log_url}")
-19
View File
@@ -1,19 +0,0 @@
notebook,status
prediction/llm_streaming_prediction.ipynb,wait_for_fix
custom/get_started_with_vertex_endpoint_and_shared_vm.ipynb,issue 2527
feature_store/online_feature_serving_and_fetching_bigquery_data_with_feature_store.ipynb,wait_for_reaper
feature_store/online_feature_serving_and_vector_retrieval_bigquery_data_with_feature_store.ipynb,wait_for_reaper
pipelines/google_cloud_pipeline_components_TPU_model_train_upload_deploy.ipynb,wait_for_fix
explainable_ai/sdk_custom_image_classification_batch_explain.ipynb,issue 2528
explainable_ai/sdk_custom_image_classification_online_explain.ipynb,issue 2528
explainable_ai/sdk_custom_tabular_regression_online_explain.ipynb,issue 2528
explainable_ai/sdk_automl_tabular_binary_classification_batch_explain.ipynb,issue 2528
explainable_ai/xai_image_classification_feature_attributions.ipynb,issue 2528
matching_engine,sdk_matching_engine_create_stack_overflow_embeddings.ipynb,issue 2530
automl/automl_forecasting_bqml_arima_plus_comparison.ipynb,flaky
model_evaluation/custom_tabular_regression_model_evaluation.ipynb,regr
experiments/get_started_with_vertex_experiments.ipynb,regr
experiments/comparing_local_trained_models.ipynb,regr
generative_ai/tune_peft.ipynb,internal
pipelines/custom_model_training_and_batch_prediction.ipynb,regr
feature_store/online_feature_serving_and_fetching_bigquery_data_with_feature_store_optimized.ipynb,wait_for_reaper
1 notebook status
2 prediction/llm_streaming_prediction.ipynb wait_for_fix
3 custom/get_started_with_vertex_endpoint_and_shared_vm.ipynb issue 2527
4 feature_store/online_feature_serving_and_fetching_bigquery_data_with_feature_store.ipynb wait_for_reaper
5 feature_store/online_feature_serving_and_vector_retrieval_bigquery_data_with_feature_store.ipynb wait_for_reaper
6 pipelines/google_cloud_pipeline_components_TPU_model_train_upload_deploy.ipynb wait_for_fix
7 explainable_ai/sdk_custom_image_classification_batch_explain.ipynb issue 2528
8 explainable_ai/sdk_custom_image_classification_online_explain.ipynb issue 2528
9 explainable_ai/sdk_custom_tabular_regression_online_explain.ipynb issue 2528
10 explainable_ai/sdk_automl_tabular_binary_classification_batch_explain.ipynb issue 2528
11 explainable_ai/xai_image_classification_feature_attributions.ipynb issue 2528
12 matching_engine sdk_matching_engine_create_stack_overflow_embeddings.ipynb issue 2530
13 automl/automl_forecasting_bqml_arima_plus_comparison.ipynb flaky
14 model_evaluation/custom_tabular_regression_model_evaluation.ipynb regr
15 experiments/get_started_with_vertex_experiments.ipynb regr
16 experiments/comparing_local_trained_models.ipynb regr
17 generative_ai/tune_peft.ipynb internal
18 pipelines/custom_model_training_and_batch_prediction.ipynb regr
19 feature_store/online_feature_serving_and_fetching_bigquery_data_with_feature_store_optimized.ipynb wait_for_reaper
@@ -1,14 +0,0 @@
from utils import NotebookProcessors
def test_update_value():
# Test that the content was updated
preprocessor = NotebookProcessors.UniqueStringsPreprocessor()
content = 'PROJECT_ID = "your-project-id-unique"'
new_content = preprocessor.update_unique_strings(content)
assert new_content != content
assert new_content.startswith('PROJECT_ID = "your-project-id-')
assert new_content.endswith('"')
@@ -1,63 +0,0 @@
from utils import UpdateNotebookVariables
def test_update_value():
new_content = UpdateNotebookVariables.get_updated_value(
content='asdf\nPROJECT_ID = "[your-project-id]" #@param {type:"string"} \nasdf',
variable_name="PROJECT_ID",
variable_value="sample-project",
)
assert (
new_content
== 'asdf\nPROJECT_ID = "sample-project" #@param {type:"string"} \nasdf'
)
def test_update_value_single_quotes():
new_content = UpdateNotebookVariables.get_updated_value(
content="PROJECT_ID = '[your-project-id]'",
variable_name="PROJECT_ID",
variable_value="sample-project",
)
assert new_content == "PROJECT_ID = 'sample-project'"
def test_update_value_avoidance():
new_content = UpdateNotebookVariables.get_updated_value(
content="PROJECT_ID = shell_output[0] ",
variable_name="PROJECT_ID",
variable_value="sample-project",
)
assert new_content == "PROJECT_ID = shell_output[0] "
def test_region():
new_content = UpdateNotebookVariables.get_updated_value(
content='REGION = "[your-region]" # @param {type:"string"}',
variable_name="REGION",
variable_value="us-central1",
)
assert new_content == 'REGION = "us-central1" # @param {type:"string"}'
def test_region_equal_equals_ignore():
# Tests that == is ignored
new_content = UpdateNotebookVariables.get_updated_value(
content='REGION == "[your-region]" # @param {type:"string"}',
variable_name="REGION",
variable_value="us-central1",
)
assert new_content == 'REGION == "[your-region]" # @param {type:"string"}'
def test_service_account():
# Tests that == is ignored
new_content = UpdateNotebookVariables.get_updated_value(
content='SERVICE_ACCOUNT = "[your-service-account]" # @param {type:"string"}',
variable_name="SERVICE_ACCOUNT",
variable_value="12345-compute@developer.gserviceaccount.com",
)
assert (
new_content
== 'SERVICE_ACCOUNT = "12345-compute@developer.gserviceaccount.com" # @param {type:"string"}'
)
+7 -33
View File
@@ -1,13 +1,13 @@
from datetime import datetime
from typing import Optional
from google.cloud import storage
from google.cloud.aiplatform import utils
from google.auth import credentials as auth_credentials
import os
import subprocess
import tarfile
import uuid
from datetime import datetime
from typing import Optional, Union
from google.auth import credentials as auth_credentials
from google.cloud import storage
from google.cloud.aiplatform import utils
def download_file(bucket_name: str, blob_name: str, destination_file: str) -> str:
@@ -57,30 +57,4 @@ def archive_code_and_upload(staging_bucket: str):
print(f"Uploaded source code archive to {source_archived_file_gcs}")
return source_archived_file_gcs
def download_blob_into_memory(
bucket_name: str, blob_name: str, download_as_text: Optional[bool] = False
) -> Union[bytes, str]:
"""
Downloads a blob into memory as byte or as text if
download_as_text is set to True.
"""
storage_client = storage.Client()
bucket = storage_client.bucket(bucket_name)
# Construct a client side representation of a blob.
blob = bucket.blob(blob_name)
# Download the blob content
if download_as_text:
contents = blob.download_as_text()
else:
contents = blob.download_as_bytes()
print(f"Downloaded storage object {blob_name} from bucket {bucket_name}.")
return contents
return source_archived_file_gcs
-11
View File
@@ -1,11 +0,0 @@
sdk2_remote_tabnet_training.ipynb
remote_hyperparameter_tuning.ipynb
remote_prediction.ipynb
remote_training_bigframes_pytorch.ipynb
remote_training_bigframes_sklearn.ipynb
remote_training_bigframes_tensorflow.ipynb
remote_training_lightning.ipynb
remote_training_pytorch.ipynb
remote_training_sklearn.ipynb
remote_training_tensorflow_with_autologging.ipynb
@@ -1,23 +0,0 @@
steps:
# Fetch full repo for diff purposes
- name: gcr.io/cloud-builders/git
args: [fetch, --unshallow, --quiet]
# Create a virtual environment
- name: ${_PYTHON_IMAGE}
entrypoint: /bin/sh
args:
- -c
- python3 -m venv workspace/env
# Install Python dependencies and run testing script
- name: ${_PYTHON_IMAGE}
entrypoint: /bin/sh
args:
- -c
- |
. workspace/env/bin/activate &&
python3 notebooks/notebook_template_review.py --web --title --steps --desc --linkback --notebook-dir=notebooks/official --skip-file=${_DO_NOT_INDEX_FILE} >web.html
artifacts:
objects:
location: gs://${_GCS_ARTIFACTS_BUCKET}/webdoc
paths: ['web.html']
timeout: 86400s
+9 -19
View File
@@ -1,28 +1,18 @@
**REQUIRED:** Add a summary of your PR here, typically including why the change is needed and what was changed. Include any design alternatives for discussion purposes.
<br>
--- YOUR PR SUMMARY GOES HERE ---
<br><br><br>
**REQUIRED:** Fill out the below checklists or remove if irrelevant
1. If you are opening a PR for `Official Notebooks` under the [notebooks/official](https://github.com/GoogleCloudPlatform/vertex-ai-samples/tree/main/notebooks/official) folder, follow this mandatory checklist:
If you are opening a PR for `Official Notebooks` under the [notebooks/official](https://github.com/GoogleCloudPlatform/vertex-ai-samples/tree/main/notebooks/official) folder, follow this mandatory checklist:
- [ ] Use the [notebook template](https://github.com/GoogleCloudPlatform/vertex-ai-samples/blob/main/notebooks/notebook_template.ipynb) as a starting point.
- [ ] Follow the style and grammar rules outlined in the above notebook template.
- [ ] Verify the notebook runs successfully in Colab since the automated tests cannot guarantee this even when it passes.
- [ ] Passes all the required automated checks. You can locally test for formatting and linting with these [instructions](https://github.com/GoogleCloudPlatform/vertex-ai-samples/blob/main/CONTRIBUTING.md#code-quality-checks).
- [ ] Passes all the required automated checks. You can locally test for formatting and linting with these [instructions](https://github.com/GoogleCloudPlatform/vertex-ai-samples/blob/main/docs/contributing.md#code-quality-checks).
- [ ] You have consulted with a tech writer to see if tech writer review is necessary. If so, the notebook has been reviewed by a tech writer, and they have approved it.
- [ ] This notebook has been added to the [CODEOWNERS](https://github.com/GoogleCloudPlatform/vertex-ai-samples/blob/main/notebooks/official/CODEOWNERS) file under the `Official Notebooks` section, pointing to the author or the author's team.
- [ ] This notebook has been added to the [CODEOWNERS](https://github.com/GoogleCloudPlatform/vertex-ai-samples/blob/main/docs/CODEOWNERS) file under `# Official Notebooks` section, pointing to the author or the author's team.
- [ ] The Jupyter notebook cleans up any artifacts it has created (datasets, ML models, endpoints, etc) so as not to eat up unnecessary resources.
<br>
2. If you are opening a PR for `Community Notebooks` under the [notebooks/community](https://github.com/GoogleCloudPlatform/vertex-ai-samples/tree/main/notebooks/community) folder:
- [ ] This notebook has been added to the [CODEOWNERS](https://github.com/GoogleCloudPlatform/vertex-ai-samples/blob/main/notebooks/community/CODEOWNERS) file under the `Community Notebooks` section, pointing to the author or the author's team.
- [ ] Passes all the required formatting and linting checks. You can locally test with these [instructions](https://github.com/GoogleCloudPlatform/vertex-ai-samples/blob/main/CONTRIBUTING.md#code-quality-checks).
If you are opening a PR for `Community Notebooks` under the [notebooks/community](https://github.com/GoogleCloudPlatform/vertex-ai-samples/tree/main/notebooks/community) folder:
- [ ] This notebook has been added to the [CODEOWNERS](https://github.com/GoogleCloudPlatform/vertex-ai-samples/blob/main/docs/CODEOWNERS) file under the `# Community Notebooks` section, pointing to the author or the author's team.
- [ ] Passes all the required formatting and linting checks. You can locally test with these [instructions](https://github.com/GoogleCloudPlatform/vertex-ai-samples/blob/main/docs/contributing.md#code-quality-checks).
<br>
3. If you are opening a PR for `Community Content` under the [community-content](https://github.com/GoogleCloudPlatform/vertex-ai-samples/tree/main/community-content) folder:
If you are opening a PR for `Community Content` under the [community-content](https://github.com/GoogleCloudPlatform/vertex-ai-samples/tree/main/community-content) folder:
- [ ] Make sure your main `Content Directory Name` is descriptive, informative, and includes some of the key products and attributes of your content, so that it is differentiable from other content
- [ ] The main content directory has been added to the [CODEOWNERS](https://github.com/GoogleCloudPlatform/vertex-ai-samples/blob/main/community-content/CODEOWNERS) file under the `Community Content` section, pointing to the author or the author's team.
- [ ] Passes all the required formatting and linting checks. You can locally test with these [instructions](https://github.com/GoogleCloudPlatform/vertex-ai-samples/blob/main/CONTRIBUTING.md#code-quality-checks).
- [ ] The main content directory has been added to the [CODEOWNERS](https://github.com/GoogleCloudPlatform/vertex-ai-samples/blob/main/docs/CODEOWNERS) file under the `# Community Content` section, pointing to the author or the author's team.
- [ ] Passes all the required formatting and linting checks. You can locally test with these [instructions](https://github.com/GoogleCloudPlatform/vertex-ai-samples/blob/main/docs/contributing.md#code-quality-checks).
-10
View File
@@ -1,10 +0,0 @@
version: 2
updates:
# Ignore model garden dockerfiles:
- package-ecosystem: "npm"
directory: "/community-content/vertex_model_garden"
schedule:
interval: "monthly"
ignore:
- dependency-name: "*"
+2 -4
View File
@@ -7,11 +7,9 @@ jobs:
runs-on: ubuntu-latest
steps:
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: '3.x'
uses: actions/setup-python@v2
- name: Fetch pull request branch
uses: actions/checkout@v4
uses: actions/checkout@v2
with:
fetch-depth: 0
- name: Fetch base main branch
-20
View File
@@ -1,20 +0,0 @@
# To use this image, run this command with the desired notebook args from the top-level vertex-ai-samples directory:
# 1. To lint all changed notebooks:
# docker run -v ${PWD}:/setup/app gcr.io/python-docs-samples-tests/notebook_linter:latest
# 2. To lint specific notebooks:
# docker run -v ${PWD}:/setup/app gcr.io/python-docs-samples-tests/notebook_linter:latest notebooks/1.ipynb notebooks/2.ipynb
FROM python:3.13
WORKDIR setup
COPY ./requirements.txt .
COPY ./run_linter.sh .
# Install dependencies.
RUN pip install --upgrade pip
RUN pip install -r requirements.txt
WORKDIR app
ENTRYPOINT ["/setup/run_linter.sh"]
+5 -6
View File
@@ -2,9 +2,8 @@ git+https://github.com/tensorflow/docs
ipython
jupyter
nbconvert
black==25.1.0
pyupgrade==3.20.0
isort==6.0.1
flake8==7.3.0
nbqa==1.9.1
black==22.1.0
pyupgrade==2.31.0
isort==5.10.1
flake8==4.0.1
nbqa==1.2.3
+8 -18
View File
@@ -47,22 +47,12 @@ done
echo "Test mode: $is_test"
# Read in user-provided notebooks
notebooks=()
for arg in "$@"; do
if [[ $arg == *.ipynb ]]; then
notebooks+=("$arg")
fi
done
# Only check notebooks in test folders modified in this pull request.
# Note: Use process substitution to persist the data in the array
if [ ${#notebooks[@]} -eq 0 ]; then
echo "Checking for changed notebooks using git"
while read -r file || [ -n "$line" ]; do
notebooks+=("$file")
done < <(git diff --name-only main... | grep '\.ipynb$')
fi
notebooks=()
while read -r file || [ -n "$line" ]; do
notebooks+=("$file")
done < <(git diff --name-only main... | grep '\.ipynb$')
problematic_notebooks=()
if [ ${#notebooks[@]} -gt 0 ]; then
@@ -78,13 +68,13 @@ if [ ${#notebooks[@]} -gt 0 ]; then
if [ "$is_test" = true ]; then
echo "Running nbfmt..."
python3 -m tensorflow_docs.tools.nbfmt --test "$notebook"
python3 -m tensorflow_docs.tools.nbfmt --remove_outputs --test "$notebook"
NBFMT_RTN=$?
# echo "Running black..."
# python3 -m nbqa black "$notebook" --check
# BLACK_RTN=$?
echo "Running pyupgrade..."
python3 -m nbqa pyupgrade --exit-zero-even-if-changed "$notebook"
python3 -m nbqa pyupgrade "$notebook"
PYUPGRADE_RTN=$?
echo "Running isort..."
python3 -m nbqa isort "$notebook" --check
@@ -97,13 +87,13 @@ if [ ${#notebooks[@]} -gt 0 ]; then
python3 -m nbqa black "$notebook"
BLACK_RTN=$?
echo "Running pyupgrade..."
python3 -m nbqa pyupgrade --exit-zero-even-if-changed "$notebook"
python3 -m nbqa pyupgrade "$notebook"
PYUPGRADE_RTN=$?
echo "Running isort..."
python3 -m nbqa isort "$notebook"
ISORT_RTN=$?
echo "Running nbfmt..."
python3 -m tensorflow_docs.tools.nbfmt "$notebook"
python3 -m tensorflow_docs.tools.nbfmt --remove_outputs "$notebook"
NBFMT_RTN=$?
echo "Running flake8..."
python3 -m nbqa flake8 "$notebook" --show-source --extend-ignore=W391,E501,F821,E402,F404,W503,E203,E722,W293,W291
+5 -3
View File
@@ -44,10 +44,12 @@ Finally, run this code block to check for errors. Each step will attempt to
automatically fix any issues. If the fixes can't be performed automatically,
then you will need to manually address them before submitting your PR.
Note: For official, only submit one notebook per PR.
```shell
docker run -v ${PWD}:/setup/app gcr.io/cloud-devrel-public-resources/notebook_linter:latest your_notebook
nbqa black "$notebook"
nbqa pyupgrade "$notebook"
nbqa isort "$notebook"
python3 -m tensorflow_docs.tools.nbfmt --remove_outputs "$notebook"
nbqa flake8 "$notebook" --extend-ignore=W391,E501,F821,E402,F404,W503,E203,E722,W293,W291
```
## Code Reviews
+11 -162
View File
@@ -1,176 +1,25 @@
# ![Google Cloud](https://avatars.githubusercontent.com/u/2810941?s=60&v=4) Google Cloud Vertex AI Samples
# Google Cloud Vertex AI Samples
This repository contains notebooks, code samples, sample apps, and other resources that demonstrate how to use, develop and manage machine learning and generative AI workflows using Google Cloud Vertex AI.
[![License](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](LICENSE)
Welcome to the Google Cloud [Vertex AI](https://cloud.google.com/vertex-ai/docs/) sample repository.
## Overview
[Vertex AI](https://cloud.google.com/vertex-ai) is a fully-managed, unified AI development platform for building and using generative AI. This repository is designed to help you get started with Vertex AI. Whether you're new to Vertex AI or an experienced ML practitioner, you'll find valuable resources here.
The repository contains [Notebooks](https://github.com/GoogleCloudPlatform/vertex-ai-samples/tree/master/notebooks) and [Community Content](https://github.com/GoogleCloudPlatform/vertex-ai-samples/tree/master/community-content) that demonstrate how to develop and manage ML workflows using Google Cloud Vertex AI.
For more Vertex AI Generative AI notebook samples, please visit the Vertex AI [Generative AI](https://github.com/GoogleCloudPlatform/generative-ai) GitHub repository.
## Contributing
## Explore, learn and contribute
Contributions welcome! See the [Contributing Guide](https://github.com/GoogleCloudPlatform/vertex-ai-samples/blob/master/CONTRIBUTING.md).
You can explore, learn, and contribute to this repository to unleash the full potential of machine learning on Vertex AI!
## Getting help
### Explore and learn
Explore this repository, follow the links in the header section of each of the notebooks to -
![Colab](https://cloud.google.com/ml-engine/images/colab-logo-32px.png) Open and run the notebook in [Colab](https://colab.google/)\
![Colab Enterprise](https://cloud.google.com/ml-engine/images/colab-enterprise-logo-32px.png) Open and run the notebook in [Colab Enterprise](https://cloud.google.com/colab/docs/introduction)\
![Workbench](https://lh3.googleusercontent.com/UiNooY4LUgW_oTvpsNhPpQzsstV5W8F7rYgxgGBD85cWJoLmrOzhVs_ksK_vgx40SHs7jCqkTkCk=e14-rj-sc0xffffff-h130-w32) Open and run the notebook in [Vertex AI Workbench](https://cloud.google.com/vertex-ai/docs/workbench/introduction)\
![Github](https://cloud.google.com/ml-engine/images/github-logo-32px.png) View the notebook on Github
### Contribute
See the [Contributing Guide](https://github.com/GoogleCloudPlatform/vertex-ai-samples/blob/master/CONTRIBUTING.md).
## Get started
To get started using Vertex AI, you must have a Google Cloud project.
- If you don't have a Google Cloud project, you can learn and build on GCP for free using [Free Trail](https://cloud.google.com/free).
- Once you have a Google Cloud project, you can learn more about [setting up a project and a development environment](https://cloud.google.com/vertex-ai/docs/start/cloud-environment).
## Repository structure
```bash
├── notebooks
│ ├── official - Notebooks demonstrating use of each Vertex AI service
│ │ ├── automl
│ │ ├── custom
│ │ ├── ...
│ ├── community - Notebooks contributed by the community
│ │ ├── model_garden
│ │ ├── ...
├── community-content - Sample code and tutorials contributed by the community
```
## Examples
<!-- markdownlint-disable MD033 -->
<table>
<tr>
<th style="text-align: center;">Category</th>
<th style="text-align: center;">Product</th>
<th style="text-align: center;">Description</th>
</tr>
<tr>
<td>Model</td>
<td>
<a href="notebooks/community/model_garden"><code>Model Garden/</code></a>
</td>
<td>
Curated collection of first-party, open-source, and third-party models available on Vertex AI including Gemini, Gemma, Llama 3, Claude 3 and many more.
</td>
</tr>
<tr>
<td>Data</td>
<td>
<a href="notebooks/official/feature_store"><code>Feature Store/</code></a>
</td>
<td>
Set up and manage online serving using Vertex AI Feature Store.
</td>
</tr>
<tr>
<td></td>
<td>
<a href="notebooks/official/datasets"><code>datasets/</code></a>
</td>
<td>
Use BigQuery and Data Labeling service with Vertex AI.
</td>
</tr>
<tr>
<td>Model development</td>
<td>
<a href="notebooks/official/automl"><code>automl/</code></a>
</td>
<td>
Train and make predictions on AutoML models
</td>
</tr>
<tr>
<td></td>
<td>
<a href="notebooks/official/custom"><code>custom/</code></a>
</td>
<td>
Create, deploy and serve custom models on Vertex AI
</td>
</tr>
<tr>
<td></td>
<td>
<a href="notebooks/official/ray_on_vertex_ai"><code>ray_on_vertex_ai/</code></a>
</td>
<td>
Use Colab Enterprise and Vertex AI SDK for Python to connect to the Ray Cluster.
</td>
</tr>
<tr>
<td>Deploy and use</td>
<td>
<a href="notebooks/official/prediction"><code>prediction/</code></a>
</td>
<td>
Build, train and deploy models using prebuilt containers for custom training and prediction.
</td>
</tr>
<tr>
<td></td>
<td>
<a href="notebooks/official/model_registry"><code>model_registry/</code></a>
</td>
<td>
Use Model Registry to create and register a model.
</td>
</tr>
<tr>
<td></td>
<td>
<a href="notebooks/official/explainable_ai"><code>Explainable AI/</code></a>
</td>
<td>
Use Vertex Explainable AI's feature-based and example-based explanations to explain how or why a model produced a specific prediction.
</td>
</tr>
<tr>
<td></td>
<td>
<a href="notebooks/official/ml_metadata"><code>ml_metadata/</code></a>
</td>
<td>
Record the metadata and artifacts and query that metadata to help analyze, debug, and audit the performance of your ML system.
</td>
</tr>
<tr>
<td>Tools</td>
<td>
<a href="notebooks/official/pipelines"><code>Pipelines/</code></a>
</td>
<td>
Use `Vertex AI Pipelines` and `Google Cloud Pipeline Components` to build, tune, or deploy a custom model.
</td>
</tr>
</table>
<!-- markdownlint-enable MD033 -->
## Get help
Please use the [Issues page](https://github.com/GoogleCloudPlatform/vertex-ai-samples/issues) to provide feedback or submit a bug report.
Please use the [issues page](https://github.com/GoogleCloudPlatform/vertex-ai-samples/issues) to provide feedback or submit a bug report.
## Disclaimer
This is not an officially supported Google product. The code in this repository is for demonstrative purposes only.
## Feedback
## References
- [Vertex AI Jupyter Notebook tutorials](https://cloud.google.com/vertex-ai/docs/tutorials/jupyter-notebooks)
- Vertex AI [Generative AI](https://github.com/GoogleCloudPlatform/generative-ai) GitHub repository
- [Vertex AI documentaton](https://cloud.google.com/vertex-ai/docs)
Please feel free to fill out our [survey](https://bit.ly/vertex-ai-samples-survey) to give us feedback on the repo and its content.
-28
View File
@@ -1,33 +1,5 @@
* @vertex-ai-samples-contributors @GoogleCloudPlatform/cloudml-samples-owners
/tf_agents_bandits_movie_recommendation_with_kfp_and_vertex_sdk @yinghsienwu
/pytorch_pre_built_images_deployment @googleapis/vertex-prediction-team
/pytorch_text_classification_using_vertex_sdk_and_gcloud @RajeshThallam
/pytorch_text_classification_using_vertex_sdk_and_gcloud @RajeshThallam @ultrons
/sklearn_text_classification_from_script_using_vertex_sdk @maxhardt
/pluto_on_workbench @wkharold
/cpr-examples @samthrasher
/Train_tabular_models_with_many_frameworks_and_import_to_Vertex_AI_using_Pipelines @Ark-kun
/pipeline_components @Ark-kun
/pipeline_components/image_ml_model_training @lakeyk
/prediction_featurestore_integration @googleapis/vertex-prediction-team
/vertex_model_garden/model_oss/notebook_util @minwoo33park
/vertex_model_garden/model_oss/util @weigary
/vertex_model_garden/model_oss/diffusers @weigary
/vertex_model_garden/model_oss/keras @dstnluong-google
/vertex_model_garden/model_oss/transformers @dstnluong-google
/vertex_model_garden/model_oss/pic2word @jismailyan-google
/vertex_model_garden/model_oss/open_clip @lydhr
/vertex_model_garden/model_oss/movinet @KCFindstr
/vertex_model_garden/model_oss/data_converter @KCFindstr
/vertex_model_garden/model_oss/peft @weigary
/vertex_model_garden/model_oss/peft/templates @rayandasoriya
/vertex_model_garden/model_oss/lm-evaluation-harness @kathyyu-google
/vertex_model_garden/model_oss/tfvision @dstnluong-google
/vertex_model_garden/model_oss/fvlm @minwoo33park
/vertex_model_garden/model_oss/imagebind @kathyyu-google
/vertex_model_garden/model_oss/llava @py4
/vertex_model_garden/model_oss/vllm @kathyyu-google
/vertex_model_garden/benchmarking_reports @lavraicse
/vertex_model_garden/model_oss/autogluon @lavraicse
/vertex_distributed_training/a3mega/llama-3-8b-nemo-pretraining @mstyer-google @erwinh85 @mchrestkha
@@ -1,83 +0,0 @@
name: Train tabular classification logistic regression model using Scikit learn pipeline
metadata:
annotations:
author: Alexey Volkov <alexey.volkov@ark-kun.com>
canonical_location: https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/samples/Google_Cloud_Vertex_AI/Train_tabular_classification_logistic_regression_model_using_Scikit_learn_and_import_to_Vertex_AI/pipeline.component.yaml
sdk: https://cloud-pipelines.net/pipeline-editor/
implementation:
graph:
tasks:
Download from GCS:
componentRef:
digest: 4175c9ff143cb8cc75d05451c0a0ebdf5a0d6d020816e29f5e9cefbb7d56f241
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/27a5ea25e849c9e8c0cb6ed65518bc3ece259aaf/components/google-cloud/storage/download/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
GCS path: gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv
annotations:
editor.position: '{"x":40,"y":40,"width":180,"height":40}'
Select columns using Pandas on CSV data:
componentRef:
digest: 9b9500f461c1d04f1e48992de9138db14a6800f23649d73048673d5ea6dc56ad
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/8c78aae096806cff3bc331a40566f42f5c3e9d4b/components/pandas/Select_columns/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: Data
taskId: Download from GCS
column_names: '["tips", "trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"]'
annotations:
editor.position: '{"x":40,"y":140,"width":180,"height":54}'
Fill all missing values using Pandas on CSV data:
componentRef:
digest: a1b0c29a4615f2e3652aa5d31b9255fa15700e146627c755f8fc172f82e71af7
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/23405971f5f16a41b16c343129b893c52e4d1d48/components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Select columns using Pandas on CSV data
type: CSV
replacement_value: '0'
annotations:
editor.position: '{"x":40,"y":250,"width":180,"height":54}'
Binarize column using Pandas on CSV data:
componentRef:
digest: d699afd4d7cae862708717cc160f4394ed0c04e536e9515923ef1e8865f01d44
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/1e2558325f4c708aca75827c8acc13d230ee7e9f/components/pandas/Binarize_column/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Fill all missing values using Pandas on CSV data
type: CSV
column_name: tips
predicate: '> 0'
new_column_name: class
annotations:
editor.position: '{"x":40,"y":380,"width":180,"height":54}'
Train logistic regression model using scikit learn from CSV:
componentRef:
digest: a864625a822e4b1c8ef6fe4ae1454fd90f15438f70a6712bb4c30e0dda4d35b7
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/cb44b75c9c062fcc40c2b905b2024b4493dbc62b/components/ML_frameworks/Scikit_learn/Train_logistic_regression_model/from_CSV/component.yaml
arguments:
dataset:
taskOutput:
outputName: transformed_table
taskId: Binarize column using Pandas on CSV data
type: CSV
label_column_name: class
annotations:
editor.position: '{"x":40,"y":510,"width":180,"height":70}'
Upload Scikit learn pickle model to Google Cloud Vertex AI:
componentRef:
digest: 81c91c8d7d21ec97e0872f669d68bd89edea87279d703685db54aa94743bebcd
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/c6a8b67d1ada2cc17665c99ff6b410df588bee28/components/google-cloud/Vertex_AI/Models/Upload_Scikit-learn_pickle_model/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
model:
taskOutput:
outputName: model
taskId: Train logistic regression model using scikit learn from CSV
type: ScikitLearnPickleModel
annotations:
editor.position: '{"x":40,"y":660,"width":180,"height":70}'
outputValues: {}
@@ -1,73 +0,0 @@
# python3 -m pip install "kfp<2.0.0" "google-cloud-aiplatform>=1.16.0" --upgrade --quiet
from kfp import components
# %% Loading components
download_from_gcs_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/storage/download/component.yaml")
select_columns_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Select_columns/in_CSV_format/component.yaml")
fill_all_missing_values_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml")
binarize_column_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Binarize_column/in_CSV_format/component.yaml")
train_logistic_regression_model_using_scikit_learn_from_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/1f5cf6e06409b704064b2086c0a705e4e6b4fcde/community-content/pipeline_components/ML_frameworks/Scikit_learn/Train_logistic_regression_model/from_CSV/component.yaml")
upload_Scikit_learn_pickle_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_Scikit-learn_pickle_model/component.yaml")
deploy_model_to_endpoint_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Deploy_to_endpoint/component.yaml")
# %% Pipeline definition
def train_tabular_classification_logistic_regression_model_using_Scikit_learn_pipeline():
dataset_gcs_uri = "gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv"
feature_columns = ["trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"] # Excluded "trip_total"
label_column = "tips"
# Deploying the model might incur additional costs over time
deploy_model = False
classification_label_column = "class"
all_columns = [label_column] + feature_columns
training_data = download_from_gcs_op(
gcs_path=dataset_gcs_uri
).outputs["Data"]
training_data = select_columns_using_Pandas_on_CSV_data_op(
table=training_data,
column_names=all_columns,
).outputs["transformed_table"]
# Cleaning the NaN values.
training_data = fill_all_missing_values_using_Pandas_on_CSV_data_op(
table=training_data,
replacement_value="0",
#replacement_type_name="float",
).outputs["transformed_table"]
classification_training_data = binarize_column_using_Pandas_on_CSV_data_op(
table=training_data,
column_name=label_column,
predicate="> 0",
new_column_name=classification_label_column,
).outputs["transformed_table"]
model = train_logistic_regression_model_using_scikit_learn_from_CSV_op(
dataset=classification_training_data,
label_column_name=classification_label_column,
# Optional:
#penalty="l2",
#solver="lbfgs",
#max_iterations=100,
#multi_class_mode="auto",
#random_seed=0,
).outputs["model"]
vertex_model_name = upload_Scikit_learn_pickle_model_to_Google_Cloud_Vertex_AI_op(
model=model,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
sklearn_vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=vertex_model_name,
).outputs["endpoint_name"]
pipeline_func = train_tabular_classification_logistic_regression_model_using_Scikit_learn_pipeline
# %% Pipeline submission
if __name__ == '__main__':
from google.cloud import aiplatform
aiplatform.PipelineJob.from_pipeline_func(pipeline_func=pipeline_func).submit()
@@ -1,114 +0,0 @@
name: Train tabular classification model using PyTorch pipeline
metadata:
annotations:
author: Alexey Volkov <alexey.volkov@ark-kun.com>
canonical_location: https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/samples/Google_Cloud_Vertex_AI/Train_tabular_classification_model_using_PyTorch_and_import_to_Vertex_AI/pipeline.component.yaml
sdk: https://cloud-pipelines.net/pipeline-editor/
implementation:
graph:
tasks:
Download from GCS:
componentRef:
digest: 4175c9ff143cb8cc75d05451c0a0ebdf5a0d6d020816e29f5e9cefbb7d56f241
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/27a5ea25e849c9e8c0cb6ed65518bc3ece259aaf/components/google-cloud/storage/download/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
GCS path: gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv
annotations:
editor.position: '{"x":240,"y":40,"width":180,"height":40}'
Select columns using Pandas on CSV data:
componentRef:
digest: 9b9500f461c1d04f1e48992de9138db14a6800f23649d73048673d5ea6dc56ad
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/8c78aae096806cff3bc331a40566f42f5c3e9d4b/components/pandas/Select_columns/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: Data
taskId: Download from GCS
column_names: '["tips", "trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"]'
annotations:
editor.position: '{"x":240,"y":140,"width":180,"height":54}'
Fill all missing values using Pandas on CSV data:
componentRef:
digest: a1b0c29a4615f2e3652aa5d31b9255fa15700e146627c755f8fc172f82e71af7
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/23405971f5f16a41b16c343129b893c52e4d1d48/components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Select columns using Pandas on CSV data
type: CSV
replacement_value: '0'
annotations:
editor.position: '{"x":240,"y":250,"width":180,"height":54}'
Create fully connected pytorch network:
componentRef:
digest: d03d8248fd358a0275ec33568ee7dd7dce576cc112b09dfafe2651e4d97e04a9
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/1a2ef3eeb77bc278f33cad0dd29008ea2431e191/components/PyTorch/Create_fully_connected_network/component.yaml
arguments:
input_size: '7'
hidden_layer_sizes: '[10]'
activation_name: elu
output_activation_name: sigmoid
annotations:
editor.position: '{"x":40,"y":360,"width":180,"height":54}'
Binarize column using Pandas on CSV data:
componentRef:
digest: d699afd4d7cae862708717cc160f4394ed0c04e536e9515923ef1e8865f01d44
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/1e2558325f4c708aca75827c8acc13d230ee7e9f/components/pandas/Binarize_column/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Fill all missing values using Pandas on CSV data
type: CSV
column_name: tips
predicate: ' > 0'
new_column_name: class
annotations:
editor.position: '{"x":240,"y":360,"width":180,"height":54}'
Train pytorch model from csv:
componentRef:
digest: 40f3185eb61e9727f41a4e0c05dd3d3b44bd802aa0f378cfc31756560033949a
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/d8c4cf5e6403bc65bcf8d606e6baf87e2528a3dc/components/PyTorch/Train_PyTorch_model/from_CSV/component.yaml
arguments:
model:
taskOutput:
outputName: model
taskId: Create fully connected pytorch network
type: PyTorchScriptModule
training_data:
taskOutput:
outputName: transformed_table
taskId: Binarize column using Pandas on CSV data
type: CSV
label_column_name: class
loss_function_name: binary_cross_entropy
annotations:
editor.position: '{"x":240,"y":490,"width":180,"height":40}'
Create PyTorch Model Archive with base handler:
componentRef:
digest: 8298b5ee1b0f0879f893add4cf352c8dec7cf9e21bb9db134c91a2d046cdb0ec
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/46d51383e6554b7f3ab4fd8cf614d8c2b422fb22/components/PyTorch/Create_PyTorch_Model_Archive/with_base_handler/component.yaml
arguments:
Model:
taskOutput:
outputName: trained_model
taskId: Train pytorch model from csv
type: PyTorchScriptModule
Model name: model
Model version: '1.0'
annotations:
editor.position: '{"x":240,"y":590,"width":180,"height":54}'
Upload PyTorch model archive to Google Cloud Vertex AI:
componentRef:
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url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/c6a8b67d1ada2cc17665c99ff6b410df588bee28/components/google-cloud/Vertex_AI/Models/Upload_PyTorch_model_archive/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
model_archive:
taskOutput:
outputName: Model archive
taskId: Create PyTorch Model Archive with base handler
type: PyTorchModelArchive
annotations:
editor.position: '{"x":240,"y":720,"width":180,"height":70}'
outputValues: {}
@@ -1,95 +0,0 @@
# python3 -m pip install "kfp<2.0.0" "google-cloud-aiplatform>=1.16.0" --upgrade --quiet
from kfp import components
# %% Loading components
download_from_gcs_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/storage/download/component.yaml")
select_columns_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Select_columns/in_CSV_format/component.yaml")
fill_all_missing_values_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml")
binarize_column_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Binarize_column/in_CSV_format/component.yaml")
create_fully_connected_pytorch_network_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/PyTorch/Create_fully_connected_network/component.yaml")
train_pytorch_model_from_csv_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/PyTorch/Train_PyTorch_model/from_CSV/component.yaml")
create_pytorch_model_archive_with_base_handler_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/PyTorch/Create_PyTorch_Model_Archive/with_base_handler/component.yaml")
upload_PyTorch_model_archive_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_PyTorch_model_archive/component.yaml")
deploy_model_to_endpoint_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Deploy_to_endpoint/component.yaml")
# %% Pipeline definition
def train_tabular_classification_model_using_PyTorch_pipeline():
dataset_gcs_uri = "gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv"
feature_columns = ["trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"] # Excluded "trip_total"
label_column = "tips"
# Deploying the model might incur additional costs over time
deploy_model = False
classification_label_column = "class"
all_columns = [label_column] + feature_columns
training_data = download_from_gcs_op(
gcs_path=dataset_gcs_uri
).outputs["Data"]
training_data = select_columns_using_Pandas_on_CSV_data_op(
table=training_data,
column_names=all_columns,
).outputs["transformed_table"]
# Cleaning the NaN values.
training_data = fill_all_missing_values_using_Pandas_on_CSV_data_op(
table=training_data,
replacement_value="0",
#replacement_type_name="float",
).outputs["transformed_table"]
classification_training_data = binarize_column_using_Pandas_on_CSV_data_op(
table=training_data,
column_name=label_column,
predicate=" > 0",
new_column_name=classification_label_column,
).outputs["transformed_table"]
network = create_fully_connected_pytorch_network_op(
input_size=len(feature_columns),
# Optional:
hidden_layer_sizes=[10],
activation_name="elu",
output_activation_name="sigmoid",
# output_size=1,
).outputs["model"]
model = train_pytorch_model_from_csv_op(
model=network,
training_data=classification_training_data,
label_column_name=classification_label_column,
loss_function_name="binary_cross_entropy",
# Optional:
#number_of_epochs=1,
#learning_rate=0.1,
#optimizer_name="Adadelta",
#optimizer_parameters={},
#batch_size=32,
#batch_log_interval=100,
#random_seed=0,
).outputs["trained_model"]
model_archive = create_pytorch_model_archive_with_base_handler_op(
model=model,
# Optional:
# model_name="model",
# model_version="1.0",
).outputs["Model archive"]
vertex_model_name = upload_PyTorch_model_archive_to_Google_Cloud_Vertex_AI_op(
model_archive=model_archive,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=vertex_model_name,
).outputs["endpoint_name"]
pipeline_func=train_tabular_classification_model_using_PyTorch_pipeline
# %% Pipeline submission
if __name__ == '__main__':
from google.cloud import aiplatform
aiplatform.PipelineJob.from_pipeline_func(pipeline_func=pipeline_func).submit()
@@ -1,132 +0,0 @@
name: Train tabular classification model using TensorFlow pipeline
metadata:
annotations:
author: Alexey Volkov <alexey.volkov@ark-kun.com>
canonical_location: https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/samples/Google_Cloud_Vertex_AI/Train_tabular_classification_model_using_TensorFlow_and_import_to_Vertex_AI/pipeline.component.yaml
sdk: https://cloud-pipelines.net/pipeline-editor/
implementation:
graph:
tasks:
Download from GCS:
componentRef:
digest: 4175c9ff143cb8cc75d05451c0a0ebdf5a0d6d020816e29f5e9cefbb7d56f241
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/27a5ea25e849c9e8c0cb6ed65518bc3ece259aaf/components/google-cloud/storage/download/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
GCS path: gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv
annotations:
editor.position: '{"x":40,"y":40,"width":180,"height":40}'
Select columns using Pandas on CSV data:
componentRef:
digest: 9b9500f461c1d04f1e48992de9138db14a6800f23649d73048673d5ea6dc56ad
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/8c78aae096806cff3bc331a40566f42f5c3e9d4b/components/pandas/Select_columns/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: Data
taskId: Download from GCS
column_names: '["tips", "trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"]'
annotations:
editor.position: '{"x":40,"y":140,"width":180,"height":54}'
Fill all missing values using Pandas on CSV data:
componentRef:
digest: a1b0c29a4615f2e3652aa5d31b9255fa15700e146627c755f8fc172f82e71af7
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/23405971f5f16a41b16c343129b893c52e4d1d48/components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Select columns using Pandas on CSV data
type: CSV
replacement_value: '0'
annotations:
editor.position: '{"x":40,"y":250,"width":180,"height":54}'
Binarize column using Pandas on CSV data:
componentRef:
digest: d699afd4d7cae862708717cc160f4394ed0c04e536e9515923ef1e8865f01d44
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/1e2558325f4c708aca75827c8acc13d230ee7e9f/components/pandas/Binarize_column/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Fill all missing values using Pandas on CSV data
type: CSV
column_name: tips
predicate: ' > 0'
new_column_name: class
annotations:
editor.position: '{"x":40,"y":370,"width":180,"height":54}'
Split rows into subsets:
componentRef:
digest: a609c3c9196484290f24a1174955f95b27f07a7b458aa5cb8cde28866cb2cb46
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/daae5a4abaa35e44501818b1534ed7827d7da073/components/dataset_manipulation/Split_rows_into_subsets/in_CSV/component.yaml
arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Binarize column using Pandas on CSV data
type: CSV
fraction_1: '0.8'
annotations:
editor.position: '{"x":170,"y":500,"width":180,"height":40}'
Create fully connected tensorflow network:
componentRef:
digest: bfcafbc5ce711b1f69cabf1338212d10d50136a73db9f9f7c984de7b80b4bfb0
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/9ca0f9eecf5f896f65b8538bbd809747052617d1/components/tensorflow/Create_fully_connected_network/component.yaml
arguments:
input_size: '7'
hidden_layer_sizes: '[10]'
activation_name: elu
output_activation_name: sigmoid
annotations:
editor.position: '{"x":370,"y":500,"width":180,"height":54}'
Train model using Keras on CSV:
componentRef:
digest: 42ae60c889034dbad74815653e95b4f7d576b5f47f803173e8679c7b54984609
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/c504a4010348c50eaaf6d4337586ccc008f4dcef/components/tensorflow/Train_model_using_Keras/on_CSV/component.yaml
arguments:
training_data:
taskOutput:
outputName: split_1
taskId: Split rows into subsets
type: CSV
model:
taskOutput:
outputName: model
taskId: Create fully connected tensorflow network
type: TensorflowSavedModel
label_column_name: class
loss_function_name: binary_crossentropy
number_of_epochs: '10'
annotations:
editor.position: '{"x":40,"y":620,"width":180,"height":54}'
Upload Tensorflow model to Google Cloud Vertex AI:
componentRef:
digest: 2e45263ff640b1a688e359b6936e27a81b2407749a84f340af2aa5547e0cb92c
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/c6a8b67d1ada2cc17665c99ff6b410df588bee28/components/google-cloud/Vertex_AI/Models/Upload_Tensorflow_model/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
model:
taskOutput:
outputName: trained_model
taskId: Train model using Keras on CSV
type: TensorflowSavedModel
annotations:
editor.position: '{"x":40,"y":750,"width":180,"height":54}'
Predict with TensorFlow model on CSV data:
componentRef:
digest: 921bb1563e93a78233b8acceab87055b9154ccf5595d056028cf0396ca224cd4
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/59c759ce6f543184e30db6817d2a703879bc0f39/components/tensorflow/Predict/on_CSV/component.yaml
arguments:
dataset:
taskOutput:
outputName: split_2
taskId: Split rows into subsets
type: CSV
model:
taskOutput:
outputName: trained_model
taskId: Train model using Keras on CSV
type: TensorflowSavedModel
label_column_name: class
annotations:
editor.position: '{"x":240,"y":750,"width":180,"height":54}'
outputValues: {}
@@ -1,106 +0,0 @@
# python3 -m pip install "kfp<2.0.0" "google-cloud-aiplatform>=1.16.0" --upgrade --quiet
from kfp import components
# %% Loading components
download_from_gcs_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/storage/download/component.yaml")
select_columns_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Select_columns/in_CSV_format/component.yaml")
fill_all_missing_values_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml")
binarize_column_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Binarize_column/in_CSV_format/component.yaml")
split_rows_into_subsets_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/dataset_manipulation/Split_rows_into_subsets/in_CSV/component.yaml")
create_fully_connected_tensorflow_network_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/tensorflow/Create_fully_connected_network/component.yaml")
train_model_using_Keras_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/tensorflow/Train_model_using_Keras/on_CSV/component.yaml")
predict_with_TensorFlow_model_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/tensorflow/Predict/on_CSV/component.yaml")
upload_Tensorflow_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_Tensorflow_model/component.yaml")
deploy_model_to_endpoint_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Deploy_to_endpoint/component.yaml")
# %% Pipeline definition
def train_tabular_classification_model_using_TensorFlow_pipeline():
dataset_gcs_uri = "gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv"
feature_columns = ["trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"] # Excluded "trip_total"
label_column = "tips"
training_set_fraction = 0.8
# Deploying the model might incur additional costs over time
deploy_model = False
classification_label_column = "class"
all_columns = [label_column] + feature_columns
dataset = download_from_gcs_op(
gcs_path=dataset_gcs_uri
).outputs["Data"]
dataset = select_columns_using_Pandas_on_CSV_data_op(
table=dataset,
column_names=all_columns,
).outputs["transformed_table"]
dataset = fill_all_missing_values_using_Pandas_on_CSV_data_op(
table=dataset,
replacement_value="0",
# # Optional:
# column_names=None, # =[...]
).outputs["transformed_table"]
classification_dataset = binarize_column_using_Pandas_on_CSV_data_op(
table=dataset,
column_name=label_column,
predicate=" > 0",
new_column_name=classification_label_column,
).outputs["transformed_table"]
split_task = split_rows_into_subsets_op(
table=classification_dataset,
fraction_1=training_set_fraction,
)
classification_training_data = split_task.outputs["split_1"]
classification_testing_data = split_task.outputs["split_2"]
network = create_fully_connected_tensorflow_network_op(
input_size=len(feature_columns),
# Optional:
hidden_layer_sizes=[10],
activation_name="elu",
output_activation_name="sigmoid",
# output_size=1,
).outputs["model"]
model = train_model_using_Keras_on_CSV_op(
training_data=classification_training_data,
model=network,
label_column_name=classification_label_column,
# Optional:
loss_function_name="binary_crossentropy",
number_of_epochs=10,
#learning_rate=0.1,
#optimizer_name="Adadelta",
#optimizer_parameters={},
#batch_size=32,
#metric_names=["mean_absolute_error"],
#random_seed=0,
).outputs["trained_model"]
predictions = predict_with_TensorFlow_model_on_CSV_data_op(
dataset=classification_testing_data,
model=model,
# label_column_name needs to be set when doing prediction on a dataset that has labels
label_column_name=classification_label_column,
# Optional:
# batch_size=1000,
).outputs["predictions"]
vertex_model_name = upload_Tensorflow_model_to_Google_Cloud_Vertex_AI_op(
model=model,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=vertex_model_name,
).outputs["endpoint_name"]
pipeline_func = train_tabular_classification_model_using_TensorFlow_pipeline
# %% Pipeline submission
if __name__ == '__main__':
from google.cloud import aiplatform
aiplatform.PipelineJob.from_pipeline_func(pipeline_func=pipeline_func).submit()
@@ -1,115 +0,0 @@
name: Train tabular classification model using XGBoost pipeline
metadata:
annotations:
author: Alexey Volkov <alexey.volkov@ark-kun.com>
canonical_location: https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/samples/Google_Cloud_Vertex_AI/Train_tabular_classification_model_using_XGBoost_and_import_to_Vertex_AI/pipeline.component.yaml
sdk: https://cloud-pipelines.net/pipeline-editor/
implementation:
graph:
tasks:
Download from GCS:
componentRef:
digest: 4175c9ff143cb8cc75d05451c0a0ebdf5a0d6d020816e29f5e9cefbb7d56f241
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/27a5ea25e849c9e8c0cb6ed65518bc3ece259aaf/components/google-cloud/storage/download/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
GCS path: gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv
annotations:
editor.position: '{"x":40,"y":40,"width":180,"height":40}'
Select columns using Pandas on CSV data:
componentRef:
digest: 9b9500f461c1d04f1e48992de9138db14a6800f23649d73048673d5ea6dc56ad
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/8c78aae096806cff3bc331a40566f42f5c3e9d4b/components/pandas/Select_columns/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: Data
taskId: Download from GCS
column_names: '["tips", "trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"]'
annotations:
editor.position: '{"x":40,"y":140,"width":180,"height":54}'
Fill all missing values using Pandas on CSV data:
componentRef:
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arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Select columns using Pandas on CSV data
type: CSV
replacement_value: '0'
annotations:
editor.position: '{"x":40,"y":250,"width":180,"height":54}'
Binarize column using Pandas on CSV data:
componentRef:
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url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/1e2558325f4c708aca75827c8acc13d230ee7e9f/components/pandas/Binarize_column/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Fill all missing values using Pandas on CSV data
type: CSV
column_name: tips
predicate: '> 0'
new_column_name: class
annotations:
editor.position: '{"x":40,"y":380,"width":180,"height":54}'
Split rows into subsets:
componentRef:
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arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Binarize column using Pandas on CSV data
type: CSV
fraction_1: '0.8'
annotations:
editor.position: '{"x":170,"y":510,"width":180,"height":40}'
Train XGBoost model on CSV:
componentRef:
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url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/58d3a47f904f32a64af8403330ba7e2134cae46d/components/XGBoost/Train/component.yaml
arguments:
training_data:
taskOutput:
outputName: split_1
taskId: Split rows into subsets
type: CSV
label_column_name: class
objective: binary:logistic
annotations:
editor.position: '{"x":40,"y":630,"width":180,"height":40}'
Upload XGBoost model to Google Cloud Vertex AI:
componentRef:
digest: 5a5a273c403670743820986c03a4175b7cb4595a556524fefcce403656286977
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/c6a8b67d1ada2cc17665c99ff6b410df588bee28/components/google-cloud/Vertex_AI/Models/Upload_XGBoost_model/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
model:
taskOutput:
outputName: model
taskId: Train XGBoost model on CSV
type: XGBoostModel
annotations:
editor.position: '{"x":40,"y":750,"width":180,"height":54}'
Xgboost predict on CSV:
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url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/4694ec97baccf59284c2a1db4aa2250c22291eab/components/XGBoost/Predict/component.yaml
arguments:
data:
taskOutput:
outputName: split_2
taskId: Split rows into subsets
type: CSV
model:
taskOutput:
outputName: model
taskId: Train XGBoost model on CSV
type: XGBoostModel
label_column_name: class
annotations:
editor.position: '{"x":240,"y":750,"width":180,"height":40}'
outputValues: {}
@@ -1,94 +0,0 @@
# python3 -m pip install "kfp<2.0.0" "google-cloud-aiplatform>=1.16.0" --upgrade --quiet
from kfp import components
# %% Loading components
download_from_gcs_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/storage/download/component.yaml")
select_columns_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Select_columns/in_CSV_format/component.yaml")
fill_all_missing_values_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml")
binarize_column_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Binarize_column/in_CSV_format/component.yaml")
split_rows_into_subsets_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/dataset_manipulation/Split_rows_into_subsets/in_CSV/component.yaml")
train_XGBoost_model_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/XGBoost/Train/component.yaml")
xgboost_predict_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/XGBoost/Predict/component.yaml")
upload_XGBoost_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/d5c9918850a6cc70004c4269dae066cfe2e664eb/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_XGBoost_model/component.yaml")
deploy_model_to_endpoint_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Deploy_to_endpoint/component.yaml")
# %% Pipeline definition
def train_tabular_classification_model_using_XGBoost_pipeline():
dataset_gcs_uri = "gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv"
feature_columns = ["trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"] # Excluded "trip_total"
label_column = "tips"
training_set_fraction = 0.8
# Deploying the model might incur additional costs over time
deploy_model = False
classification_label_column = "class"
all_columns = [label_column] + feature_columns
dataset = download_from_gcs_op(
gcs_path=dataset_gcs_uri
).outputs["Data"]
dataset = select_columns_using_Pandas_on_CSV_data_op(
table=dataset,
column_names=all_columns,
).outputs["transformed_table"]
dataset = fill_all_missing_values_using_Pandas_on_CSV_data_op(
table=dataset,
replacement_value="0",
# # Optional:
# column_names=None, # =[...]
).outputs["transformed_table"]
classification_dataset = binarize_column_using_Pandas_on_CSV_data_op(
table=dataset,
column_name=label_column,
predicate="> 0",
new_column_name=classification_label_column,
).outputs["transformed_table"]
split_task = split_rows_into_subsets_op(
table=classification_dataset,
fraction_1=training_set_fraction,
)
classification_training_data = split_task.outputs["split_1"]
classification_testing_data = split_task.outputs["split_2"]
model = train_XGBoost_model_on_CSV_op(
training_data=classification_training_data,
label_column_name=classification_label_column,
objective="binary:logistic",
# Optional:
#starting_model=None,
#num_iterations=10,
#booster_params={},
#booster="gbtree",
#learning_rate=0.3,
#min_split_loss=0,
#max_depth=6,
).outputs["model"]
# Predicting on the testing data
predictions = xgboost_predict_on_CSV_op(
data=classification_testing_data,
model=model,
# label_column needs to be set when doing prediction on a dataset that has labels
label_column_name=classification_label_column,
).outputs["predictions"]
vertex_model_name = upload_XGBoost_model_to_Google_Cloud_Vertex_AI_op(
model=model,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=vertex_model_name,
).outputs["endpoint_name"]
pipeline_func = train_tabular_classification_model_using_XGBoost_pipeline
# %% Pipeline submission
if __name__ == '__main__':
from google.cloud import aiplatform
aiplatform.PipelineJob.from_pipeline_func(pipeline_func=pipeline_func).submit()
@@ -1,257 +0,0 @@
name: Train tabular classification model using all frameworks pipeline
metadata:
annotations:
author: Alexey Volkov <alexey.volkov@ark-kun.com>
canonical_location: https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/samples/Google_Cloud_Vertex_AI/Train_tabular_classification_model_using_all_frameworks_and_import_to_Vertex_AI/pipeline.component.yaml
sdk: https://cloud-pipelines.net/pipeline-editor/
implementation:
graph:
tasks:
Download from GCS:
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arguments:
GCS path: gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv
annotations:
editor.position: '{"x":550,"y":40,"width":180,"height":40}'
Select columns using Pandas on CSV data:
componentRef:
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arguments:
table:
taskOutput:
outputName: Data
taskId: Download from GCS
column_names: '["tips", "trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"]'
annotations:
editor.position: '{"x":550,"y":140,"width":180,"height":54}'
Fill all missing values using Pandas on CSV data:
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arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Select columns using Pandas on CSV data
type: CSV
replacement_value: '0'
annotations:
editor.position: '{"x":550,"y":250,"width":180,"height":54}'
Binarize column using Pandas on CSV data:
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arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Fill all missing values using Pandas on CSV data
type: CSV
column_name: tips
predicate: ' > 0'
new_column_name: class
annotations:
editor.position: '{"x":550,"y":380,"width":180,"height":54}'
Split rows into subsets:
componentRef:
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arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Binarize column using Pandas on CSV data
type: CSV
fraction_1: '0.8'
annotations:
editor.position: '{"x":550,"y":490,"width":180,"height":40}'
Create fully connected pytorch network:
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arguments:
input_size: '7'
hidden_layer_sizes: '[10]'
activation_name: elu
output_activation_name: sigmoid
annotations:
editor.position: '{"x":380,"y":620,"width":180,"height":54}'
Create fully connected tensorflow network:
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arguments:
input_size: '7'
hidden_layer_sizes: '[10]'
activation_name: elu
output_activation_name: sigmoid
annotations:
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Train model using Keras on CSV:
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arguments:
training_data:
taskOutput:
outputName: split_1
taskId: Split rows into subsets
type: CSV
model:
taskOutput:
outputName: model
taskId: Create fully connected tensorflow network
type: TensorflowSavedModel
label_column_name: class
loss_function_name: binary_crossentropy
number_of_epochs: '10'
annotations:
editor.position: '{"x":40,"y":750,"width":180,"height":54}'
Train pytorch model from csv:
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arguments:
model:
taskOutput:
outputName: model
taskId: Create fully connected pytorch network
type: PyTorchScriptModule
training_data:
taskOutput:
outputName: split_1
taskId: Split rows into subsets
type: CSV
label_column_name: class
loss_function_name: binary_cross_entropy
annotations:
editor.position: '{"x":380,"y":750,"width":180,"height":40}'
Train XGBoost model on CSV:
componentRef:
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url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/58d3a47f904f32a64af8403330ba7e2134cae46d/components/XGBoost/Train/component.yaml
arguments:
training_data:
taskOutput:
outputName: split_1
taskId: Split rows into subsets
type: CSV
label_column_name: class
objective: binary:logistic
annotations:
editor.position: '{"x":720,"y":750,"width":180,"height":40}'
Train logistic regression model using scikit learn from CSV:
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arguments:
dataset:
taskOutput:
outputName: split_1
taskId: Split rows into subsets
type: CSV
label_column_name: class
annotations:
editor.position: '{"x":1030,"y":750,"width":180,"height":70}'
Predict with TensorFlow model on CSV data:
componentRef:
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arguments:
dataset:
taskOutput:
outputName: split_2
taskId: Split rows into subsets
type: CSV
model:
taskOutput:
outputName: trained_model
taskId: Train model using Keras on CSV
type: TensorflowSavedModel
label_column_name: class
annotations:
editor.position: '{"x":160,"y":880,"width":180,"height":54}'
Create PyTorch Model Archive with base handler:
componentRef:
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arguments:
Model:
taskOutput:
outputName: trained_model
taskId: Train pytorch model from csv
type: PyTorchScriptModule
Model name: model
Model version: '1.0'
annotations:
editor.position: '{"x":380,"y":880,"width":180,"height":54}'
Xgboost predict on CSV:
componentRef:
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arguments:
data:
taskOutput:
outputName: split_2
taskId: Split rows into subsets
type: CSV
model:
taskOutput:
outputName: model
taskId: Train XGBoost model on CSV
type: XGBoostModel
label_column_name: class
annotations:
editor.position: '{"x":810,"y":880,"width":180,"height":40}'
Upload Scikit learn pickle model to Google Cloud Vertex AI:
componentRef:
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url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/c6a8b67d1ada2cc17665c99ff6b410df588bee28/components/google-cloud/Vertex_AI/Models/Upload_Scikit-learn_pickle_model/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
model:
taskOutput:
outputName: model
taskId: Train logistic regression model using scikit learn from CSV
type: ScikitLearnPickleModel
annotations:
editor.position: '{"x":1030,"y":880,"width":180,"height":70}'
Upload Tensorflow model to Google Cloud Vertex AI:
componentRef:
digest: 2e45263ff640b1a688e359b6936e27a81b2407749a84f340af2aa5547e0cb92c
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/c6a8b67d1ada2cc17665c99ff6b410df588bee28/components/google-cloud/Vertex_AI/Models/Upload_Tensorflow_model/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
model:
taskOutput:
outputName: trained_model
taskId: Train model using Keras on CSV
type: TensorflowSavedModel
annotations:
editor.position: '{"x":40,"y":1010,"width":180,"height":54}'
Upload PyTorch model archive to Google Cloud Vertex AI:
componentRef:
digest: 4450212fae7b9001482aca7eb78b28413c205506eccf08a04e7754a8dfa99004
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/c6a8b67d1ada2cc17665c99ff6b410df588bee28/components/google-cloud/Vertex_AI/Models/Upload_PyTorch_model_archive/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
model_archive:
taskOutput:
outputName: Model archive
taskId: Create PyTorch Model Archive with base handler
type: PyTorchModelArchive
annotations:
editor.position: '{"x":380,"y":1010,"width":180,"height":70}'
Upload XGBoost model to Google Cloud Vertex AI:
componentRef:
digest: 5a5a273c403670743820986c03a4175b7cb4595a556524fefcce403656286977
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/c6a8b67d1ada2cc17665c99ff6b410df588bee28/components/google-cloud/Vertex_AI/Models/Upload_XGBoost_model/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
model:
taskOutput:
outputName: model
taskId: Train XGBoost model on CSV
type: XGBoostModel
annotations:
editor.position: '{"x":720,"y":1010,"width":180,"height":54}'
outputValues: {}
@@ -1,224 +0,0 @@
# python3 -m pip install "kfp<2.0.0" "google-cloud-aiplatform>=1.16.0" --upgrade --quiet
from kfp import components
# %% Loading components
download_from_gcs_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/storage/download/component.yaml")
select_columns_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Select_columns/in_CSV_format/component.yaml")
fill_all_missing_values_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml")
binarize_column_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Binarize_column/in_CSV_format/component.yaml")
split_rows_into_subsets_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/dataset_manipulation/Split_rows_into_subsets/in_CSV/component.yaml")
# TensorFlow
create_fully_connected_tensorflow_network_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/tensorflow/Create_fully_connected_network/component.yaml")
train_model_using_Keras_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/tensorflow/Train_model_using_Keras/on_CSV/component.yaml")
predict_with_TensorFlow_model_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/tensorflow/Predict/on_CSV/component.yaml")
upload_Tensorflow_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_Tensorflow_model/component.yaml")
# PyTorch
create_fully_connected_pytorch_network_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/PyTorch/Create_fully_connected_network/component.yaml")
train_pytorch_model_from_csv_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/PyTorch/Train_PyTorch_model/from_CSV/component.yaml")
create_pytorch_model_archive_with_base_handler_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/PyTorch/Create_PyTorch_Model_Archive/with_base_handler/component.yaml")
upload_PyTorch_model_archive_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_PyTorch_model_archive/component.yaml")
# XGBoost
train_XGBoost_model_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/XGBoost/Train/component.yaml")
xgboost_predict_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/XGBoost/Predict/component.yaml")
upload_XGBoost_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/d5c9918850a6cc70004c4269dae066cfe2e664eb/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_XGBoost_model/component.yaml")
# Scikit-learn
#train_linear_regression_model_using_scikit_learn_from_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/1f5cf6e06409b704064b2086c0a705e4e6b4fcde/community-content/pipeline_components/ML_frameworks/Scikit_learn/Train_linear_regression_model/from_CSV/component.yaml")
train_logistic_regression_model_using_scikit_learn_from_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/1f5cf6e06409b704064b2086c0a705e4e6b4fcde/community-content/pipeline_components/ML_frameworks/Scikit_learn/Train_logistic_regression_model/from_CSV/component.yaml")
upload_Scikit_learn_pickle_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_Scikit-learn_pickle_model/component.yaml")
# Vertex AI
deploy_model_to_endpoint_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Deploy_to_endpoint/component.yaml")
# %% Pipeline definition
def train_tabular_classification_model_using_all_frameworks_pipeline():
dataset_gcs_uri = "gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv"
feature_columns = ["trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"] # Excluded "trip_total"
label_column = "tips"
training_set_fraction = 0.8
# Deploying the model might incur additional costs over time
deploy_model = False
classification_label_column = "class"
all_columns = [label_column] + feature_columns
dataset = download_from_gcs_op(
gcs_path=dataset_gcs_uri
).outputs["Data"]
dataset = select_columns_using_Pandas_on_CSV_data_op(
table=dataset,
column_names=all_columns,
).outputs["transformed_table"]
dataset = fill_all_missing_values_using_Pandas_on_CSV_data_op(
table=dataset,
replacement_value="0",
# # Optional:
# column_names=None, # =[...]
).outputs["transformed_table"]
classification_dataset = binarize_column_using_Pandas_on_CSV_data_op(
table=dataset,
column_name=label_column,
predicate=" > 0",
new_column_name=classification_label_column,
).outputs["transformed_table"]
split_task = split_rows_into_subsets_op(
table=classification_dataset,
fraction_1=training_set_fraction,
)
classification_training_data = split_task.outputs["split_1"]
classification_testing_data = split_task.outputs["split_2"]
# TensorFlow
tensorflow_network = create_fully_connected_tensorflow_network_op(
input_size=len(feature_columns),
# Optional:
hidden_layer_sizes=[10],
activation_name="elu",
output_activation_name="sigmoid",
# output_size=1,
).outputs["model"]
tensorflow_model = train_model_using_Keras_on_CSV_op(
training_data=classification_training_data,
model=tensorflow_network,
label_column_name=classification_label_column,
# Optional:
loss_function_name="binary_crossentropy",
number_of_epochs=10,
#learning_rate=0.1,
#optimizer_name="Adadelta",
#optimizer_parameters={},
#batch_size=32,
#metric_names=["mean_absolute_error"],
#random_seed=0,
).outputs["trained_model"]
tensorflow_predictions = predict_with_TensorFlow_model_on_CSV_data_op(
dataset=classification_testing_data,
model=tensorflow_model,
# label_column_name needs to be set when doing prediction on a dataset that has labels
label_column_name=classification_label_column,
# Optional:
# batch_size=1000,
).outputs["predictions"]
tensorflow_vertex_model_name = upload_Tensorflow_model_to_Google_Cloud_Vertex_AI_op(
model=tensorflow_model,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
tensorflow_vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=tensorflow_vertex_model_name,
).outputs["endpoint_name"]
# PyTorch
pytorch_network = create_fully_connected_pytorch_network_op(
input_size=len(feature_columns),
# Optional:
hidden_layer_sizes=[10],
activation_name="elu",
output_activation_name="sigmoid",
# output_size=1,
).outputs["model"]
pytorch_model = train_pytorch_model_from_csv_op(
model=pytorch_network,
training_data=classification_training_data,
label_column_name=classification_label_column,
loss_function_name="binary_cross_entropy",
# Optional:
#number_of_epochs=1,
#learning_rate=0.1,
#optimizer_name="Adadelta",
#optimizer_parameters={},
#batch_size=32,
#batch_log_interval=100,
#random_seed=0,
).outputs["trained_model"]
pytorch_model_archive = create_pytorch_model_archive_with_base_handler_op(
model=pytorch_model,
# Optional:
# model_name="model",
# model_version="1.0",
).outputs["Model archive"]
pytorch_vertex_model_name = upload_PyTorch_model_archive_to_Google_Cloud_Vertex_AI_op(
model_archive=pytorch_model_archive,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
pytorch_vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=pytorch_vertex_model_name,
).outputs["endpoint_name"]
# XGBoost
xgboost_model = train_XGBoost_model_on_CSV_op(
training_data=classification_training_data,
label_column_name=classification_label_column,
objective="binary:logistic",
# Optional:
#starting_model=None,
#num_iterations=10,
#booster_params={},
#booster="gbtree",
#learning_rate=0.3,
#min_split_loss=0,
#max_depth=6,
).outputs["model"]
# Predicting on the testing data
xgboost_predictions = xgboost_predict_on_CSV_op(
data=classification_testing_data,
model=xgboost_model,
# label_column needs to be set when doing prediction on a dataset that has labels
label_column_name=classification_label_column,
).outputs["predictions"]
xgboost_vertex_model_name = upload_XGBoost_model_to_Google_Cloud_Vertex_AI_op(
model=xgboost_model,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
xgboost_vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=xgboost_vertex_model_name,
).outputs["endpoint_name"]
# Scikit-learn
sklearn_model = train_logistic_regression_model_using_scikit_learn_from_CSV_op(
dataset=classification_training_data,
label_column_name=classification_label_column,
# Optional:
#penalty="l2",
#solver="lbfgs",
#max_iterations=100,
#multi_class_mode="auto",
#random_seed=0,
).outputs["model"]
sklearn_vertex_model_name = upload_Scikit_learn_pickle_model_to_Google_Cloud_Vertex_AI_op(
model=sklearn_model,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
sklearn_vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=sklearn_vertex_model_name,
).outputs["endpoint_name"]
pipeline_func=train_tabular_classification_model_using_all_frameworks_pipeline
# %% Pipeline submission
if __name__ == '__main__':
from google.cloud import aiplatform
aiplatform.PipelineJob.from_pipeline_func(pipeline_func=pipeline_func).submit()
@@ -1,68 +0,0 @@
name: Train tabular regression linear model using Scikit learn pipeline
metadata:
annotations:
author: Alexey Volkov <alexey.volkov@ark-kun.com>
canonical_location: https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/samples/Google_Cloud_Vertex_AI/Train_tabular_regression_linear_model_using_Scikit_learn_and_import_to_Vertex_AI/pipeline.component.yaml
sdk: https://cloud-pipelines.net/pipeline-editor/
implementation:
graph:
tasks:
Download from GCS:
componentRef:
digest: 4175c9ff143cb8cc75d05451c0a0ebdf5a0d6d020816e29f5e9cefbb7d56f241
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/27a5ea25e849c9e8c0cb6ed65518bc3ece259aaf/components/google-cloud/storage/download/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
GCS path: gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv
annotations:
editor.position: '{"x":40,"y":40,"width":180,"height":40}'
Select columns using Pandas on CSV data:
componentRef:
digest: 9b9500f461c1d04f1e48992de9138db14a6800f23649d73048673d5ea6dc56ad
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/8c78aae096806cff3bc331a40566f42f5c3e9d4b/components/pandas/Select_columns/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: Data
taskId: Download from GCS
column_names: '["tips", "trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"]'
annotations:
editor.position: '{"x":40,"y":140,"width":180,"height":54}'
Fill all missing values using Pandas on CSV data:
componentRef:
digest: a1b0c29a4615f2e3652aa5d31b9255fa15700e146627c755f8fc172f82e71af7
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/23405971f5f16a41b16c343129b893c52e4d1d48/components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Select columns using Pandas on CSV data
type: CSV
replacement_value: '0'
annotations:
editor.position: '{"x":40,"y":250,"width":180,"height":54}'
Train linear regression model using scikit learn from CSV:
componentRef:
digest: c7fe7912ab0d1fb45d201d452e9ce6be5544e7d8c6d229db7a4b931ff58560f3
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/f807e02b54d4886c65a05f40848fd51c72407f40/components/ML_frameworks/Scikit_learn/Train_linear_regression_model/from_CSV/component.yaml
arguments:
dataset:
taskOutput:
outputName: transformed_table
taskId: Fill all missing values using Pandas on CSV data
type: CSV
label_column_name: tips
annotations:
editor.position: '{"x":40,"y":360,"width":180,"height":54}'
Upload Scikit learn pickle model to Google Cloud Vertex AI:
componentRef:
digest: 81c91c8d7d21ec97e0872f669d68bd89edea87279d703685db54aa94743bebcd
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/c6a8b67d1ada2cc17665c99ff6b410df588bee28/components/google-cloud/Vertex_AI/Models/Upload_Scikit-learn_pickle_model/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
model:
taskOutput:
outputName: model
taskId: Train linear regression model using scikit learn from CSV
type: ScikitLearnPickleModel
annotations:
editor.position: '{"x":40,"y":490,"width":180,"height":70}'
outputValues: {}
@@ -1,57 +0,0 @@
# python3 -m pip install "kfp<2.0.0" "google-cloud-aiplatform>=1.16.0" --upgrade --quiet
from kfp import components
# %% Loading components
download_from_gcs_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/storage/download/component.yaml")
select_columns_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Select_columns/in_CSV_format/component.yaml")
fill_all_missing_values_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml")
train_linear_regression_model_using_scikit_learn_from_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/1f5cf6e06409b704064b2086c0a705e4e6b4fcde/community-content/pipeline_components/ML_frameworks/Scikit_learn/Train_linear_regression_model/from_CSV/component.yaml")
upload_Scikit_learn_pickle_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_Scikit-learn_pickle_model/component.yaml")
deploy_model_to_endpoint_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Deploy_to_endpoint/component.yaml")
# %% Pipeline definition
def train_tabular_regression_linear_model_using_Scikit_learn_pipeline():
dataset_gcs_uri = "gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv"
feature_columns = ["trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"] # Excluded "trip_total"
label_column = "tips"
all_columns = [label_column] + feature_columns
# Deploying the model might incur additional costs over time
deploy_model = False
training_data = download_from_gcs_op(
gcs_path=dataset_gcs_uri
).outputs["Data"]
training_data = select_columns_using_Pandas_on_CSV_data_op(
table=training_data,
column_names=all_columns,
).outputs["transformed_table"]
# Cleaning the NaN values.
training_data = fill_all_missing_values_using_Pandas_on_CSV_data_op(
table=training_data,
replacement_value="0",
#replacement_type_name="float",
).outputs["transformed_table"]
model = train_linear_regression_model_using_scikit_learn_from_CSV_op(
dataset=training_data,
label_column_name=label_column,
).outputs["model"]
vertex_model_name = upload_Scikit_learn_pickle_model_to_Google_Cloud_Vertex_AI_op(
model=model,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
sklearn_vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=vertex_model_name,
).outputs["endpoint_name"]
pipeline_func = train_tabular_regression_linear_model_using_Scikit_learn_pipeline
# %% Pipeline submission
if __name__ == '__main__':
from google.cloud import aiplatform
aiplatform.PipelineJob.from_pipeline_func(pipeline_func=pipeline_func).submit()
@@ -1,97 +0,0 @@
name: Train tabular regression model using PyTorch pipeline
metadata:
annotations:
author: Alexey Volkov <alexey.volkov@ark-kun.com>
canonical_location: https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/samples/Google_Cloud_Vertex_AI/Train_tabular_regression_model_using_PyTorch_and_import_to_Vertex_AI/pipeline.component.yaml
sdk: https://cloud-pipelines.net/pipeline-editor/
implementation:
graph:
tasks:
Download from GCS:
componentRef:
digest: 4175c9ff143cb8cc75d05451c0a0ebdf5a0d6d020816e29f5e9cefbb7d56f241
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/27a5ea25e849c9e8c0cb6ed65518bc3ece259aaf/components/google-cloud/storage/download/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
GCS path: gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv
annotations:
editor.position: '{"x":240,"y":40,"width":180,"height":40}'
Select columns using Pandas on CSV data:
componentRef:
digest: 9b9500f461c1d04f1e48992de9138db14a6800f23649d73048673d5ea6dc56ad
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/8c78aae096806cff3bc331a40566f42f5c3e9d4b/components/pandas/Select_columns/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: Data
taskId: Download from GCS
column_names: '["tips", "trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"]'
annotations:
editor.position: '{"x":240,"y":130,"width":180,"height":54}'
Create fully connected pytorch network:
componentRef:
digest: d03d8248fd358a0275ec33568ee7dd7dce576cc112b09dfafe2651e4d97e04a9
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/1a2ef3eeb77bc278f33cad0dd29008ea2431e191/components/PyTorch/Create_fully_connected_network/component.yaml
arguments:
input_size: '7'
hidden_layer_sizes: '[10]'
activation_name: elu
annotations:
editor.position: '{"x":40,"y":240,"width":180,"height":54}'
Fill all missing values using Pandas on CSV data:
componentRef:
digest: a1b0c29a4615f2e3652aa5d31b9255fa15700e146627c755f8fc172f82e71af7
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/23405971f5f16a41b16c343129b893c52e4d1d48/components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Select columns using Pandas on CSV data
type: CSV
replacement_value: '0'
annotations:
editor.position: '{"x":240,"y":240,"width":180,"height":54}'
Train pytorch model from csv:
componentRef:
digest: 40f3185eb61e9727f41a4e0c05dd3d3b44bd802aa0f378cfc31756560033949a
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/d8c4cf5e6403bc65bcf8d606e6baf87e2528a3dc/components/PyTorch/Train_PyTorch_model/from_CSV/component.yaml
arguments:
model:
taskOutput:
outputName: model
taskId: Create fully connected pytorch network
type: PyTorchScriptModule
training_data:
taskOutput:
outputName: transformed_table
taskId: Fill all missing values using Pandas on CSV data
type: CSV
label_column_name: tips
annotations:
editor.position: '{"x":240,"y":380,"width":180,"height":40}'
Create PyTorch Model Archive with base handler:
componentRef:
digest: 8298b5ee1b0f0879f893add4cf352c8dec7cf9e21bb9db134c91a2d046cdb0ec
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/46d51383e6554b7f3ab4fd8cf614d8c2b422fb22/components/PyTorch/Create_PyTorch_Model_Archive/with_base_handler/component.yaml
arguments:
Model:
taskOutput:
outputName: trained_model
taskId: Train pytorch model from csv
type: PyTorchScriptModule
Model name: model
Model version: '1.0'
annotations:
editor.position: '{"x":240,"y":500,"width":180,"height":54}'
Upload PyTorch model archive to Google Cloud Vertex AI:
componentRef:
digest: 4450212fae7b9001482aca7eb78b28413c205506eccf08a04e7754a8dfa99004
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/c6a8b67d1ada2cc17665c99ff6b410df588bee28/components/google-cloud/Vertex_AI/Models/Upload_PyTorch_model_archive/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
model_archive:
taskOutput:
outputName: Model archive
taskId: Create PyTorch Model Archive with base handler
type: PyTorchModelArchive
annotations:
editor.position: '{"x":240,"y":630,"width":180,"height":70}'
outputValues: {}
@@ -1,85 +0,0 @@
# python3 -m pip install "kfp<2.0.0" "google-cloud-aiplatform>=1.16.0" --upgrade --quiet
from kfp import components
# %% Loading components
download_from_gcs_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/storage/download/component.yaml")
select_columns_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Select_columns/in_CSV_format/component.yaml")
fill_all_missing_values_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml")
create_fully_connected_pytorch_network_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/PyTorch/Create_fully_connected_network/component.yaml")
train_pytorch_model_from_csv_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/PyTorch/Train_PyTorch_model/from_CSV/component.yaml")
create_pytorch_model_archive_with_base_handler_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/PyTorch/Create_PyTorch_Model_Archive/with_base_handler/component.yaml")
upload_PyTorch_model_archive_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_PyTorch_model_archive/component.yaml")
deploy_model_to_endpoint_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Deploy_to_endpoint/component.yaml")
# %% Pipeline definition
def train_tabular_regression_model_using_PyTorch_pipeline():
dataset_gcs_uri = "gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv"
feature_columns = ["trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"] # Excluded "trip_total"
label_column = "tips"
all_columns = [label_column] + feature_columns
# Deploying the model might incur additional costs over time
deploy_model = False
training_data = download_from_gcs_op(
gcs_path=dataset_gcs_uri
).outputs["Data"]
training_data = select_columns_using_Pandas_on_CSV_data_op(
table=training_data,
column_names=all_columns,
).outputs["transformed_table"]
# Cleaning the NaN values.
training_data = fill_all_missing_values_using_Pandas_on_CSV_data_op(
table=training_data,
replacement_value="0",
#replacement_type_name="float",
).outputs["transformed_table"]
network = create_fully_connected_pytorch_network_op(
input_size=len(feature_columns),
# Optional:
hidden_layer_sizes=[10],
activation_name="elu",
# output_activation_name=None,
# output_size=1,
).outputs["model"]
model = train_pytorch_model_from_csv_op(
model=network,
training_data=training_data,
label_column_name=label_column,
# Optional:
#loss_function_name="mse_loss",
#number_of_epochs=1,
#learning_rate=0.1,
#optimizer_name="Adadelta",
#optimizer_parameters={},
#batch_size=32,
#batch_log_interval=100,
#random_seed=0,
).outputs["trained_model"]
model_archive = create_pytorch_model_archive_with_base_handler_op(
model=model,
# Optional:
# model_name="model",
# model_version="1.0",
).outputs["Model archive"]
vertex_model_name = upload_PyTorch_model_archive_to_Google_Cloud_Vertex_AI_op(
model_archive=model_archive,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=vertex_model_name,
).outputs["endpoint_name"]
pipeline_func=train_tabular_regression_model_using_PyTorch_pipeline
# %% Pipeline submission
if __name__ == '__main__':
from google.cloud import aiplatform
aiplatform.PipelineJob.from_pipeline_func(pipeline_func=pipeline_func).submit()
@@ -1,116 +0,0 @@
name: Train tabular regression model using Tensorflow pipeline
metadata:
annotations:
author: Alexey Volkov <alexey.volkov@ark-kun.com>
canonical_location: https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/samples/Google_Cloud_Vertex_AI/Train_tabular_regression_model_using_TensorFlow_and_import_to_Vertex_AI/pipeline.component.yaml
sdk: https://cloud-pipelines.net/pipeline-editor/
implementation:
graph:
tasks:
Download from GCS:
componentRef:
digest: 4175c9ff143cb8cc75d05451c0a0ebdf5a0d6d020816e29f5e9cefbb7d56f241
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/27a5ea25e849c9e8c0cb6ed65518bc3ece259aaf/components/google-cloud/storage/download/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
GCS path: gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv
annotations:
editor.position: '{"x":40,"y":40,"width":180,"height":40}'
Select columns using Pandas on CSV data:
componentRef:
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url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/8c78aae096806cff3bc331a40566f42f5c3e9d4b/components/pandas/Select_columns/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: Data
taskId: Download from GCS
column_names: '["tips", "trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"]'
annotations:
editor.position: '{"x":40,"y":140,"width":180,"height":54}'
Fill all missing values using Pandas on CSV data:
componentRef:
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url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/23405971f5f16a41b16c343129b893c52e4d1d48/components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Select columns using Pandas on CSV data
type: CSV
replacement_value: '0'
annotations:
editor.position: '{"x":40,"y":250,"width":180,"height":54}'
Split rows into subsets:
componentRef:
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url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/daae5a4abaa35e44501818b1534ed7827d7da073/components/dataset_manipulation/Split_rows_into_subsets/in_CSV/component.yaml
arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Fill all missing values using Pandas on CSV data
type: CSV
fraction_1: '0.8'
annotations:
editor.position: '{"x":170,"y":380,"width":180,"height":40}'
Create fully connected tensorflow network:
componentRef:
digest: bfcafbc5ce711b1f69cabf1338212d10d50136a73db9f9f7c984de7b80b4bfb0
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/9ca0f9eecf5f896f65b8538bbd809747052617d1/components/tensorflow/Create_fully_connected_network/component.yaml
arguments:
input_size: '7'
hidden_layer_sizes: '[10]'
activation_name: elu
annotations:
editor.position: '{"x":370,"y":380,"width":180,"height":54}'
Train model using Keras on CSV:
componentRef:
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url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/c504a4010348c50eaaf6d4337586ccc008f4dcef/components/tensorflow/Train_model_using_Keras/on_CSV/component.yaml
arguments:
training_data:
taskOutput:
outputName: split_1
taskId: Split rows into subsets
type: CSV
model:
taskOutput:
outputName: model
taskId: Create fully connected tensorflow network
type: TensorflowSavedModel
label_column_name: tips
number_of_epochs: '10'
metric_names: '["mean_absolute_error"]'
annotations:
editor.position: '{"x":40,"y":500,"width":180,"height":54}'
Upload Tensorflow model to Google Cloud Vertex AI:
componentRef:
digest: 2e45263ff640b1a688e359b6936e27a81b2407749a84f340af2aa5547e0cb92c
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/c6a8b67d1ada2cc17665c99ff6b410df588bee28/components/google-cloud/Vertex_AI/Models/Upload_Tensorflow_model/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
model:
taskOutput:
outputName: trained_model
taskId: Train model using Keras on CSV
type: TensorflowSavedModel
annotations:
editor.position: '{"x":40,"y":630,"width":180,"height":54}'
Predict with TensorFlow model on CSV data:
componentRef:
digest: 921bb1563e93a78233b8acceab87055b9154ccf5595d056028cf0396ca224cd4
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/59c759ce6f543184e30db6817d2a703879bc0f39/components/tensorflow/Predict/on_CSV/component.yaml
arguments:
dataset:
taskOutput:
outputName: split_2
taskId: Split rows into subsets
type: CSV
model:
taskOutput:
outputName: trained_model
taskId: Train model using Keras on CSV
type: TensorflowSavedModel
label_column_name: tips
annotations:
editor.position: '{"x":240,"y":630,"width":180,"height":54}'
outputValues: {}
@@ -1,97 +0,0 @@
# python3 -m pip install "kfp<2.0.0" "google-cloud-aiplatform>=1.16.0" --upgrade --quiet
from kfp import components
# %% Loading components
download_from_gcs_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/storage/download/component.yaml")
select_columns_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Select_columns/in_CSV_format/component.yaml")
fill_all_missing_values_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml")
split_rows_into_subsets_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/dataset_manipulation/Split_rows_into_subsets/in_CSV/component.yaml")
create_fully_connected_tensorflow_network_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/tensorflow/Create_fully_connected_network/component.yaml")
train_model_using_Keras_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/tensorflow/Train_model_using_Keras/on_CSV/component.yaml")
predict_with_TensorFlow_model_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/tensorflow/Predict/on_CSV/component.yaml")
upload_Tensorflow_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_Tensorflow_model/component.yaml")
deploy_model_to_endpoint_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Deploy_to_endpoint/component.yaml")
# %% Pipeline definition
def train_tabular_regression_model_using_Tensorflow_pipeline():
dataset_gcs_uri = "gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv"
feature_columns = ["trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"] # Excluded "trip_total"
label_column = "tips"
training_set_fraction = 0.8
# Deploying the model might incur additional costs over time
deploy_model = False
all_columns = [label_column] + feature_columns
dataset = download_from_gcs_op(
gcs_path=dataset_gcs_uri
).outputs["Data"]
dataset = select_columns_using_Pandas_on_CSV_data_op(
table=dataset,
column_names=all_columns,
).outputs["transformed_table"]
dataset = fill_all_missing_values_using_Pandas_on_CSV_data_op(
table=dataset,
replacement_value="0",
# # Optional:
# column_names=None, # =[...]
).outputs["transformed_table"]
split_task = split_rows_into_subsets_op(
table=dataset,
fraction_1=training_set_fraction,
)
training_data = split_task.outputs["split_1"]
testing_data = split_task.outputs["split_2"]
network = create_fully_connected_tensorflow_network_op(
input_size=len(feature_columns),
# Optional:
hidden_layer_sizes=[10],
activation_name="elu",
# output_activation_name=None,
# output_size=1,
).outputs["model"]
model = train_model_using_Keras_on_CSV_op(
training_data=training_data,
model=network,
label_column_name=label_column,
# Optional:
#loss_function_name="mean_squared_error",
number_of_epochs=10,
#learning_rate=0.1,
#optimizer_name="Adadelta",
#optimizer_parameters={},
#batch_size=32,
metric_names=["mean_absolute_error"],
#random_seed=0,
).outputs["trained_model"]
predictions = predict_with_TensorFlow_model_on_CSV_data_op(
dataset=testing_data,
model=model,
# label_column_name needs to be set when doing prediction on a dataset that has labels
label_column_name=label_column,
# Optional:
# batch_size=1000,
).outputs["predictions"]
vertex_model_name = upload_Tensorflow_model_to_Google_Cloud_Vertex_AI_op(
model=model,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=vertex_model_name,
).outputs["endpoint_name"]
pipeline_func=train_tabular_regression_model_using_Tensorflow_pipeline
# %% Pipeline submission
if __name__ == '__main__':
from google.cloud import aiplatform
aiplatform.PipelineJob.from_pipeline_func(pipeline_func=pipeline_func).submit()
@@ -1,99 +0,0 @@
name: Train tabular regression model using XGBoost pipeline
metadata:
annotations:
author: Alexey Volkov <alexey.volkov@ark-kun.com>
canonical_location: https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/samples/Google_Cloud_Vertex_AI/Train_tabular_regression_model_using_XGBoost_and_import_to_Vertex_AI/pipeline.component.yaml
sdk: https://cloud-pipelines.net/pipeline-editor/
implementation:
graph:
tasks:
Download from GCS:
componentRef:
digest: 4175c9ff143cb8cc75d05451c0a0ebdf5a0d6d020816e29f5e9cefbb7d56f241
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/27a5ea25e849c9e8c0cb6ed65518bc3ece259aaf/components/google-cloud/storage/download/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
GCS path: gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv
annotations:
editor.position: '{"x":40,"y":40,"width":180,"height":40}'
Select columns using Pandas on CSV data:
componentRef:
digest: 9b9500f461c1d04f1e48992de9138db14a6800f23649d73048673d5ea6dc56ad
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/8c78aae096806cff3bc331a40566f42f5c3e9d4b/components/pandas/Select_columns/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: Data
taskId: Download from GCS
column_names: '["tips", "trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"]'
annotations:
editor.position: '{"x":40,"y":140,"width":180,"height":54}'
Fill all missing values using Pandas on CSV data:
componentRef:
digest: a1b0c29a4615f2e3652aa5d31b9255fa15700e146627c755f8fc172f82e71af7
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/23405971f5f16a41b16c343129b893c52e4d1d48/components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml
arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Select columns using Pandas on CSV data
type: CSV
replacement_value: '0'
annotations:
editor.position: '{"x":40,"y":250,"width":180,"height":54}'
Split rows into subsets:
componentRef:
digest: a609c3c9196484290f24a1174955f95b27f07a7b458aa5cb8cde28866cb2cb46
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/daae5a4abaa35e44501818b1534ed7827d7da073/components/dataset_manipulation/Split_rows_into_subsets/in_CSV/component.yaml
arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Fill all missing values using Pandas on CSV data
type: CSV
fraction_1: '0.8'
annotations:
editor.position: '{"x":170,"y":360,"width":180,"height":40}'
Train XGBoost model on CSV:
componentRef:
digest: 538c5a01eb38deaf532d619f0bbeaff4efc550fe1f0f776fc06791097b68ceac
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/58d3a47f904f32a64af8403330ba7e2134cae46d/components/XGBoost/Train/component.yaml
arguments:
training_data:
taskOutput:
outputName: split_1
taskId: Split rows into subsets
type: CSV
label_column_name: tips
annotations:
editor.position: '{"x":40,"y":480,"width":180,"height":40}'
Upload XGBoost model to Google Cloud Vertex AI:
componentRef:
digest: 5a5a273c403670743820986c03a4175b7cb4595a556524fefcce403656286977
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/c6a8b67d1ada2cc17665c99ff6b410df588bee28/components/google-cloud/Vertex_AI/Models/Upload_XGBoost_model/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
model:
taskOutput:
outputName: model
taskId: Train XGBoost model on CSV
type: XGBoostModel
annotations:
editor.position: '{"x":40,"y":600,"width":180,"height":54}'
Xgboost predict on CSV:
componentRef:
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url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/4694ec97baccf59284c2a1db4aa2250c22291eab/components/XGBoost/Predict/component.yaml
arguments:
data:
taskOutput:
outputName: split_2
taskId: Split rows into subsets
type: CSV
model:
taskOutput:
outputName: model
taskId: Train XGBoost model on CSV
type: XGBoostModel
label_column_name: tips
annotations:
editor.position: '{"x":240,"y":600,"width":180,"height":40}'
outputValues: {}
@@ -1,85 +0,0 @@
# python3 -m pip install "kfp<2.0.0" "google-cloud-aiplatform>=1.16.0" --upgrade --quiet
from kfp import components
# %% Loading components
download_from_gcs_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/storage/download/component.yaml")
select_columns_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Select_columns/in_CSV_format/component.yaml")
fill_all_missing_values_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml")
split_rows_into_subsets_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/dataset_manipulation/Split_rows_into_subsets/in_CSV/component.yaml")
train_XGBoost_model_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/XGBoost/Train/component.yaml")
xgboost_predict_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/XGBoost/Predict/component.yaml")
upload_XGBoost_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/d5c9918850a6cc70004c4269dae066cfe2e664eb/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_XGBoost_model/component.yaml")
deploy_model_to_endpoint_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Deploy_to_endpoint/component.yaml")
# %% Pipeline definition
def train_tabular_regression_model_using_XGBoost_pipeline():
dataset_gcs_uri = "gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv"
feature_columns = ["trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"] # Excluded "trip_total"
label_column = "tips"
training_set_fraction = 0.8
# Deploying the model might incur additional costs over time
deploy_model = False
all_columns = [label_column] + feature_columns
dataset = download_from_gcs_op(
gcs_path=dataset_gcs_uri
).outputs["Data"]
dataset = select_columns_using_Pandas_on_CSV_data_op(
table=dataset,
column_names=all_columns,
).outputs["transformed_table"]
dataset = fill_all_missing_values_using_Pandas_on_CSV_data_op(
table=dataset,
replacement_value="0",
# # Optional:
# column_names=None, # =[...]
).outputs["transformed_table"]
split_task = split_rows_into_subsets_op(
table=dataset,
fraction_1=training_set_fraction,
)
training_data = split_task.outputs["split_1"]
testing_data = split_task.outputs["split_2"]
model = train_XGBoost_model_on_CSV_op(
training_data=training_data,
label_column_name=label_column,
# Optional:
#starting_model=None,
#num_iterations=10,
#booster_params={},
#objective="reg:squarederror",
#booster="gbtree",
#learning_rate=0.3,
#min_split_loss=0,
#max_depth=6,
).outputs["model"]
# Predicting on the testing data
predictions = xgboost_predict_on_CSV_op(
data=testing_data,
model=model,
# label_column needs to be set when doing prediction on a dataset that has labels
label_column_name=label_column,
).outputs["predictions"]
vertex_model_name = upload_XGBoost_model_to_Google_Cloud_Vertex_AI_op(
model=model,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=vertex_model_name,
).outputs["endpoint_name"]
pipeline_func = train_tabular_regression_model_using_XGBoost_pipeline
# %% Pipeline submission
if __name__ == '__main__':
from google.cloud import aiplatform
aiplatform.PipelineJob.from_pipeline_func(pipeline_func=pipeline_func).submit()
@@ -1,238 +0,0 @@
name: Train tabular regression model using all frameworks pipeline
metadata:
annotations:
author: Alexey Volkov <alexey.volkov@ark-kun.com>
canonical_location: https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/samples/Google_Cloud_Vertex_AI/Train_tabular_regression_model_using_all_frameworks_and_import_to_Vertex_AI/pipeline.component.yaml
sdk: https://cloud-pipelines.net/pipeline-editor/
implementation:
graph:
tasks:
Download from GCS:
componentRef:
digest: 4175c9ff143cb8cc75d05451c0a0ebdf5a0d6d020816e29f5e9cefbb7d56f241
url: https://raw.githubusercontent.com/Ark-kun/pipeline_components/27a5ea25e849c9e8c0cb6ed65518bc3ece259aaf/components/google-cloud/storage/download/workaround_for_buggy_KFPv2_compiler/component.yaml
arguments:
GCS path: gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv
annotations:
editor.position: '{"x":550,"y":40,"width":180,"height":40}'
Select columns using Pandas on CSV data:
componentRef:
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arguments:
table:
taskOutput:
outputName: Data
taskId: Download from GCS
column_names: '["tips", "trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"]'
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Fill all missing values using Pandas on CSV data:
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table:
taskOutput:
outputName: transformed_table
taskId: Select columns using Pandas on CSV data
type: CSV
replacement_value: '0'
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Split rows into subsets:
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arguments:
table:
taskOutput:
outputName: transformed_table
taskId: Fill all missing values using Pandas on CSV data
type: CSV
fraction_1: '0.8'
annotations:
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Create fully connected pytorch network:
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arguments:
input_size: '7'
hidden_layer_sizes: '[10]'
activation_name: elu
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Create fully connected tensorflow network:
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arguments:
input_size: '7'
hidden_layer_sizes: '[10]'
activation_name: elu
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Train model using Keras on CSV:
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arguments:
training_data:
taskOutput:
outputName: split_1
taskId: Split rows into subsets
type: CSV
model:
taskOutput:
outputName: model
taskId: Create fully connected tensorflow network
type: TensorflowSavedModel
label_column_name: tips
number_of_epochs: '10'
metric_names: '["mean_absolute_error"]'
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Train pytorch model from csv:
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arguments:
model:
taskOutput:
outputName: model
taskId: Create fully connected pytorch network
type: PyTorchScriptModule
training_data:
taskOutput:
outputName: split_1
taskId: Split rows into subsets
type: CSV
label_column_name: tips
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Train XGBoost model on CSV:
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arguments:
training_data:
taskOutput:
outputName: split_1
taskId: Split rows into subsets
type: CSV
label_column_name: tips
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Train linear regression model using scikit learn from CSV:
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arguments:
dataset:
taskOutput:
outputName: split_1
taskId: Split rows into subsets
type: CSV
label_column_name: tips
annotations:
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Predict with TensorFlow model on CSV data:
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arguments:
dataset:
taskOutput:
outputName: split_2
taskId: Split rows into subsets
type: CSV
model:
taskOutput:
outputName: trained_model
taskId: Train model using Keras on CSV
type: TensorflowSavedModel
label_column_name: tips
annotations:
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Create PyTorch Model Archive with base handler:
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arguments:
Model:
taskOutput:
outputName: trained_model
taskId: Train pytorch model from csv
type: PyTorchScriptModule
Model name: model
Model version: '1.0'
annotations:
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Xgboost predict on CSV:
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arguments:
data:
taskOutput:
outputName: split_2
taskId: Split rows into subsets
type: CSV
model:
taskOutput:
outputName: model
taskId: Train XGBoost model on CSV
type: XGBoostModel
label_column_name: tips
annotations:
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Upload Scikit learn pickle model to Google Cloud Vertex AI:
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arguments:
model:
taskOutput:
outputName: model
taskId: Train linear regression model using scikit learn from CSV
type: ScikitLearnPickleModel
annotations:
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Upload Tensorflow model to Google Cloud Vertex AI:
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arguments:
model:
taskOutput:
outputName: trained_model
taskId: Train model using Keras on CSV
type: TensorflowSavedModel
annotations:
editor.position: '{"x":40,"y":880,"width":180,"height":54}'
Upload PyTorch model archive to Google Cloud Vertex AI:
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arguments:
model_archive:
taskOutput:
outputName: Model archive
taskId: Create PyTorch Model Archive with base handler
type: PyTorchModelArchive
annotations:
editor.position: '{"x":380,"y":880,"width":180,"height":70}'
Upload XGBoost model to Google Cloud Vertex AI:
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arguments:
model:
taskOutput:
outputName: model
taskId: Train XGBoost model on CSV
type: XGBoostModel
annotations:
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outputValues: {}
@@ -1,208 +0,0 @@
# python3 -m pip install "kfp<2.0.0" "google-cloud-aiplatform>=1.16.0" --upgrade --quiet
from kfp import components
# %% Loading components
download_from_gcs_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/storage/download/component.yaml")
select_columns_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Select_columns/in_CSV_format/component.yaml")
fill_all_missing_values_using_Pandas_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml")
split_rows_into_subsets_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/dataset_manipulation/Split_rows_into_subsets/in_CSV/component.yaml")
# TensorFlow
create_fully_connected_tensorflow_network_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/tensorflow/Create_fully_connected_network/component.yaml")
train_model_using_Keras_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/tensorflow/Train_model_using_Keras/on_CSV/component.yaml")
predict_with_TensorFlow_model_on_CSV_data_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/tensorflow/Predict/on_CSV/component.yaml")
upload_Tensorflow_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_Tensorflow_model/component.yaml")
# PyTorch
create_fully_connected_pytorch_network_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/PyTorch/Create_fully_connected_network/component.yaml")
train_pytorch_model_from_csv_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/PyTorch/Train_PyTorch_model/from_CSV/component.yaml")
create_pytorch_model_archive_with_base_handler_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/PyTorch/Create_PyTorch_Model_Archive/with_base_handler/component.yaml")
upload_PyTorch_model_archive_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_PyTorch_model_archive/component.yaml")
# XGBoost
train_XGBoost_model_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/XGBoost/Train/component.yaml")
xgboost_predict_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/XGBoost/Predict/component.yaml")
upload_XGBoost_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/d5c9918850a6cc70004c4269dae066cfe2e664eb/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_XGBoost_model/component.yaml")
# Scikit-learn
train_linear_regression_model_using_scikit_learn_from_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/1f5cf6e06409b704064b2086c0a705e4e6b4fcde/community-content/pipeline_components/ML_frameworks/Scikit_learn/Train_linear_regression_model/from_CSV/component.yaml")
upload_Scikit_learn_pickle_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_Scikit-learn_pickle_model/component.yaml")
# Vertex AI
deploy_model_to_endpoint_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Deploy_to_endpoint/component.yaml")
# %% Pipeline definition
def train_tabular_regression_model_using_all_frameworks_pipeline():
dataset_gcs_uri = "gs://ml-pipeline-dataset/Chicago_taxi_trips/chicago_taxi_trips_2019-01-01_-_2019-02-01_limit=10000.csv"
feature_columns = ["trip_seconds", "trip_miles", "pickup_community_area", "dropoff_community_area", "fare", "tolls", "extras"] # Excluded "trip_total"
label_column = "tips"
training_set_fraction = 0.8
# Deploying the model might incur additional costs over time
deploy_model = False
all_columns = [label_column] + feature_columns
dataset = download_from_gcs_op(
gcs_path=dataset_gcs_uri
).outputs["Data"]
dataset = select_columns_using_Pandas_on_CSV_data_op(
table=dataset,
column_names=all_columns,
).outputs["transformed_table"]
dataset = fill_all_missing_values_using_Pandas_on_CSV_data_op(
table=dataset,
replacement_value="0",
# # Optional:
# column_names=None, # =[...]
).outputs["transformed_table"]
split_task = split_rows_into_subsets_op(
table=dataset,
fraction_1=training_set_fraction,
)
training_data = split_task.outputs["split_1"]
testing_data = split_task.outputs["split_2"]
# TensorFlow
tensorflow_network = create_fully_connected_tensorflow_network_op(
input_size=len(feature_columns),
# Optional:
hidden_layer_sizes=[10],
activation_name="elu",
# output_activation_name=None,
# output_size=1,
).outputs["model"]
tensorflow_model = train_model_using_Keras_on_CSV_op(
training_data=training_data,
model=tensorflow_network,
label_column_name=label_column,
# Optional:
#loss_function_name="mean_squared_error",
number_of_epochs=10,
#learning_rate=0.1,
#optimizer_name="Adadelta",
#optimizer_parameters={},
#batch_size=32,
metric_names=["mean_absolute_error"],
#random_seed=0,
).outputs["trained_model"]
tensorflow_predictions = predict_with_TensorFlow_model_on_CSV_data_op(
dataset=testing_data,
model=tensorflow_model,
# label_column_name needs to be set when doing prediction on a dataset that has labels
label_column_name=label_column,
# Optional:
# batch_size=1000,
).outputs["predictions"]
tensorflow_vertex_model_name = upload_Tensorflow_model_to_Google_Cloud_Vertex_AI_op(
model=tensorflow_model,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
tensorflow_vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=tensorflow_vertex_model_name,
).outputs["endpoint_name"]
# PyTorch
pytorch_network = create_fully_connected_pytorch_network_op(
input_size=len(feature_columns),
# Optional:
hidden_layer_sizes=[10],
activation_name="elu",
# output_activation_name=None,
# output_size=1,
).outputs["model"]
pytorch_model = train_pytorch_model_from_csv_op(
model=pytorch_network,
training_data=training_data,
label_column_name=label_column,
# Optional:
#loss_function_name="mse_loss",
#number_of_epochs=1,
#learning_rate=0.1,
#optimizer_name="Adadelta",
#optimizer_parameters={},
#batch_size=32,
#batch_log_interval=100,
#random_seed=0,
).outputs["trained_model"]
pytorch_model_archive = create_pytorch_model_archive_with_base_handler_op(
model=pytorch_model,
# Optional:
# model_name="model",
# model_version="1.0",
).outputs["Model archive"]
pytorch_vertex_model_name = upload_PyTorch_model_archive_to_Google_Cloud_Vertex_AI_op(
model_archive=pytorch_model_archive,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
pytorch_vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=pytorch_vertex_model_name,
).outputs["endpoint_name"]
# XGBoost
xgboost_model = train_XGBoost_model_on_CSV_op(
training_data=training_data,
label_column_name=label_column,
# Optional:
#starting_model=None,
#num_iterations=10,
#booster_params={},
#objective="reg:squarederror",
#booster="gbtree",
#learning_rate=0.3,
#min_split_loss=0,
#max_depth=6,
).outputs["model"]
# Predicting on the testing data
xgboost_predictions = xgboost_predict_on_CSV_op(
data=testing_data,
model=xgboost_model,
# label_column needs to be set when doing prediction on a dataset that has labels
label_column_name=label_column,
).outputs["predictions"]
xgboost_vertex_model_name = upload_XGBoost_model_to_Google_Cloud_Vertex_AI_op(
model=xgboost_model,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
xgboost_vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=xgboost_vertex_model_name,
).outputs["endpoint_name"]
# Scikit-learn
sklearn_model = train_linear_regression_model_using_scikit_learn_from_CSV_op(
dataset=training_data,
label_column_name=label_column,
).outputs["model"]
sklearn_vertex_model_name = upload_Scikit_learn_pickle_model_to_Google_Cloud_Vertex_AI_op(
model=sklearn_model,
).outputs["model_name"]
# Deploying the model might incur additional costs over time
if deploy_model:
sklearn_vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=sklearn_vertex_model_name,
).outputs["endpoint_name"]
pipeline_func=train_tabular_regression_model_using_all_frameworks_pipeline
# %% Pipeline submission
if __name__ == '__main__':
from google.cloud import aiplatform
aiplatform.PipelineJob.from_pipeline_func(pipeline_func=pipeline_func).submit()
@@ -1,5 +0,0 @@
testdata/*
build.py
test.py
state_dict.pth
config.json
@@ -1,6 +0,0 @@
cpr_model_server.py
entrypoint.py
state_dict.pth
config.json
**/__pycache__
!testdata/**
@@ -1,110 +0,0 @@
# CPR Example: PyTorch Image Models (timm)
## About CPR
CPR ([custom prediction routines](https://github.com/googleapis/python-aiplatform/blob/main/google/cloud/aiplatform/prediction/README.md)) is a framework designed by Google Cloud developers to make it easier to combine machine learning models with custom preprocessing and postprocessing logic in a real-time serving application.
## Using this example
This code is a self-contained example of a custom model server project built using CPR.
As is, you can use it to serve the ViT-Small image classification model from Ross Wightman's [`timm`](https://github.com/rwightman/pytorch-image-models) library of image model implementations in PyTorch. Both CPU and GPU are supported.
You can also consider using the code here as a template for your own CPR project if you want to use a different model from `timm`, a different PyTorch model, or an entirely different framework.
### Requirements
In order to use this example, you'll need Docker and Python 3 installed on your system.
To get started, first create a virtual environment in an empty directory:
```sh
mkdir cpr-example
python3 -m venv cpr-example
cd cpr-example && source bin/activate
```
Then, clone the [vertex-ai-samples repo](https://github.com/GoogleCloudPlatform/vertex-ai-samples) in that directory:
```sh
git clone https://github.com/GoogleCloudPlatform/vertex-ai-samples.git
cd vertex-ai-samples/community-content/cpr-examples/timm_serving
```
Finally, install the Python modules required to build and run the model server:
```sh
pip install -r requirements.txt
```
### Auth
This example uses Google Cloud Storage for hosting model artifacts and Artifact Registry to store the container image.
You'll need to authorize yourself before you can interact with these.
First, log in to GCP with application default credentials:
```sh
gcloud auth application-default login
```
Next, if you haven't done so already, set up the [gcloud credential helper](https://cloud.google.com/artifact-registry/docs/docker/authentication)
for the Artifact Registry region where you intend to host the image.
```
gcloud auth configure-docker <region>-docker.pkg.dev
```
### Predictor
The `TimmPredictor` class in `timm_serving/predictor.py` implements most of the important logic for the server.
- `load(artifacts_dir)`: The predictor's `load` method is called when the server starts up in order to set up the predictor, usually by loading model weights and any artifacts needed for preprocessing and postprocessing. In this example, we initialize the saved model from the `state_dict.pth` file located inside the `artifacts_dir` folder and create the preprocessing transform from the model config.
- `preprocess`, `predict`, `postprocess`: These methods are applied in sequence to the deserialized JSON data from each request.
- `preprocess` decodes images from base64 and apply cropping, scaling and normalizing transforms.
- `predict` runs the ViT-Small model on the preprocessed images and returns class scores.
- `postprocess` finds the top five classes and packs the class names, probabilities, and indices in a serializable result.
### Building the container
To build the model server locally, run the build command:
```sh
python build.py build
```
You can edit configuration values such as the model server's base image, the name and tag assigned to the image, and the path where model weights are stored locally.
When you run the build command, model weights are downloaded and the model server container is built.
### Running local tests
`test.py` contains a suite of unit tests for the predictor as well as end-to-end tests for the model server.
To run the tests:
```sh
python test.py
```
All of the test images are public domain.
- [Cat](https://commons.wikimedia.org/wiki/File:Stray_cat_on_wall.jpg)
- [Airplane](https://commons.wikimedia.org/wiki/File:Airplanes_jets.jpg)
- The infamous [mandrill](https://commons.wikimedia.org/wiki/File:Wikipedia-sipi-image-db-mandrill-4.2.03.png)
### Deploying to Vertex AI
Before uploading or deploying the container, you'll need to modify `config.py` to set appropriate values for:
- `project_id`: Your GCP project id.
- `region`: Region where the model will be uploaded and deployed.
- `repository`: [Artifact Registry repository](https://cloud.google.com/artifact-registry/docs/repositories/create-repos) in your project where the container image will be uploaded.
- `artifacts_gcs_dir`: Folder in a [Google Cloud Storage bucket](https://cloud.google.com/storage/docs/creating-buckets) where the model weights will be uploaded.
Once this is done, first upload the model:
```sh
python build.py upload
```
Then deploy it:
```sh
python build.py deploy
```
If you run the deploy command again, it will create a new endpoint. If you want to undeploy the model, you can do so using the Vertex AI dashboard on the Google Cloud console, or use `gcloud ai endpoints undeploy` from the command line.
After deploying successfully, you can run `python build.py probe` to send a sample request to the deployed model.
@@ -1,117 +0,0 @@
# Copyright 2022 Google LLC
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
# https://www.apache.org/licenses/LICENSE-2.0
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Build the model server container."""
import json
import logging
import os
import pathlib
from typing import Sequence
from absl import app
from absl import logging
from config import CPRConfig
from google.cloud import aiplatform
from google.cloud.aiplatform import prediction as cpr
import smart_open
import timm
from timm_serving import predictor
import torch
def build_container(config: CPRConfig, tag: str) -> cpr.LocalModel:
"""Build the model server container.
Args:
tag: Output image tag.
Returns:
LocalModel exposing the built model server.
"""
return cpr.LocalModel.build_cpr_model(
src_dir=os.path.join(os.getcwd()),
output_image_uri=tag,
base_image=config.base_image,
predictor=predictor.TimmPredictor,
requirements_path=os.path.join(os.getcwd(), "requirements.txt"),
)
def save_model_artifact(destination: str) -> None:
"""Save a copy of the model state dict."""
model = timm.create_model(predictor.TimmPredictor.TIMM_MODEL_NAME, pretrained=True)
dest_file = os.path.join(destination, predictor.TimmPredictor.WEIGHTS_FILE)
with smart_open.open(dest_file, "wb") as f:
torch.save(model, f)
logging.info("Saved model to %s", dest_file)
logging.info("%s parameters", sum(p.numel() for p in model.parameters()))
def upload_model(config: CPRConfig) -> aiplatform.Model:
"""Tag and upload the model server."""
ar_tag = (
f"{config.region}-docker.pkg.dev/{config.project_id}"
f"/{config.repository}/{config.image}"
)
local_model = build_container(config, tag=ar_tag)
aiplatform.init(project=config.project_id, location=config.region)
local_model.push_image()
aip_model = aiplatform.Model.upload(
local_model=local_model,
display_name=predictor.TimmPredictor.TIMM_MODEL_NAME,
artifact_uri=config.artifact_gcs_dir,
)
config.model_name = aip_model.resource_name
config.save()
return aip_model
def deploy_model(config: CPRConfig) -> aiplatform.Endpoint:
"""Deploy the model server to a Vertex Prediction endpoint."""
aiplatform.init(project=config.project_id, location=config.region)
aip_model = aiplatform.Model(model_name=config.model_name)
endpoint = aip_model.deploy(machine_type=config.machine_type)
config.endpoint_name = endpoint.resource_name
config.save()
return endpoint
def probe_prediction(config: CPRConfig, request_path: str) -> None:
"""Send a sample prediction request to the Vertex Prediction endpoint."""
aiplatform.init(project=config.project_id, location=config.region)
aip_endpoint = aiplatform.Endpoint(endpoint_name=config.endpoint_name)
with open(request_path) as f:
logging.info(aip_endpoint.predict(**json.load(f)))
def main(argv: Sequence[str]):
config = CPRConfig()
if pathlib.Path(config.config_file).exists():
config.load()
actions = set(argv[1:])
if "build" in actions:
build_container(config, config.image)
save_model_artifact(config.artifact_local_dir)
if "upload" in actions:
save_model_artifact(config.artifact_gcs_dir)
upload_model(config)
if "deploy" in actions:
deploy_model(config)
if "probe" in actions:
probe_prediction(config, request_path="sample_request.json")
if __name__ == "__main__":
app.run(main)
@@ -1,76 +0,0 @@
# Copyright 2022 Google LLC
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
# https://www.apache.org/licenses/LICENSE-2.0
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import dataclasses
import json
@dataclasses.dataclass
class CPRConfig(object):
"""Configure the build process by editing the default values here.
config_file: File path used to save values in this config. (Some
values, such as the model name, are generated at build time and
depended on by future steps, so saving it allows this script to
deploy the model without re-uploading it, for example.)
base_image: Base Docker image on top of which the model server will
be built. By default, a Debian-based Python 3 image without GPU
support will be used.
image: Name and tag assigned to the built model server image.
artifact_local_dir: Local directory where a copy of the pretrained model weights
will be saved.
region: Google Cloud Region where the model will be uploaded during the
build process.
project_id: Google Cloud project ID.
repository: Name of the Artifact Registry repository where the container
will be uploaded.
artifact_gcs_dir: Location on GCS where a copy of the pretrained model
weights will be uploaded.
model_name: Full resource path of the uploaded model. This is a write-only
field, the value is generated by Vertex AI when the model is uploaded.
endpoint_name: Full resource path of the created endpoint. This is a
write-only field, the value is generated by Vertex AI when the model is
deployed to an endpoint.
machine_type: Machine type to use when deploying the model.
"""
config_file: str = "config.json"
base_image: str = "python:3.10-bullseye"
image: str = "timm_predictor:latest"
artifact_local_dir: str = ""
region: str = "us-central1"
project_id: str = "<your project ID here>"
repository: str = "cpr-images"
artifact_gcs_dir: str = "gs://<your bucket ID here>/timm-vit224/"
model_name: str = ""
endpoint_name: str = ""
machine_type: str = "n1-standard-2"
def save(self):
with open(self.config_file, "w") as f:
json.dump(dataclasses.asdict(self), f, indent=2)
def load(self):
with open(self.config_file) as f:
self.__init__(**json.load(f))
@@ -1,8 +0,0 @@
absl-py==1.1.0
fastapi==0.109.1
uvicorn==0.18.2
timm==0.5.4
smart_open==6.0.0
google-cloud-storage>=1.26.0,<2.0.0dev
google-cloud-aiplatform[prediction]>=1.16.0
File diff suppressed because one or more lines are too long
@@ -1,255 +0,0 @@
"""Test the timm_serving predictor."""
import base64
import json
import logging
import os
import pickle
from typing import List, Dict
from absl import flags
from absl import logging
from absl.testing import absltest
from config import CPRConfig
import fastapi
from google.cloud import aiplatform
from google.cloud.aiplatform import prediction as cpr
import PIL
from timm_serving import predictor
import torch
VIT_SMALL_PARAMS = 22878952
def b64_encode_file(path: str) -> str:
"""Encode a file's contents as base64.
Args:
path: Path to the file.
Returns:
Base64-encoded contents of the file.
"""
with open(path, "rb") as f:
return str(base64.b64encode(f.read()), encoding="utf-8")
def make_instance_dict(
image_paths: List[str], base64_encodings: List[str]
) -> Dict[str, List[str]]:
"""Generate a dictionary similar to a parsed prediction server request.
Args:
image_paths: Paths to image files to include.
base64_encodings: Pre-encoded base64 strings.
Returns:
Dictionary of instances in the format accepted by the preprocessor.
"""
instances = [s for s in base64_encodings]
for path in image_paths:
instances.append(b64_encode_file(path))
return {"instances": instances}
def count_parameters(model: torch.nn.Module):
"""Count the parameters in a Pytorch model.
Args:
model: Pytorch model (nn.Module).
Returns:
Number of parameters in the model.
"""
return sum(p.numel() for p in model.parameters())
class PredictorUnitTests(absltest.TestCase):
"""Unit tests for timm_serving.predictor."""
def setUp(self):
super().setUp()
self.config = CPRConfig()
try:
self.config.load()
except FileNotFoundError:
logging.info("No saved config file found, using default values.")
self.predictor = predictor.TimmPredictor()
def test_load_from_saved_state_dict_ok(self):
self.predictor.load(self.config.artifact_local_dir)
self.assertEqual(count_parameters(self.predictor._model), VIT_SMALL_PARAMS)
def test_load_bad_path(self):
with self.assertRaises(FileNotFoundError):
self.predictor.load("testdata/")
with self.assertRaisesRegex(ValueError, "not a directory"):
self.predictor.load("blah")
def test_load_bad_data(self):
with self.assertRaises(pickle.UnpicklingError):
self.predictor.load("testdata/bad_model_1")
with self.assertRaisesRegex(RuntimeError, "Invalid magic number"):
self.predictor.load("testdata/bad_model_2")
def test_preprocess_ok(self):
self.predictor.load(self.config.artifact_local_dir)
instance_dict = make_instance_dict(
base64_encodings=[],
image_paths=[
"testdata/airplane.jpg",
"testdata/mandrill.tiff",
"testdata/mandrill.tiff",
"testdata/cat_alpha.png",
],
)
result = self.predictor.preprocess(instance_dict)
self.assertEqual(result.size(), torch.Size([4, 3, 224, 224]))
self.assertEqual(result.dtype, torch.float32)
def test_preprocess_no_instances(self):
self.predictor.load(self.config.artifact_local_dir)
with self.assertRaises(fastapi.HTTPException) as ctx:
self.predictor.preprocess({})
self.assertEqual(ctx.exception.status_code, 400)
self.assertRegex(ctx.exception.detail, 'must contain "instances"')
def test_preprocess_wrong_shape_instances(self):
self.predictor.load(self.config.artifact_local_dir)
instance_dict = {"instances": [[b64_encode_file("testdata/mandrill.tiff")]]}
with self.assertRaises(fastapi.HTTPException) as ctx:
self.predictor.preprocess(instance_dict)
self.assertEqual(ctx.exception.status_code, 400)
self.assertRegex(ctx.exception.detail, "not 'list'")
def test_preprocess_bad_base64(self):
self.predictor.load(self.config.artifact_local_dir)
instance_dict = make_instance_dict(base64_encodings=["!@#$"], image_paths=[])
with self.assertRaises(fastapi.HTTPException) as ctx:
self.predictor.preprocess(instance_dict)
self.assertEqual(ctx.exception.status_code, 400)
self.assertRegex(ctx.exception.detail, "[Bb]ase64")
def test_preprocess_not_image_data(self):
self.predictor.load(self.config.artifact_local_dir)
instance_dict = make_instance_dict(
base64_encodings=[], image_paths=["testdata/bad.jpg"]
)
with self.assertRaises(fastapi.HTTPException) as ctx:
self.predictor.preprocess(instance_dict)
self.assertEqual(ctx.exception.status_code, 400)
self.assertRegex(ctx.exception.detail, "image file")
def test_predict_ok(self):
self.predictor.load(self.config.artifact_local_dir)
inputs = torch.zeros(size=[2, 3, 224, 224], dtype=torch.float32)
if torch.cuda.device_count() > 0:
inputs = inputs.cuda()
result = self.predictor.predict(inputs)
self.assertEqual(result.size(), torch.Size([2, 1000]))
self.assertEqual(result.dtype, torch.float32)
def test_postprocess_ok(self):
class_probs = torch.zeros(size=[2, 1000])
class_probs[0, 0] = 1
class_probs[1, 123] = 1
result = self.predictor.postprocess(class_probs)
predictions = result["predictions"]
self.assertLen(predictions[0]["class_names"], 5)
self.assertLen(predictions[0]["indices"], 5)
self.assertLen(predictions[0]["probabilities"], 5)
self.assertLen(predictions[1]["class_names"], 5)
self.assertLen(predictions[1]["indices"], 5)
self.assertLen(predictions[1]["probabilities"], 5)
self.assertContainsSubsequence(predictions[0]["class_names"][0], "tench")
self.assertContainsSubsequence(
predictions[1]["class_names"][0], "spiny lobster"
)
class ServerEndToEndTests(absltest.TestCase):
"""End-to-end tests for the model server, using LocalEndpoint."""
def setUp(self):
super().setUp()
self.config = CPRConfig()
try:
self.config.load()
except FileNotFoundError:
logging.info("No saved config file found, using default values.")
self.local_model = cpr.LocalModel(
serving_container_spec=aiplatform.gapic.ModelContainerSpec(
image_uri=self.config.image
)
)
self.local_endpoint = self.local_model.deploy_to_local_endpoint(
artifact_uri=self.config.artifact_local_dir or os.getcwd()
)
self.local_endpoint.serve()
def tearDown(self):
self.local_endpoint.stop()
super().tearDown()
def test_e2e_healthcheck_ok(self):
health_check_response = self.local_endpoint.run_health_check()
self.assertEqual(health_check_response.status_code, 200)
self.assertEqual(health_check_response.content, b"{}")
def test_e2e_predict_ok(self):
predict_request = json.dumps(
make_instance_dict(
base64_encodings=[],
image_paths=[
"testdata/mandrill.tiff",
],
)
)
response = self.local_endpoint.predict(
request=predict_request, headers={"Content-Type": "application/json"}
)
logging.info(response.content)
self.assertEqual(response.status_code, 200)
predictions = response.json()["predictions"]
self.assertContainsSubsequence(predictions[0]["class_names"][0], "baboon")
def test_e2e_predict_bad_json_returns_400(self):
predict_request = "blah"
response = self.local_endpoint.predict(
request=predict_request, headers={"Content-Type": "application/json"}
)
logging.info(response.content)
self.assertEqual(response.status_code, 400)
def test_e2e_predict_no_instances_returns_400(self):
predict_request = json.dumps({})
response = self.local_endpoint.predict(
request=predict_request, headers={"Content-Type": "application/json"}
)
logging.info(response.content)
self.assertEqual(response.status_code, 400)
def test_e2e_predict_bad_base64_returns_400(self):
predict_request = json.dumps(
make_instance_dict(base64_encodings=["blah"], image_paths=[])
)
response = self.local_endpoint.predict(
request=predict_request, headers={"Content-Type": "application/json"}
)
logging.info(response.content)
self.assertEqual(response.status_code, 400)
def test_e2e_predict_bad_image_returns_400(self):
predict_request = json.dumps(
make_instance_dict(base64_encodings=[], image_paths=["testdata/bad.jpg"])
)
response = self.local_endpoint.predict(
request=predict_request, headers={"Content-Type": "application/json"}
)
logging.info(response.content)
self.assertEqual(response.status_code, 400)
if __name__ == "__main__":
absltest.main()
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# Copyright 2022 Google LLC
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
# https://www.apache.org/licenses/LICENSE-2.0
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Adapts a pretrained TIMM image classification model to the CPR framework.
Documentation for the TIMM (Torch IMage Models) library is here:
https://rwightman.github.io/pytorch-image-models/
Its source can also be found here:
https://github.com/rwightman/pytorch-image-models
"""
import base64
import binascii
import io
import os
from typing import Dict, List, Union
from fastapi import HTTPException
from google.cloud.aiplatform import prediction as cpr
from pathlib import Path
import PIL
import smart_open
import timm
import torch
import torch.nn.functional as F
with open(Path(__file__).parent.absolute().joinpath("imagenet.txt")) as f:
IMAGENET_CLASSES = f.read().splitlines()
class TimmPredictor(cpr.predictor.Predictor):
"""Predictor class for image models based on TIMM."""
TIMM_MODEL_NAME = os.getenv("TIMM_MODEL_NAME", default="vit_small_patch32_224")
WEIGHTS_FILE = "state_dict.pth"
NUM_TOP_CLASSES_TO_RETURN = 5
def __init__(self):
self._cuda = torch.cuda.device_count() > 0
def load(self, artifacts_uri: str = ""):
"""Initializes the model and preprocessing transforms.
Args:
artifacts_uri: Directory where state dict is stored. Can be a
GCS URI or local path.
"""
if artifacts_uri:
artifact_path = os.path.join(artifacts_uri)
if not (os.path.isdir(artifact_path) or artifact_path.startswith("gs://")):
raise ValueError("Provided artifact_uri is not a directory.")
else:
artifact_path = os.getcwd()
artifact_path = os.path.join(artifact_path, self.WEIGHTS_FILE)
with smart_open.open(artifact_path, "rb") as f:
self._model = torch.load(f)
if self._cuda:
self._model.cuda()
config = timm.data.resolve_data_config(model=self.TIMM_MODEL_NAME, args=[])
self._transform = timm.data.create_transform(
is_training=False, use_prefetcher=False, **config
)
def preprocess(self, request_dict: Dict[str, List[str]]) -> torch.Tensor:
"""Performs preprocessing.
By default, the server expects a request body consisting of a valid JSON
object. This will be parsed by the handler before it's evaluated by the
preprocess method.
Args:
request_dict: Parsed request body. We expect that the input consists of
a list of base64-encoded image files under the "instances" key. (Any
image format that PIL.image.open can handle is okay.)
Returns:
torch.Tensor containing the preprocessed images as a batch. If GPU is
available, the result tensor will be stored on GPU.
"""
if "instances" not in request_dict:
raise HTTPException(
status_code=400,
detail='Request must contain "instances" as a top-level key.',
)
tensors = []
for (i, image) in enumerate(request_dict["instances"]):
# We use Base64 encoding to handle image data.
# This is probably the best we can do while still using JSON input.
# Overriding the input format requires building a custom Handler.
try:
image_bytes = base64.b64decode(image, validate=True)
except (binascii.Error, TypeError) as e:
raise HTTPException(
status_code=400,
detail=f"Base64 decoding of the input image at index {i} failed:"
f" {str(e)}",
)
try:
pil_image = PIL.Image.open(io.BytesIO(image_bytes)).convert("RGB")
except PIL.UnidentifiedImageError:
raise HTTPException(
status_code=400,
detail=f"The input image at index {i} could not be identified as an"
" image file.",
)
tensors.append(self._transform(pil_image))
with torch.inference_mode():
result = torch.stack(tensors)
if self._cuda:
result = result.cuda()
return result
def predict(self, instances: torch.Tensor) -> torch.Tensor:
"""Performs prediction.
Args:
instances: torch.Tensor with type torch.float32 and shape
[?, 3, 224, 224], containing the pre-processed input images.
Returns:
Vector of scores with type torch.float32 and shape [?, 1000],
representing the model's estimate of the likelihood that the
input belongs to the Imagenet class with that index.
"""
with torch.inference_mode():
class_scores = self._model(instances)
return class_scores
def postprocess(
self, class_scores: torch.Tensor
) -> Dict[str, List[Dict[str, Union[str, int, float]]]]:
"""Translate the model output into a classification result.
Args:
class_scores: torch.Tensor with type torch.float32 and shape
[?, 1000], containing the scores assigned to each class by
the model.
Returns:
Dictionary containing the list of classification results. Each
classification result contains the probabilities, class names, and
class indices of the classes with the top class scores as reported by
the model.
"""
class_probs = F.softmax(class_scores, dim=1)
top_k = class_probs.topk(self.NUM_TOP_CLASSES_TO_RETURN)
top_k_values = top_k.values.numpy().tolist()
top_k_indices = top_k.indices.numpy().tolist()
predictions = [
dict(
probabilities=values,
indices=indices,
class_names=[IMAGENET_CLASSES[int(class_num)] for class_num in indices],
)
for (values, indices) in zip(top_k_values, top_k_indices)
]
return {"predictions": predictions}
@@ -1,64 +0,0 @@
name: Train linear regression model using scikit learn from CSV
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/ML_frameworks/Scikit_learn/Train_linear_regression_model/from_CSV/component.yaml'}
inputs:
- {name: dataset, type: CSV}
- {name: label_column_name, type: String}
outputs:
- {name: model, type: ScikitLearnPickleModel}
implementation:
container:
image: python:3.9
command:
- sh
- -c
- (PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet --no-warn-script-location
'scikit-learn==1.0.2' 'pandas==1.4.3' || PIP_DISABLE_PIP_VERSION_CHECK=1 python3
-m pip install --quiet --no-warn-script-location 'scikit-learn==1.0.2' 'pandas==1.4.3'
--user) && "$0" "$@"
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def _make_parent_dirs_and_return_path(file_path: str):
import os
os.makedirs(os.path.dirname(file_path), exist_ok=True)
return file_path
def train_linear_regression_model_using_scikit_learn_from_CSV(
dataset_path,
model_path,
label_column_name,
):
import pandas
import pickle
from sklearn import linear_model
df = pandas.read_csv(dataset_path)
model = linear_model.LinearRegression()
model.fit(
X=df.drop(columns=label_column_name),
y=df[label_column_name],
)
with open(model_path, "wb") as f:
pickle.dump(model, f)
import argparse
_parser = argparse.ArgumentParser(prog='Train linear regression model using scikit learn from CSV', description='')
_parser.add_argument("--dataset", dest="dataset_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--label-column-name", dest="label_column_name", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--model", dest="model_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parsed_args = vars(_parser.parse_args())
_outputs = train_linear_regression_model_using_scikit_learn_from_CSV(**_parsed_args)
args:
- --dataset
- {inputPath: dataset}
- --label-column-name
- {inputValue: label_column_name}
- --model
- {outputPath: model}
@@ -1,163 +0,0 @@
name: Train logistic regression model using scikit learn from CSV
description: Train logistic regression model using Scikit-learn
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/ML_frameworks/Scikit_learn/Train_logistic_regression_model/from_CSV/component.yaml'}
inputs:
- {name: dataset, type: CSV}
- {name: label_column_name, type: String}
- {name: penalty, type: String, default: l2, optional: true}
- {name: solver, type: String, default: lbfgs, optional: true}
- {name: max_iterations, type: Integer, default: '100', optional: true}
- {name: multi_class_mode, type: String, default: auto, optional: true}
- {name: random_seed, type: Integer, default: '0', optional: true}
outputs:
- {name: model, type: ScikitLearnPickleModel}
- {name: model_parameters, type: JsonObject}
implementation:
container:
image: python:3.9
command:
- sh
- -c
- (PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet --no-warn-script-location
'scikit-learn==1.0.2' 'pandas==1.4.3' || PIP_DISABLE_PIP_VERSION_CHECK=1 python3
-m pip install --quiet --no-warn-script-location 'scikit-learn==1.0.2' 'pandas==1.4.3'
--user) && "$0" "$@"
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def _make_parent_dirs_and_return_path(file_path: str):
import os
os.makedirs(os.path.dirname(file_path), exist_ok=True)
return file_path
def train_logistic_regression_model_using_scikit_learn_from_CSV(
dataset_path,
model_path,
label_column_name,
penalty = "l2", # l1, l2, elasticnet, none
solver = "lbfgs", # newton-cg, lbfgs, liblinear, sag, saga
max_iterations = 100,
multi_class_mode = "auto", # auto, ovr, multinomial
random_seed = 0,
):
"""Train logistic regression model using Scikit-learn
See https://scikit-learn.org/stable/modules/generated/sklearn.linear_model.LogisticRegression.html
"""
import json
import pandas
import pickle
from sklearn import linear_model
df = pandas.read_csv(dataset_path)
model = linear_model.LogisticRegression(
penalty=penalty,
#dual=False,
#tol=1e-4,
#C=1.0,
#fit_intercept=True,
#intercept_scaling=1,
#class_weight=None,
random_state=random_seed,
solver=solver,
max_iter=max_iterations,
multi_class=multi_class_mode,
#l1_ratio=None,
verbose=1,
)
model_parameters = model.get_params()
model_parameters_json = json.dumps(model_parameters, indent=2)
print("Model parameters:")
print(model_parameters_json)
print()
model.fit(
X=df.drop(columns=label_column_name),
y=df[label_column_name],
)
with open(model_path, "wb") as f:
pickle.dump(model, f)
return (model_parameters_json,)
def _serialize_json(obj) -> str:
if isinstance(obj, str):
return obj
import json
def default_serializer(obj):
if hasattr(obj, 'to_struct'):
return obj.to_struct()
else:
raise TypeError("Object of type '%s' is not JSON serializable and does not have .to_struct() method." % obj.__class__.__name__)
return json.dumps(obj, default=default_serializer, sort_keys=True)
import argparse
_parser = argparse.ArgumentParser(prog='Train logistic regression model using scikit learn from CSV', description='Train logistic regression model using Scikit-learn')
_parser.add_argument("--dataset", dest="dataset_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--label-column-name", dest="label_column_name", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--penalty", dest="penalty", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--solver", dest="solver", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--max-iterations", dest="max_iterations", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--multi-class-mode", dest="multi_class_mode", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--random-seed", dest="random_seed", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--model", dest="model_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parser.add_argument("----output-paths", dest="_output_paths", type=str, nargs=1)
_parsed_args = vars(_parser.parse_args())
_output_files = _parsed_args.pop("_output_paths", [])
_outputs = train_logistic_regression_model_using_scikit_learn_from_CSV(**_parsed_args)
_output_serializers = [
_serialize_json,
]
import os
for idx, output_file in enumerate(_output_files):
try:
os.makedirs(os.path.dirname(output_file))
except OSError:
pass
with open(output_file, 'w') as f:
f.write(_output_serializers[idx](_outputs[idx]))
args:
- --dataset
- {inputPath: dataset}
- --label-column-name
- {inputValue: label_column_name}
- if:
cond: {isPresent: penalty}
then:
- --penalty
- {inputValue: penalty}
- if:
cond: {isPresent: solver}
then:
- --solver
- {inputValue: solver}
- if:
cond: {isPresent: max_iterations}
then:
- --max-iterations
- {inputValue: max_iterations}
- if:
cond: {isPresent: multi_class_mode}
then:
- --multi-class-mode
- {inputValue: multi_class_mode}
- if:
cond: {isPresent: random_seed}
then:
- --random-seed
- {inputValue: random_seed}
- --model
- {outputPath: model}
- '----output-paths'
- {outputPath: model_parameters}
@@ -1,41 +0,0 @@
name: Create PyTorch Model Archive with base handler
inputs:
- {name: Model, type: PyTorchScriptModule}
- {name: Model name, type: String, default: model}
- {name: Model version, type: String, default: "1.0"}
outputs:
- {name: Model archive, type: PyTorchModelArchive}
metadata:
annotations:
author: Alexey Volkov <alexey.volkov@ark-kun.com>
canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/PyTorch/Create_PyTorch_Model_Archive/with_base_handler/component.yaml'
implementation:
container:
image: pytorch/torchserve:0.6.0-cpu
command:
- bash
- -exc
- |
model_path=$0
model_name=$1
model_version=$2
output_model_archive_path=$3
mkdir -p "$(dirname "$output_model_archive_path")"
# TODO: Use the built-in base_handler once my fix is merged: https://github.com/pytorch/serve/pull/1682
echo '
from ts.torch_handler import base_handler
class BaseHandler(base_handler.BaseHandler):
pass
' > base_handler.py # torch-model-archiver needs the handler to have .py extension
torch-model-archiver --model-name "$model_name" --version "$model_version" --serialized-file "$model_path" --handler base_handler.py
# torch-model-archiver does not allow specifying the output path, but always writes to "${model_name}.<format>"
expected_model_archive_path="${model_name}.mar"
mv "$expected_model_archive_path" "$output_model_archive_path"
- {inputPath: Model}
- {inputValue: Model name}
- {inputValue: Model version}
- {outputPath: Model archive}
@@ -1,117 +0,0 @@
name: Create fully connected pytorch network
description: Creates fully-connected network in PyTorch ScriptModule format
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/PyTorch/Create_fully_connected_network/component.yaml'}
inputs:
- {name: input_size, type: Integer}
- {name: hidden_layer_sizes, type: JsonArray, default: '[]', optional: true}
- {name: output_size, type: Integer, default: '1', optional: true}
- {name: activation_name, type: String, default: relu, optional: true}
- {name: output_activation_name, type: String, optional: true}
- {name: random_seed, type: Integer, default: '0', optional: true}
outputs:
- {name: model, type: PyTorchScriptModule}
implementation:
container:
image: pytorch/pytorch:1.7.1-cuda11.0-cudnn8-runtime
command:
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def _make_parent_dirs_and_return_path(file_path: str):
import os
os.makedirs(os.path.dirname(file_path), exist_ok=True)
return file_path
def create_fully_connected_pytorch_network(
input_size,
model_path,
hidden_layer_sizes = [],
output_size = 1,
activation_name = 'relu',
output_activation_name = None,
random_seed = 0,
):
'''Creates fully-connected network in PyTorch ScriptModule format'''
import torch
torch.manual_seed(random_seed)
activation = getattr(torch, activation_name, None) or getattr(torch.nn.functional, activation_name, None)
if not activation:
raise ValueError(f'Activation "{activation_name}" was not found.')
class ActivationLayer(torch.nn.Module):
def forward(self, input):
return activation(input)
layers = []
prev_layer_size = input_size
for layer_size in hidden_layer_sizes:
layer = torch.nn.Linear(prev_layer_size, layer_size)
prev_layer_size = layer_size
layers.append(layer)
layers.append(ActivationLayer())
# Adding the output layer
layers.append(torch.nn.Linear(prev_layer_size, output_size))
# Adding the optional activation after the output layer
if output_activation_name:
output_activation = getattr(torch, output_activation_name, None) or getattr(torch.nn.functional, output_activation_name, None)
class OutputActivationLayer(torch.nn.Module):
def forward(self, input):
return output_activation(input)
layers.append(OutputActivationLayer())
network = torch.nn.Sequential(*layers)
script_module = torch.jit.script(network)
print(script_module)
script_module.save(model_path)
import json
import argparse
_parser = argparse.ArgumentParser(prog='Create fully connected pytorch network', description='Creates fully-connected network in PyTorch ScriptModule format')
_parser.add_argument("--input-size", dest="input_size", type=int, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--hidden-layer-sizes", dest="hidden_layer_sizes", type=json.loads, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--output-size", dest="output_size", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--activation-name", dest="activation_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--output-activation-name", dest="output_activation_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--random-seed", dest="random_seed", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--model", dest="model_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parsed_args = vars(_parser.parse_args())
_outputs = create_fully_connected_pytorch_network(**_parsed_args)
args:
- --input-size
- {inputValue: input_size}
- if:
cond: {isPresent: hidden_layer_sizes}
then:
- --hidden-layer-sizes
- {inputValue: hidden_layer_sizes}
- if:
cond: {isPresent: output_size}
then:
- --output-size
- {inputValue: output_size}
- if:
cond: {isPresent: activation_name}
then:
- --activation-name
- {inputValue: activation_name}
- if:
cond: {isPresent: output_activation_name}
then:
- --output-activation-name
- {inputValue: output_activation_name}
- if:
cond: {isPresent: random_seed}
then:
- --random-seed
- {inputValue: random_seed}
- --model
- {outputPath: model}
@@ -1,209 +0,0 @@
name: Train pytorch model from csv
description: Trains PyTorch model
metadata:
annotations:
author: Alexey Volkov <alexey.volkov@ark-kun.com>
canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/PyTorch/Train_PyTorch_model/from_CSV/component.yaml'
inputs:
- {name: model, type: PyTorchScriptModule}
- {name: training_data, type: CSV}
- {name: label_column_name, type: String}
- {name: loss_function_name, type: String, default: mse_loss, optional: true}
- {name: number_of_epochs, type: Integer, default: '1', optional: true}
- {name: learning_rate, type: Float, default: '0.1', optional: true}
- {name: optimizer_name, type: String, default: Adadelta, optional: true}
- {name: optimizer_parameters, type: JsonObject, optional: true}
- {name: batch_size, type: Integer, default: '32', optional: true}
- {name: batch_log_interval, type: Integer, default: '100', optional: true}
- {name: random_seed, type: Integer, default: '0', optional: true}
outputs:
- {name: trained_model, type: PyTorchScriptModule}
implementation:
container:
image: pytorch/pytorch:1.7.1-cuda11.0-cudnn8-runtime
command:
- sh
- -c
- (PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet --no-warn-script-location
'pandas==1.4.3' || PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet
--no-warn-script-location 'pandas==1.4.3' --user) && "$0" "$@"
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def _make_parent_dirs_and_return_path(file_path: str):
import os
os.makedirs(os.path.dirname(file_path), exist_ok=True)
return file_path
def train_pytorch_model_from_csv(
model_path,
training_data_path,
trained_model_path,
label_column_name,
loss_function_name = 'mse_loss',
number_of_epochs = 1,
learning_rate = 0.1,
optimizer_name = 'Adadelta',
optimizer_parameters = None,
batch_size = 32,
batch_log_interval = 100,
random_seed = 0,
):
'''Trains PyTorch model'''
import pandas
import torch
torch.manual_seed(random_seed)
use_cuda = torch.cuda.is_available()
device = torch.device("cuda" if use_cuda else "cpu")
model = torch.jit.load(model_path)
model.to(device)
model.train()
optimizer_class = getattr(torch.optim, optimizer_name, None)
if not optimizer_class:
raise ValueError(f'Optimizer "{optimizer_name}" was not found.')
optimizer_parameters = optimizer_parameters or {}
optimizer_parameters['lr'] = learning_rate
optimizer = optimizer_class(model.parameters(), **optimizer_parameters)
loss_function = getattr(torch, loss_function_name, None) or getattr(torch.nn, loss_function_name, None) or getattr(torch.nn.functional, loss_function_name, None)
if not loss_function:
raise ValueError(f'Loss function "{loss_function_name}" was not found.')
class CsvDataset(torch.utils.data.Dataset):
def __init__(self, file_path, label_column_name, drop_nan_columns_or_rows = 'columns'):
dataframe = pandas.read_csv(file_path).convert_dtypes()
# Preventing error: default_collate: batch must contain tensors, numpy arrays, numbers, dicts or lists; found object
if drop_nan_columns_or_rows == 'columns':
non_nan_data = dataframe.dropna(axis='columns')
removed_columns = set(dataframe.columns) - set(non_nan_data.columns)
if removed_columns:
print('Skipping columns with NaNs: ' + str(removed_columns))
dataframe = non_nan_data
if drop_nan_columns_or_rows == 'rows':
non_nan_data = dataframe.dropna(axis='index')
number_of_removed_rows = len(dataframe) - len(non_nan_data)
if number_of_removed_rows:
print(f'Skipped {number_of_removed_rows} rows with NaNs.')
dataframe = non_nan_data
numerical_data = dataframe.select_dtypes(include='number')
non_numerical_data = dataframe.select_dtypes(exclude='number')
if not non_numerical_data.empty:
print('Skipping non-number columns:')
print(non_numerical_data.dtypes)
self._dataframe = dataframe
self.labels = numerical_data[[label_column_name]]
self.features = numerical_data.drop(columns=[label_column_name])
def __len__(self):
return len(self._dataframe)
def __getitem__(self, index):
return [self.features.loc[index].to_numpy(dtype='float32'), self.labels.loc[index].to_numpy(dtype='float32')]
dataset = CsvDataset(
file_path=training_data_path,
label_column_name=label_column_name,
)
train_loader = torch.utils.data.DataLoader(
dataset=dataset,
batch_size=batch_size,
shuffle=True,
)
last_full_batch_loss = None
for epoch in range(1, number_of_epochs + 1):
for batch_idx, (data, target) in enumerate(train_loader):
data, target = data.to(device), target.to(device)
optimizer.zero_grad()
output = model(data)
loss = loss_function(output, target)
loss.backward()
optimizer.step()
if len(data) == batch_size:
last_full_batch_loss = loss.item()
if batch_idx % batch_log_interval == 0:
print('Train Epoch: {} [{}/{} ({:.0f}%)]\tLoss: {:.6f}'.format(
epoch, batch_idx * len(data), len(train_loader.dataset),
100. * batch_idx / len(train_loader), loss.item()))
print(f'Training epoch {epoch} completed. Last full batch loss: {last_full_batch_loss:.6f}')
# print(optimizer.state_dict())
model.save(trained_model_path)
import json
import argparse
_parser = argparse.ArgumentParser(prog='Train pytorch model from csv', description='Trains PyTorch model')
_parser.add_argument("--model", dest="model_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--training-data", dest="training_data_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--label-column-name", dest="label_column_name", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--loss-function-name", dest="loss_function_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--number-of-epochs", dest="number_of_epochs", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--learning-rate", dest="learning_rate", type=float, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--optimizer-name", dest="optimizer_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--optimizer-parameters", dest="optimizer_parameters", type=json.loads, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--batch-size", dest="batch_size", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--batch-log-interval", dest="batch_log_interval", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--random-seed", dest="random_seed", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--trained-model", dest="trained_model_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parsed_args = vars(_parser.parse_args())
_outputs = train_pytorch_model_from_csv(**_parsed_args)
args:
- --model
- {inputPath: model}
- --training-data
- {inputPath: training_data}
- --label-column-name
- {inputValue: label_column_name}
- if:
cond: {isPresent: loss_function_name}
then:
- --loss-function-name
- {inputValue: loss_function_name}
- if:
cond: {isPresent: number_of_epochs}
then:
- --number-of-epochs
- {inputValue: number_of_epochs}
- if:
cond: {isPresent: learning_rate}
then:
- --learning-rate
- {inputValue: learning_rate}
- if:
cond: {isPresent: optimizer_name}
then:
- --optimizer-name
- {inputValue: optimizer_name}
- if:
cond: {isPresent: optimizer_parameters}
then:
- --optimizer-parameters
- {inputValue: optimizer_parameters}
- if:
cond: {isPresent: batch_size}
then:
- --batch-size
- {inputValue: batch_size}
- if:
cond: {isPresent: batch_log_interval}
then:
- --batch-log-interval
- {inputValue: batch_log_interval}
- if:
cond: {isPresent: random_seed}
then:
- --random-seed
- {inputValue: random_seed}
- --trained-model
- {outputPath: trained_model}
@@ -1,110 +0,0 @@
name: Xgboost predict on CSV
description: Makes predictions using a trained XGBoost model.
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/XGBoost/Predict/component.yaml'}
inputs:
- {name: data, type: CSV, description: Feature data in Apache Parquet format.}
- {name: model, type: XGBoostModel, description: Trained model in binary XGBoost format.}
- {name: label_column_name, type: String, description: Optional. Name of the column
containing the label data that is excluded during the prediction., optional: true}
outputs:
- {name: predictions, description: Model predictions.}
implementation:
container:
image: python:3.10
command:
- sh
- -c
- (PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet --no-warn-script-location
'xgboost==1.6.1' 'pandas==1.4.3' || PIP_DISABLE_PIP_VERSION_CHECK=1 python3
-m pip install --quiet --no-warn-script-location 'xgboost==1.6.1' 'pandas==1.4.3'
--user) && "$0" "$@"
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def _make_parent_dirs_and_return_path(file_path: str):
import os
os.makedirs(os.path.dirname(file_path), exist_ok=True)
return file_path
def xgboost_predict_on_CSV(
data_path,
model_path,
predictions_path,
label_column_name = None,
):
"""Makes predictions using a trained XGBoost model.
Args:
data_path: Feature data in Apache Parquet format.
model_path: Trained model in binary XGBoost format.
predictions_path: Model predictions.
label_column_name: Optional. Name of the column containing the label data that is excluded during the prediction.
Annotations:
author: Alexey Volkov <alexey.volkov@ark-kun.com>
"""
from pathlib import Path
import numpy
import pandas
import xgboost
df = pandas.read_csv(
data_path,
).convert_dtypes()
print("Evaluation data information:")
df.info(verbose=True)
# Converting column types that XGBoost does not support
for column_name, dtype in df.dtypes.items():
if dtype in ["string", "object"]:
print(f"Treating the {dtype.name} column '{column_name}' as categorical.")
df[column_name] = df[column_name].astype("category")
print(f"Inferred {len(df[column_name].cat.categories)} categories for the '{column_name}' column.")
# Working around the XGBoost issue with nullable floats: https://github.com/dmlc/xgboost/issues/8213
if pandas.api.types.is_float_dtype(dtype):
# Converting from "Float64" to "float64"
df[column_name] = df[column_name].astype(dtype.name.lower())
print("Final evaluation data information:")
df.info(verbose=True)
if label_column_name is not None:
df = df.drop(columns=[label_column_name])
testing_data = xgboost.DMatrix(
data=df,
enable_categorical=True,
)
model = xgboost.Booster(model_file=model_path)
predictions = model.predict(testing_data)
Path(predictions_path).parent.mkdir(parents=True, exist_ok=True)
numpy.savetxt(predictions_path, predictions)
import argparse
_parser = argparse.ArgumentParser(prog='Xgboost predict on CSV', description='Makes predictions using a trained XGBoost model.')
_parser.add_argument("--data", dest="data_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--model", dest="model_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--label-column-name", dest="label_column_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--predictions", dest="predictions_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parsed_args = vars(_parser.parse_args())
_outputs = xgboost_predict_on_CSV(**_parsed_args)
args:
- --data
- {inputPath: data}
- --model
- {inputPath: model}
- if:
cond: {isPresent: label_column_name}
then:
- --label-column-name
- {inputValue: label_column_name}
- --predictions
- {outputPath: predictions}
@@ -1,241 +0,0 @@
name: Train XGBoost model on CSV
description: Trains an XGBoost model.
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/XGBoost/Train/component.yaml'}
inputs:
- {name: training_data, type: CSV, description: Training data in CSV format.}
- {name: label_column_name, type: String, description: Name of the column containing
the label data.}
- {name: starting_model, type: XGBoostModel, description: Existing trained model to
start from (in the binary XGBoost format)., optional: true}
- {name: num_iterations, type: Integer, description: Number of boosting iterations.,
default: '10', optional: true}
- name: objective
type: String
description: |-
The learning task and the corresponding learning objective.
See https://xgboost.readthedocs.io/en/latest/parameter.html#learning-task-parameters
The most common values are:
"reg:squarederror" - Regression with squared loss (default).
"reg:logistic" - Logistic regression.
"binary:logistic" - Logistic regression for binary classification, output probability.
"binary:logitraw" - Logistic regression for binary classification, output score before logistic transformation
"rank:pairwise" - Use LambdaMART to perform pairwise ranking where the pairwise loss is minimized
"rank:ndcg" - Use LambdaMART to perform list-wise ranking where Normalized Discounted Cumulative Gain (NDCG) is maximized
default: reg:squarederror
optional: true
- {name: booster, type: String, description: 'The booster to use. Can be `gbtree`,
`gblinear` or `dart`; `gbtree` and `dart` use tree based models while `gblinear`
uses linear functions.', default: gbtree, optional: true}
- {name: learning_rate, type: Float, description: 'Step size shrinkage used in update
to prevents overfitting. Range: [0,1].', default: '0.3', optional: true}
- name: min_split_loss
type: Float
description: |-
Minimum loss reduction required to make a further partition on a leaf node of the tree.
The larger `min_split_loss` is, the more conservative the algorithm will be. Range: [0,Inf].
default: '0'
optional: true
- name: max_depth
type: Integer
description: |-
Maximum depth of a tree. Increasing this value will make the model more complex and more likely to overfit.
0 indicates no limit on depth. Range: [0,Inf].
default: '6'
optional: true
- {name: booster_params, type: JsonObject, description: 'Parameters for the booster.
See https://xgboost.readthedocs.io/en/latest/parameter.html', optional: true}
outputs:
- {name: model, type: XGBoostModel, description: Trained model in the binary XGBoost
format.}
- {name: model_config, type: XGBoostModelConfig, description: The internal parameter
configuration of Booster as a JSON string.}
implementation:
container:
image: python:3.10
command:
- sh
- -c
- (PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet --no-warn-script-location
'xgboost==1.6.1' 'pandas==1.4.3' || PIP_DISABLE_PIP_VERSION_CHECK=1 python3
-m pip install --quiet --no-warn-script-location 'xgboost==1.6.1' 'pandas==1.4.3'
--user) && "$0" "$@"
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def _make_parent_dirs_and_return_path(file_path: str):
import os
os.makedirs(os.path.dirname(file_path), exist_ok=True)
return file_path
def train_XGBoost_model_on_CSV(
training_data_path,
model_path,
model_config_path,
label_column_name,
starting_model_path = None,
num_iterations = 10,
# Booster parameters
objective = "reg:squarederror",
booster = "gbtree",
learning_rate = 0.3,
min_split_loss = 0,
max_depth = 6,
booster_params = None,
):
"""Trains an XGBoost model.
Args:
training_data_path: Training data in CSV format.
model_path: Trained model in the binary XGBoost format.
model_config_path: The internal parameter configuration of Booster as a JSON string.
starting_model_path: Existing trained model to start from (in the binary XGBoost format).
label_column_name: Name of the column containing the label data.
num_iterations: Number of boosting iterations.
booster_params: Parameters for the booster. See https://xgboost.readthedocs.io/en/latest/parameter.html
objective: The learning task and the corresponding learning objective.
See https://xgboost.readthedocs.io/en/latest/parameter.html#learning-task-parameters
The most common values are:
"reg:squarederror" - Regression with squared loss (default).
"reg:logistic" - Logistic regression.
"binary:logistic" - Logistic regression for binary classification, output probability.
"binary:logitraw" - Logistic regression for binary classification, output score before logistic transformation
"rank:pairwise" - Use LambdaMART to perform pairwise ranking where the pairwise loss is minimized
"rank:ndcg" - Use LambdaMART to perform list-wise ranking where Normalized Discounted Cumulative Gain (NDCG) is maximized
booster: The booster to use. Can be `gbtree`, `gblinear` or `dart`; `gbtree` and `dart` use tree based models while `gblinear` uses linear functions.
learning_rate: Step size shrinkage used in update to prevents overfitting. Range: [0,1].
min_split_loss: Minimum loss reduction required to make a further partition on a leaf node of the tree.
The larger `min_split_loss` is, the more conservative the algorithm will be. Range: [0,Inf].
max_depth: Maximum depth of a tree. Increasing this value will make the model more complex and more likely to overfit.
0 indicates no limit on depth. Range: [0,Inf].
Annotations:
author: Alexey Volkov <alexey.volkov@ark-kun.com>
"""
import pandas
import xgboost
df = pandas.read_csv(
training_data_path,
).convert_dtypes()
print("Training data information:")
df.info(verbose=True)
# Converting column types that XGBoost does not support
for column_name, dtype in df.dtypes.items():
if dtype in ["string", "object"]:
print(f"Treating the {dtype.name} column '{column_name}' as categorical.")
df[column_name] = df[column_name].astype("category")
print(f"Inferred {len(df[column_name].cat.categories)} categories for the '{column_name}' column.")
# Working around the XGBoost issue with nullable floats: https://github.com/dmlc/xgboost/issues/8213
if pandas.api.types.is_float_dtype(dtype):
# Converting from "Float64" to "float64"
df[column_name] = df[column_name].astype(dtype.name.lower())
print()
print("Final training data information:")
df.info(verbose=True)
training_data = xgboost.DMatrix(
data=df.drop(columns=[label_column_name]),
label=df[[label_column_name]],
enable_categorical=True,
)
booster_params = booster_params or {}
booster_params.setdefault("objective", objective)
booster_params.setdefault("booster", booster)
booster_params.setdefault("learning_rate", learning_rate)
booster_params.setdefault("min_split_loss", min_split_loss)
booster_params.setdefault("max_depth", max_depth)
starting_model = None
if starting_model_path:
starting_model = xgboost.Booster(model_file=starting_model_path)
print()
print("Training the model:")
model = xgboost.train(
params=booster_params,
dtrain=training_data,
num_boost_round=num_iterations,
xgb_model=starting_model,
evals=[(training_data, "training_data")],
)
# Saving the model in binary format
model.save_model(model_path)
model_config_str = model.save_config()
with open(model_config_path, "w") as model_config_file:
model_config_file.write(model_config_str)
import json
import argparse
_parser = argparse.ArgumentParser(prog='Train XGBoost model on CSV', description='Trains an XGBoost model.')
_parser.add_argument("--training-data", dest="training_data_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--label-column-name", dest="label_column_name", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--starting-model", dest="starting_model_path", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--num-iterations", dest="num_iterations", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--objective", dest="objective", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--booster", dest="booster", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--learning-rate", dest="learning_rate", type=float, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--min-split-loss", dest="min_split_loss", type=float, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--max-depth", dest="max_depth", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--booster-params", dest="booster_params", type=json.loads, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--model", dest="model_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--model-config", dest="model_config_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parsed_args = vars(_parser.parse_args())
_outputs = train_XGBoost_model_on_CSV(**_parsed_args)
args:
- --training-data
- {inputPath: training_data}
- --label-column-name
- {inputValue: label_column_name}
- if:
cond: {isPresent: starting_model}
then:
- --starting-model
- {inputPath: starting_model}
- if:
cond: {isPresent: num_iterations}
then:
- --num-iterations
- {inputValue: num_iterations}
- if:
cond: {isPresent: objective}
then:
- --objective
- {inputValue: objective}
- if:
cond: {isPresent: booster}
then:
- --booster
- {inputValue: booster}
- if:
cond: {isPresent: learning_rate}
then:
- --learning-rate
- {inputValue: learning_rate}
- if:
cond: {isPresent: min_split_loss}
then:
- --min-split-loss
- {inputValue: min_split_loss}
- if:
cond: {isPresent: max_depth}
then:
- --max-depth
- {inputValue: max_depth}
- if:
cond: {isPresent: booster_params}
then:
- --booster-params
- {inputValue: booster_params}
- --model
- {outputPath: model}
- --model-config
- {outputPath: model_config}
@@ -1,204 +0,0 @@
name: Split rows into subsets
description: Splits the data table according to the split fractions.
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/dataset_manipulation/Split_rows_into_subsets/in_CSV/component.yaml'}
inputs:
- {name: table, type: CSV}
- {name: fraction_1, type: Float, description: 'The proportion of the lines to put
into the 1st split. Range: [0, 1]'}
- name: fraction_2
type: Float
description: |-
The proportion of the lines to put into the 2nd split. Range: [0, 1]
If fraction_2 is not specified, then fraction_2 = 1 - fraction_1.
The remaining lines go to the 3rd split (if any).
optional: true
- {name: random_seed, type: Integer, default: '0', optional: true}
outputs:
- {name: split_1, type: CSV}
- {name: split_2, type: CSV}
- {name: split_3, type: CSV}
- {name: split_1_count, type: Integer}
- {name: split_2_count, type: Integer}
- {name: split_3_count, type: Integer}
implementation:
container:
image: python:3.9
command:
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def _make_parent_dirs_and_return_path(file_path: str):
import os
os.makedirs(os.path.dirname(file_path), exist_ok=True)
return file_path
def split_rows_into_subsets(
table_path,
split_1_path,
split_2_path,
split_3_path,
fraction_1,
fraction_2 = None,
random_seed = 0,
):
"""Splits the data table according to the split fractions.
Args:
fraction_1: The proportion of the lines to put into the 1st split. Range: [0, 1]
fraction_2: The proportion of the lines to put into the 2nd split. Range: [0, 1]
If fraction_2 is not specified, then fraction_2 = 1 - fraction_1.
The remaining lines go to the 3rd split (if any).
"""
import random
random.seed(random_seed)
SHUFFLE_BUFFER_SIZE = 10000
num_splits = 3
if fraction_1 < 0 or fraction_1 > 1:
raise ValueError("fraction_1 must be in between 0 and 1.")
if fraction_2 is None:
fraction_2 = 1 - fraction_1
if fraction_2 < 0 or fraction_2 > 1:
raise ValueError("fraction_2 must be in between 0 and 1.")
fraction_3 = 1 - fraction_1 - fraction_2
fractions = [
fraction_1,
fraction_2,
fraction_3,
]
assert sum(fractions) == 1
written_line_counts = [0] * num_splits
output_files = [
open(split_1_path, "wb"),
open(split_2_path, "wb"),
open(split_3_path, "wb"),
]
with open(table_path, "rb") as input_file:
# Writing the headers
header_line = input_file.readline()
for output_file in output_files:
output_file.write(header_line)
while True:
line_buffer = []
for i in range(SHUFFLE_BUFFER_SIZE):
line = input_file.readline()
if not line:
break
line_buffer.append(line)
# We need to exactly partition the lines between the output files
# To overcome possible systematic bias, we could calculate the total numbers
# of lines written to each file and take that into account.
num_read_lines = len(line_buffer)
number_of_lines_for_files = [0] * num_splits
# List that will have the index of the destination file for each line
file_index_for_line = []
remaining_lines = num_read_lines
remaining_fraction = 1
for i in range(num_splits):
number_of_lines_for_file = (
round(remaining_lines * (fractions[i] / remaining_fraction))
if remaining_fraction > 0
else 0
)
number_of_lines_for_files[i] = number_of_lines_for_file
remaining_lines -= number_of_lines_for_file
remaining_fraction -= fractions[i]
file_index_for_line.extend([i] * number_of_lines_for_file)
assert remaining_lines == 0, f"{remaining_lines}"
assert len(file_index_for_line) == num_read_lines
random.shuffle(file_index_for_line)
for i in range(num_read_lines):
output_files[file_index_for_line[i]].write(line_buffer[i])
written_line_counts[file_index_for_line[i]] += 1
# Exit if the file ended before we were able to fully fill the buffer
if len(line_buffer) != SHUFFLE_BUFFER_SIZE:
break
for output_file in output_files:
output_file.close()
return written_line_counts
def _serialize_int(int_value: int) -> str:
if isinstance(int_value, str):
return int_value
if not isinstance(int_value, int):
raise TypeError('Value "{}" has type "{}" instead of int.'.format(str(int_value), str(type(int_value))))
return str(int_value)
import argparse
_parser = argparse.ArgumentParser(prog='Split rows into subsets', description='Splits the data table according to the split fractions.')
_parser.add_argument("--table", dest="table_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--fraction-1", dest="fraction_1", type=float, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--fraction-2", dest="fraction_2", type=float, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--random-seed", dest="random_seed", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--split-1", dest="split_1_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--split-2", dest="split_2_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--split-3", dest="split_3_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parser.add_argument("----output-paths", dest="_output_paths", type=str, nargs=3)
_parsed_args = vars(_parser.parse_args())
_output_files = _parsed_args.pop("_output_paths", [])
_outputs = split_rows_into_subsets(**_parsed_args)
_output_serializers = [
_serialize_int,
_serialize_int,
_serialize_int,
]
import os
for idx, output_file in enumerate(_output_files):
try:
os.makedirs(os.path.dirname(output_file))
except OSError:
pass
with open(output_file, 'w') as f:
f.write(_output_serializers[idx](_outputs[idx]))
args:
- --table
- {inputPath: table}
- --fraction-1
- {inputValue: fraction_1}
- if:
cond: {isPresent: fraction_2}
then:
- --fraction-2
- {inputValue: fraction_2}
- if:
cond: {isPresent: random_seed}
then:
- --random-seed
- {inputValue: random_seed}
- --split-1
- {outputPath: split_1}
- --split-2
- {outputPath: split_2}
- --split-3
- {outputPath: split_3}
- '----output-paths'
- {outputPath: split_1_count}
- {outputPath: split_2_count}
- {outputPath: split_3_count}
@@ -1,241 +0,0 @@
name: Deploy model to endpoint for Google Cloud Vertex AI Model
description: Deploys Google Cloud Vertex AI Model to a Google Cloud Vertex AI Endpoint.
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/KFPv2_hell/components/google-cloud/Vertex_AI/Models/Deploy_to_endpoint/workaround_for_buggy_KFPv2_compiler/component.yaml'}
inputs:
- {name: model_name, type: String, description: Full resource name of a Google Cloud
Vertex AI Model}
- name: endpoint_name
type: String
description: |-
Optional. Full name of Google Cloud Vertex Endpoint. A new
endpoint is created if the name is not passed.
optional: true
- name: machine_type
type: String
description: |-
The type of the machine. See the [list of machine types
supported for prediction
](https://cloud.google.com/vertex-ai/docs/predictions/configure-compute#machine-types).
Defaults to "n1-standard-2"
default: n1-standard-2
optional: true
- name: min_replica_count
type: Integer
description: |-
Optional. The minimum number of machine replicas this deployed
model will be always deployed on. If traffic against it increases,
it may dynamically be deployed onto more replicas, and as traffic
decreases, some of these extra replicas may be freed.
default: '1'
optional: true
- name: max_replica_count
type: Integer
description: |-
Optional. The maximum number of replicas this deployed model may
be deployed on when the traffic against it increases. If requested
value is too large, the deployment will error, but if deployment
succeeds then the ability to scale the model to that many replicas
is guaranteed (barring service outages). If traffic against the
deployed model increases beyond what its replicas at maximum may
handle, a portion of the traffic will be dropped. If this value
is not provided, the smaller value of min_replica_count or 1 will
be used.
default: '1'
optional: true
- name: accelerator_type
type: String
description: |-
Optional. Hardware accelerator type. Must also set accelerator_count if used.
One of ACCELERATOR_TYPE_UNSPECIFIED, NVIDIA_TESLA_K80, NVIDIA_TESLA_P100,
NVIDIA_TESLA_V100, NVIDIA_TESLA_P4, NVIDIA_TESLA_T4
optional: true
- {name: accelerator_count, type: Integer, description: Optional. The number of accelerators
to attach to a worker replica., optional: true}
outputs:
- {name: endpoint_name, type: String}
- {name: endpoint_dict, type: JsonObject}
implementation:
container:
image: python:3.9
command:
- sh
- -c
- (PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet --no-warn-script-location
'google-cloud-aiplatform==1.7.0' || PIP_DISABLE_PIP_VERSION_CHECK=1 python3
-m pip install --quiet --no-warn-script-location 'google-cloud-aiplatform==1.7.0'
--user) && "$0" "$@"
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def deploy_model_to_endpoint_for_Google_Cloud_Vertex_AI_Model(
model_name,
endpoint_name = None,
machine_type = "n1-standard-2",
min_replica_count = 1,
max_replica_count = 1,
accelerator_type = None,
accelerator_count = None,
#
# Uncomment when anyone requests these:
# deployed_model_display_name: str = None,
# traffic_percentage: int = 0,
# traffic_split: dict = None,
# service_account: str = None,
# explanation_metadata: "google.cloud.aiplatform_v1.types.explanation_metadata.ExplanationMetadata" = None,
# explanation_parameters: "google.cloud.aiplatform_v1.types.explanation.ExplanationParameters" = None,
#
# encryption_spec_key_name: str = None,
):
"""Deploys Google Cloud Vertex AI Model to a Google Cloud Vertex AI Endpoint.
Args:
model_name: Full resource name of a Google Cloud Vertex AI Model
endpoint_name: Optional. Full name of Google Cloud Vertex Endpoint. A new
endpoint is created if the name is not passed.
machine_type: The type of the machine. See the [list of machine types
supported for prediction
](https://cloud.google.com/vertex-ai/docs/predictions/configure-compute#machine-types).
Defaults to "n1-standard-2"
min_replica_count (int):
Optional. The minimum number of machine replicas this deployed
model will be always deployed on. If traffic against it increases,
it may dynamically be deployed onto more replicas, and as traffic
decreases, some of these extra replicas may be freed.
max_replica_count (int):
Optional. The maximum number of replicas this deployed model may
be deployed on when the traffic against it increases. If requested
value is too large, the deployment will error, but if deployment
succeeds then the ability to scale the model to that many replicas
is guaranteed (barring service outages). If traffic against the
deployed model increases beyond what its replicas at maximum may
handle, a portion of the traffic will be dropped. If this value
is not provided, the smaller value of min_replica_count or 1 will
be used.
accelerator_type (str):
Optional. Hardware accelerator type. Must also set accelerator_count if used.
One of ACCELERATOR_TYPE_UNSPECIFIED, NVIDIA_TESLA_K80, NVIDIA_TESLA_P100,
NVIDIA_TESLA_V100, NVIDIA_TESLA_P4, NVIDIA_TESLA_T4
accelerator_count (int):
Optional. The number of accelerators to attach to a worker replica.
"""
import json
from google.cloud import aiplatform
model = aiplatform.Model(model_name=model_name)
if endpoint_name:
endpoint = aiplatform.Endpoint(endpoint_name=endpoint_name)
else:
endpoint_display_name = model.display_name[:118] + "_endpoint"
endpoint = aiplatform.Endpoint.create(
display_name=endpoint_display_name,
project=model.project,
location=model.location,
# encryption_spec_key_name=encryption_spec_key_name,
labels={"component-source": "github-com-ark-kun-pipeline-components"},
)
endpoint = model.deploy(
endpoint=endpoint,
# deployed_model_display_name=deployed_model_display_name,
machine_type=machine_type,
min_replica_count=min_replica_count,
max_replica_count=max_replica_count,
accelerator_type=accelerator_type,
accelerator_count=accelerator_count,
# service_account=service_account,
# explanation_metadata=explanation_metadata,
# explanation_parameters=explanation_parameters,
# encryption_spec_key_name=encryption_spec_key_name,
)
endpoint_json = json.dumps(endpoint.to_dict(), indent=2)
print(endpoint_json)
return (endpoint.resource_name, endpoint_json)
def _serialize_json(obj) -> str:
if isinstance(obj, str):
return obj
import json
def default_serializer(obj):
if hasattr(obj, 'to_struct'):
return obj.to_struct()
else:
raise TypeError("Object of type '%s' is not JSON serializable and does not have .to_struct() method." % obj.__class__.__name__)
return json.dumps(obj, default=default_serializer, sort_keys=True)
def _serialize_str(str_value: str) -> str:
if not isinstance(str_value, str):
raise TypeError('Value "{}" has type "{}" instead of str.'.format(str(str_value), str(type(str_value))))
return str_value
import argparse
_parser = argparse.ArgumentParser(prog='Deploy model to endpoint for Google Cloud Vertex AI Model', description='Deploys Google Cloud Vertex AI Model to a Google Cloud Vertex AI Endpoint.')
_parser.add_argument("--model-name", dest="model_name", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--endpoint-name", dest="endpoint_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--machine-type", dest="machine_type", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--min-replica-count", dest="min_replica_count", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--max-replica-count", dest="max_replica_count", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--accelerator-type", dest="accelerator_type", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--accelerator-count", dest="accelerator_count", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("----output-paths", dest="_output_paths", type=str, nargs=2)
_parsed_args = vars(_parser.parse_args())
_output_files = _parsed_args.pop("_output_paths", [])
_outputs = deploy_model_to_endpoint_for_Google_Cloud_Vertex_AI_Model(**_parsed_args)
_output_serializers = [
_serialize_str,
_serialize_json,
]
import os
for idx, output_file in enumerate(_output_files):
try:
os.makedirs(os.path.dirname(output_file))
except OSError:
pass
with open(output_file, 'w') as f:
f.write(_output_serializers[idx](_outputs[idx]))
args:
- --model-name
- {inputValue: model_name}
- if:
cond: {isPresent: endpoint_name}
then:
- --endpoint-name
- {inputValue: endpoint_name}
- if:
cond: {isPresent: machine_type}
then:
- --machine-type
- {inputValue: machine_type}
- if:
cond: {isPresent: min_replica_count}
then:
- --min-replica-count
- {inputValue: min_replica_count}
- if:
cond: {isPresent: max_replica_count}
then:
- --max-replica-count
- {inputValue: max_replica_count}
- if:
cond: {isPresent: accelerator_type}
then:
- --accelerator-type
- {inputValue: accelerator_type}
- if:
cond: {isPresent: accelerator_count}
then:
- --accelerator-count
- {inputValue: accelerator_count}
- '----output-paths'
- {outputPath: endpoint_name}
- {outputPath: endpoint_dict}
@@ -1,297 +0,0 @@
name: Upload PyTorch model archive to Google Cloud Vertex AI
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/KFPv2_hell/components/google-cloud/Vertex_AI/Models/Upload_PyTorch_model_archive/workaround_for_buggy_KFPv2_compiler/component.yaml'}
inputs:
- {name: model_archive, type: PyTorchModelArchive}
- {name: torchserve_version, type: String, default: 0.6.0, optional: true}
- name: use_gpu
type: Boolean
default: "False"
optional: true
- {name: display_name, type: String, optional: true}
- {name: description, type: String, optional: true}
- {name: project, type: String, optional: true}
- {name: location, type: String, optional: true}
- {name: labels, type: JsonObject, optional: true}
- {name: staging_bucket, type: String, optional: true}
outputs:
- {name: model_name, type: String}
- {name: model_dict, type: JsonObject}
implementation:
container:
image: python:3.9
command:
- sh
- -c
- (PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet --no-warn-script-location
'google-cloud-aiplatform==1.13.1' 'google-cloud-build==3.8.3' || PIP_DISABLE_PIP_VERSION_CHECK=1
python3 -m pip install --quiet --no-warn-script-location 'google-cloud-aiplatform==1.13.1'
'google-cloud-build==3.8.3' --user) && "$0" "$@"
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def upload_PyTorch_model_archive_to_Google_Cloud_Vertex_AI(
model_archive_path,
torchserve_version = "0.6.0",
use_gpu = False,
display_name = None,
description = None,
# Uncomment when anyone requests these:
# instance_schema_uri: str = None,
# parameters_schema_uri: str = None,
# prediction_schema_uri: str = None,
# explanation_metadata: "google.cloud.aiplatform_v1.types.explanation_metadata.ExplanationMetadata" = None,
# explanation_parameters: "google.cloud.aiplatform_v1.types.explanation.ExplanationParameters" = None,
project = None,
location = None,
labels = None,
# encryption_spec_key_name: str = None,
staging_bucket = None,
):
import json
import os
from google.cloud import aiplatform
if not location:
location = os.environ.get("CLOUD_ML_REGION")
if not labels:
labels = {}
labels["component-source"] = "github-com-ark-kun-pipeline-components"
container_image_tag = torchserve_version + "-" + ("gpu" if use_gpu else "cpu")
container_image_uri = f"pytorch/torchserve:{container_image_tag}"
# Vertex Endpoints refuse to support non-Google container registries.
# We have to work around this to reduce user frustration
# TODO: Remove this code when Vertex Endpoints service starts supporting other container registries.
def copy_container_image(
src_container_image_uri,
dst_container_image_uri,
project_id,
):
from google.cloud.devtools import cloudbuild
from google import protobuf
build_client = cloudbuild.CloudBuildClient()
build_config = cloudbuild.Build(
images=[dst_container_image_uri],
steps=[
cloudbuild.BuildStep(
name="gcr.io/cloud-builders/docker",
entrypoint="bash",
args=[
"-exc",
'docker pull --quiet "$0" && docker tag "$0" "$1"',
src_container_image_uri,
dst_container_image_uri,
],
),
],
timeout=protobuf.duration_pb2.Duration(
seconds=1800,
),
)
build_operation = build_client.create_build(
project_id=project_id,
build=build_config,
)
try:
result = build_operation.result()
except:
print(f"Logs are available at [{build_operation.metadata.build.log_url}].")
raise
return result
project_id = aiplatform.initializer.global_config.project
mirrored_container_uri = f"gcr.io/{project_id}/container_mirror/{container_image_uri}"
# FIX: Only mirror when image does not exist
# docker does is unable to get the registry data from inside container (it cannot connecto to docker socket):
# docker.errors.DockerException: Error while fetching server API version: ('Connection aborted.', FileNotFoundError(2, 'No such file or directory'))
# import docker
# try:
# docker_client = docker.from_env()
# docker_client.images.get_registry_data(mirrored_container_uri)
# except docker.errors.NotFound:
if True:
print(f"Mirroring {container_image_uri} to {mirrored_container_uri}")
copy_container_image(
src_container_image_uri=container_image_uri,
dst_container_image_uri=mirrored_container_uri,
project_id=project_id,
)
container_image_uri = mirrored_container_uri
# End of container image mirroring code
model_archive_file_name = os.path.basename(model_archive_path)
model_archive_dir = os.path.dirname(model_archive_path)
model = aiplatform.Model.upload(
# FIX: Use public image or mirror the official image
#serving_container_image_uri="gcr.io/avolkov-31337/mirror/pytorch/torchserve",
serving_container_image_uri=container_image_uri,
artifact_uri=model_archive_dir,
serving_container_command=[
"bash",
"-exc",
'''
model_archive_uri="$0"
#model_archive_local_path=$(mktemp --suffix ".mar")
# For some reason the model must already be inside the model-store directory.
model_archive_local_path=./model-store/model.mar
# Downloading the model archive from GCS
# TODO: Fix gsutil bugs (requires project ID, has auth issues) and use gsutil instead.
# gsutil cp "$model_archive_uri" "$model_archive_local_path"
pip install google-cloud-storage
python -c '
import sys
from google.cloud import storage
model_archive_uri = sys.argv[1]
model_archive_local_path = sys.argv[2]
storage_client = storage.Client()
blob = storage.Blob.from_string(uri=model_archive_uri, client=storage_client)
blob.download_to_filename(filename=model_archive_local_path)
' "$model_archive_uri" "$model_archive_local_path"
#Note: config.properties is owned by root. Our user is not root.
echo "
service_envelope=json
# Needed for external access
inference_address=http://0.0.0.0:8080
management_address=http://0.0.0.0:8081
" > config2.properties
torchserve --start --foreground --no-config-snapshots --models main-model="$model_archive_local_path" --model-store ./model-store/ --ts-config config2.properties
''',
"$(AIP_STORAGE_URI)/" + model_archive_file_name,
],
serving_container_predict_route="/predictions/main-model",
#serving_container_predict_route="/v1/models/main-model:predict",
serving_container_health_route="/ping",
serving_container_ports=[8080],
display_name=display_name,
description=description,
# instance_schema_uri=instance_schema_uri,
# parameters_schema_uri=parameters_schema_uri,
# prediction_schema_uri=prediction_schema_uri,
# explanation_metadata=explanation_metadata,
# explanation_parameters=explanation_parameters,
project=project,
location=location,
labels=labels,
# encryption_spec_key_name=encryption_spec_key_name,
staging_bucket=staging_bucket,
)
model_json = json.dumps(model.to_dict(), indent=2)
print(model_json)
return (model.resource_name, model_json)
def _deserialize_bool(s) -> bool:
from distutils.util import strtobool
return strtobool(s) == 1
def _serialize_json(obj) -> str:
if isinstance(obj, str):
return obj
import json
def default_serializer(obj):
if hasattr(obj, 'to_struct'):
return obj.to_struct()
else:
raise TypeError("Object of type '%s' is not JSON serializable and does not have .to_struct() method." % obj.__class__.__name__)
return json.dumps(obj, default=default_serializer, sort_keys=True)
def _serialize_str(str_value: str) -> str:
if not isinstance(str_value, str):
raise TypeError('Value "{}" has type "{}" instead of str.'.format(str(str_value), str(type(str_value))))
return str_value
import json
import argparse
_parser = argparse.ArgumentParser(prog='Upload PyTorch model archive to Google Cloud Vertex AI', description='')
_parser.add_argument("--model-archive", dest="model_archive_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--torchserve-version", dest="torchserve_version", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--use-gpu", dest="use_gpu", type=_deserialize_bool, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--display-name", dest="display_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--description", dest="description", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--project", dest="project", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--location", dest="location", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--labels", dest="labels", type=json.loads, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--staging-bucket", dest="staging_bucket", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("----output-paths", dest="_output_paths", type=str, nargs=2)
_parsed_args = vars(_parser.parse_args())
_output_files = _parsed_args.pop("_output_paths", [])
_outputs = upload_PyTorch_model_archive_to_Google_Cloud_Vertex_AI(**_parsed_args)
_output_serializers = [
_serialize_str,
_serialize_json,
]
import os
for idx, output_file in enumerate(_output_files):
try:
os.makedirs(os.path.dirname(output_file))
except OSError:
pass
with open(output_file, 'w') as f:
f.write(_output_serializers[idx](_outputs[idx]))
args:
- --model-archive
- {inputPath: model_archive}
- if:
cond: {isPresent: torchserve_version}
then:
- --torchserve-version
- {inputValue: torchserve_version}
- if:
cond: {isPresent: use_gpu}
then:
- --use-gpu
- {inputValue: use_gpu}
- if:
cond: {isPresent: display_name}
then:
- --display-name
- {inputValue: display_name}
- if:
cond: {isPresent: description}
then:
- --description
- {inputValue: description}
- if:
cond: {isPresent: project}
then:
- --project
- {inputValue: project}
- if:
cond: {isPresent: location}
then:
- --location
- {inputValue: location}
- if:
cond: {isPresent: labels}
then:
- --labels
- {inputValue: labels}
- if:
cond: {isPresent: staging_bucket}
then:
- --staging-bucket
- {inputValue: staging_bucket}
- '----output-paths'
- {outputPath: model_name}
- {outputPath: model_dict}
@@ -1,181 +0,0 @@
name: Upload Scikit learn pickle model to Google Cloud Vertex AI
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/KFPv2_hell/components/google-cloud/Vertex_AI/Models/Upload_Scikit-learn_pickle_model/workaround_for_buggy_KFPv2_compiler/component.yaml'}
inputs:
- {name: model, type: ScikitLearnPickleModel}
- {name: sklearn_version, type: String, optional: true}
- {name: display_name, type: String, optional: true}
- {name: description, type: String, optional: true}
- {name: project, type: String, optional: true}
- {name: location, type: String, optional: true}
- {name: labels, type: JsonObject, optional: true}
- {name: staging_bucket, type: String, optional: true}
outputs:
- {name: model_name, type: String}
- {name: model_dict, type: JsonObject}
implementation:
container:
image: python:3.9
command:
- sh
- -c
- (PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet --no-warn-script-location
'google-cloud-aiplatform==1.16.0' || PIP_DISABLE_PIP_VERSION_CHECK=1 python3
-m pip install --quiet --no-warn-script-location 'google-cloud-aiplatform==1.16.0'
--user) && "$0" "$@"
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def upload_Scikit_learn_pickle_model_to_Google_Cloud_Vertex_AI(
model_path,
sklearn_version = None,
display_name = None,
description = None,
# Uncomment when anyone requests these:
# instance_schema_uri: str = None,
# parameters_schema_uri: str = None,
# prediction_schema_uri: str = None,
# explanation_metadata: "google.cloud.aiplatform_v1.types.explanation_metadata.ExplanationMetadata" = None,
# explanation_parameters: "google.cloud.aiplatform_v1.types.explanation.ExplanationParameters" = None,
project = None,
location = None,
labels = None,
# encryption_spec_key_name: str = None,
staging_bucket = None,
):
import json
import os
import shutil
import tempfile
from google.cloud import aiplatform
if not location:
location = os.environ.get("CLOUD_ML_REGION")
if not labels:
labels = {}
labels["component-source"] = "github-com-ark-kun-pipeline-components"
# The serving container decides the model type based on the model file extension.
# So we need to rename the mode file (e.g. /tmp/inputs/model/data) to *.pkl
_, renamed_model_path = tempfile.mkstemp(suffix=".pkl")
shutil.copyfile(src=model_path, dst=renamed_model_path)
model = aiplatform.Model.upload_scikit_learn_model_file(
model_file_path=renamed_model_path,
sklearn_version=sklearn_version,
display_name=display_name,
description=description,
# instance_schema_uri=instance_schema_uri,
# parameters_schema_uri=parameters_schema_uri,
# prediction_schema_uri=prediction_schema_uri,
# explanation_metadata=explanation_metadata,
# explanation_parameters=explanation_parameters,
project=project,
location=location,
labels=labels,
# encryption_spec_key_name=encryption_spec_key_name,
staging_bucket=staging_bucket,
)
model_json = json.dumps(model.to_dict(), indent=2)
print(model_json)
return (model.resource_name, model_json)
def _serialize_json(obj) -> str:
if isinstance(obj, str):
return obj
import json
def default_serializer(obj):
if hasattr(obj, 'to_struct'):
return obj.to_struct()
else:
raise TypeError("Object of type '%s' is not JSON serializable and does not have .to_struct() method." % obj.__class__.__name__)
return json.dumps(obj, default=default_serializer, sort_keys=True)
def _serialize_str(str_value: str) -> str:
if not isinstance(str_value, str):
raise TypeError('Value "{}" has type "{}" instead of str.'.format(str(str_value), str(type(str_value))))
return str_value
import json
import argparse
_parser = argparse.ArgumentParser(prog='Upload Scikit learn pickle model to Google Cloud Vertex AI', description='')
_parser.add_argument("--model", dest="model_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--sklearn-version", dest="sklearn_version", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--display-name", dest="display_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--description", dest="description", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--project", dest="project", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--location", dest="location", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--labels", dest="labels", type=json.loads, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--staging-bucket", dest="staging_bucket", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("----output-paths", dest="_output_paths", type=str, nargs=2)
_parsed_args = vars(_parser.parse_args())
_output_files = _parsed_args.pop("_output_paths", [])
_outputs = upload_Scikit_learn_pickle_model_to_Google_Cloud_Vertex_AI(**_parsed_args)
_output_serializers = [
_serialize_str,
_serialize_json,
]
import os
for idx, output_file in enumerate(_output_files):
try:
os.makedirs(os.path.dirname(output_file))
except OSError:
pass
with open(output_file, 'w') as f:
f.write(_output_serializers[idx](_outputs[idx]))
args:
- --model
- {inputPath: model}
- if:
cond: {isPresent: sklearn_version}
then:
- --sklearn-version
- {inputValue: sklearn_version}
- if:
cond: {isPresent: display_name}
then:
- --display-name
- {inputValue: display_name}
- if:
cond: {isPresent: description}
then:
- --description
- {inputValue: description}
- if:
cond: {isPresent: project}
then:
- --project
- {inputValue: project}
- if:
cond: {isPresent: location}
then:
- --location
- {inputValue: location}
- if:
cond: {isPresent: labels}
then:
- --labels
- {inputValue: labels}
- if:
cond: {isPresent: staging_bucket}
then:
- --staging-bucket
- {inputValue: staging_bucket}
- '----output-paths'
- {outputPath: model_name}
- {outputPath: model_dict}
@@ -1,190 +0,0 @@
name: Upload Tensorflow model to Google Cloud Vertex AI
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/KFPv2_hell/components/google-cloud/Vertex_AI/Models/Upload_Tensorflow_model/workaround_for_buggy_KFPv2_compiler/component.yaml'}
inputs:
- {name: model, type: TensorflowSavedModel}
- {name: tensorflow_version, type: String, optional: true}
- name: use_gpu
type: Boolean
default: "False"
optional: true
- {name: display_name, type: String, optional: true}
- {name: description, type: String, optional: true}
- {name: project, type: String, optional: true}
- {name: location, type: String, optional: true}
- {name: labels, type: JsonObject, optional: true}
- {name: staging_bucket, type: String, optional: true}
outputs:
- {name: model_name, type: String}
- {name: model_dict, type: JsonObject}
implementation:
container:
image: python:3.9
command:
- sh
- -c
- (PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet --no-warn-script-location
'google-cloud-aiplatform==1.16.0' || PIP_DISABLE_PIP_VERSION_CHECK=1 python3
-m pip install --quiet --no-warn-script-location 'google-cloud-aiplatform==1.16.0'
--user) && "$0" "$@"
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def upload_Tensorflow_model_to_Google_Cloud_Vertex_AI(
model_path,
tensorflow_version = None,
use_gpu = False,
display_name = None,
description = None,
# Uncomment when anyone requests these:
# instance_schema_uri: str = None,
# parameters_schema_uri: str = None,
# prediction_schema_uri: str = None,
# explanation_metadata: "google.cloud.aiplatform_v1.types.explanation_metadata.ExplanationMetadata" = None,
# explanation_parameters: "google.cloud.aiplatform_v1.types.explanation.ExplanationParameters" = None,
project = None,
location = None,
labels = None,
# encryption_spec_key_name: str = None,
staging_bucket = None,
):
import json
import os
from google.cloud import aiplatform
if not location:
location = os.environ.get("CLOUD_ML_REGION")
if not labels:
labels = {}
labels["component-source"] = "github-com-ark-kun-pipeline-components"
model = aiplatform.Model.upload_tensorflow_saved_model(
saved_model_dir=model_path,
tensorflow_version=tensorflow_version,
use_gpu=use_gpu,
display_name=display_name,
description=description,
# instance_schema_uri=instance_schema_uri,
# parameters_schema_uri=parameters_schema_uri,
# prediction_schema_uri=prediction_schema_uri,
# explanation_metadata=explanation_metadata,
# explanation_parameters=explanation_parameters,
project=project,
location=location,
labels=labels,
# encryption_spec_key_name=encryption_spec_key_name,
staging_bucket=staging_bucket,
)
model_json = json.dumps(model.to_dict(), indent=2)
print(model_json)
return (model.resource_name, model_json)
def _deserialize_bool(s) -> bool:
from distutils.util import strtobool
return strtobool(s) == 1
def _serialize_json(obj) -> str:
if isinstance(obj, str):
return obj
import json
def default_serializer(obj):
if hasattr(obj, 'to_struct'):
return obj.to_struct()
else:
raise TypeError("Object of type '%s' is not JSON serializable and does not have .to_struct() method." % obj.__class__.__name__)
return json.dumps(obj, default=default_serializer, sort_keys=True)
def _serialize_str(str_value: str) -> str:
if not isinstance(str_value, str):
raise TypeError('Value "{}" has type "{}" instead of str.'.format(str(str_value), str(type(str_value))))
return str_value
import json
import argparse
_parser = argparse.ArgumentParser(prog='Upload Tensorflow model to Google Cloud Vertex AI', description='')
_parser.add_argument("--model", dest="model_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--tensorflow-version", dest="tensorflow_version", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--use-gpu", dest="use_gpu", type=_deserialize_bool, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--display-name", dest="display_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--description", dest="description", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--project", dest="project", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--location", dest="location", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--labels", dest="labels", type=json.loads, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--staging-bucket", dest="staging_bucket", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("----output-paths", dest="_output_paths", type=str, nargs=2)
_parsed_args = vars(_parser.parse_args())
_output_files = _parsed_args.pop("_output_paths", [])
_outputs = upload_Tensorflow_model_to_Google_Cloud_Vertex_AI(**_parsed_args)
_output_serializers = [
_serialize_str,
_serialize_json,
]
import os
for idx, output_file in enumerate(_output_files):
try:
os.makedirs(os.path.dirname(output_file))
except OSError:
pass
with open(output_file, 'w') as f:
f.write(_output_serializers[idx](_outputs[idx]))
args:
- --model
- {inputPath: model}
- if:
cond: {isPresent: tensorflow_version}
then:
- --tensorflow-version
- {inputValue: tensorflow_version}
- if:
cond: {isPresent: use_gpu}
then:
- --use-gpu
- {inputValue: use_gpu}
- if:
cond: {isPresent: display_name}
then:
- --display-name
- {inputValue: display_name}
- if:
cond: {isPresent: description}
then:
- --description
- {inputValue: description}
- if:
cond: {isPresent: project}
then:
- --project
- {inputValue: project}
- if:
cond: {isPresent: location}
then:
- --location
- {inputValue: location}
- if:
cond: {isPresent: labels}
then:
- --labels
- {inputValue: labels}
- if:
cond: {isPresent: staging_bucket}
then:
- --staging-bucket
- {inputValue: staging_bucket}
- '----output-paths'
- {outputPath: model_name}
- {outputPath: model_dict}
@@ -1,181 +0,0 @@
name: Upload XGBoost model to Google Cloud Vertex AI
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/google-cloud/Vertex_AI/Models/Upload_XGBoost_model/workaround_for_buggy_KFPv2_compiler/component.yaml'}
inputs:
- {name: model, type: XGBoostModel}
- {name: xgboost_version, type: String, optional: true}
- {name: display_name, type: String, optional: true}
- {name: description, type: String, optional: true}
- {name: project, type: String, optional: true}
- {name: location, type: String, optional: true}
- {name: labels, type: JsonObject, optional: true}
- {name: staging_bucket, type: String, optional: true}
outputs:
- {name: model_name, type: String}
- {name: model_dict, type: JsonObject}
implementation:
container:
image: python:3.9
command:
- sh
- -c
- (PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet --no-warn-script-location
'google-cloud-aiplatform==1.16.0' || PIP_DISABLE_PIP_VERSION_CHECK=1 python3
-m pip install --quiet --no-warn-script-location 'google-cloud-aiplatform==1.16.0'
--user) && "$0" "$@"
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def upload_XGBoost_model_to_Google_Cloud_Vertex_AI(
model_path,
xgboost_version = None,
display_name = None,
description = None,
# Uncomment when anyone requests these:
# instance_schema_uri: str = None,
# parameters_schema_uri: str = None,
# prediction_schema_uri: str = None,
# explanation_metadata: "google.cloud.aiplatform_v1.types.explanation_metadata.ExplanationMetadata" = None,
# explanation_parameters: "google.cloud.aiplatform_v1.types.explanation.ExplanationParameters" = None,
project = None,
location = None,
labels = None,
# encryption_spec_key_name: str = None,
staging_bucket = None,
):
import json
import os
import shutil
import tempfile
from google.cloud import aiplatform
if not location:
location = os.environ.get("CLOUD_ML_REGION")
if not labels:
labels = {}
labels["component-source"] = "github-com-ark-kun-pipeline-components"
# The serving container decides the model type based on the model file extension.
# So we need to rename the mode file (e.g. /tmp/inputs/model/data) to *.bst
_, renamed_model_path = tempfile.mkstemp(suffix=".bst")
shutil.copyfile(src=model_path, dst=renamed_model_path)
model = aiplatform.Model.upload_xgboost_model_file(
model_file_path=renamed_model_path,
xgboost_version=xgboost_version,
display_name=display_name,
description=description,
# instance_schema_uri=instance_schema_uri,
# parameters_schema_uri=parameters_schema_uri,
# prediction_schema_uri=prediction_schema_uri,
# explanation_metadata=explanation_metadata,
# explanation_parameters=explanation_parameters,
project=project,
location=location,
labels=labels,
# encryption_spec_key_name=encryption_spec_key_name,
staging_bucket=staging_bucket,
)
model_json = json.dumps(model.to_dict(), indent=2)
print(model_json)
return (model.resource_name, model_json)
def _serialize_json(obj) -> str:
if isinstance(obj, str):
return obj
import json
def default_serializer(obj):
if hasattr(obj, 'to_struct'):
return obj.to_struct()
else:
raise TypeError("Object of type '%s' is not JSON serializable and does not have .to_struct() method." % obj.__class__.__name__)
return json.dumps(obj, default=default_serializer, sort_keys=True)
def _serialize_str(str_value: str) -> str:
if not isinstance(str_value, str):
raise TypeError('Value "{}" has type "{}" instead of str.'.format(str(str_value), str(type(str_value))))
return str_value
import json
import argparse
_parser = argparse.ArgumentParser(prog='Upload XGBoost model to Google Cloud Vertex AI', description='')
_parser.add_argument("--model", dest="model_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--xgboost-version", dest="xgboost_version", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--display-name", dest="display_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--description", dest="description", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--project", dest="project", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--location", dest="location", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--labels", dest="labels", type=json.loads, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--staging-bucket", dest="staging_bucket", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("----output-paths", dest="_output_paths", type=str, nargs=2)
_parsed_args = vars(_parser.parse_args())
_output_files = _parsed_args.pop("_output_paths", [])
_outputs = upload_XGBoost_model_to_Google_Cloud_Vertex_AI(**_parsed_args)
_output_serializers = [
_serialize_str,
_serialize_json,
]
import os
for idx, output_file in enumerate(_output_files):
try:
os.makedirs(os.path.dirname(output_file))
except OSError:
pass
with open(output_file, 'w') as f:
f.write(_output_serializers[idx](_outputs[idx]))
args:
- --model
- {inputPath: model}
- if:
cond: {isPresent: xgboost_version}
then:
- --xgboost-version
- {inputValue: xgboost_version}
- if:
cond: {isPresent: display_name}
then:
- --display-name
- {inputValue: display_name}
- if:
cond: {isPresent: description}
then:
- --description
- {inputValue: description}
- if:
cond: {isPresent: project}
then:
- --project
- {inputValue: project}
- if:
cond: {isPresent: location}
then:
- --location
- {inputValue: location}
- if:
cond: {isPresent: labels}
then:
- --labels
- {inputValue: labels}
- if:
cond: {isPresent: staging_bucket}
then:
- --staging-bucket
- {inputValue: staging_bucket}
- '----output-paths'
- {outputPath: model_name}
- {outputPath: model_dict}
@@ -1,35 +0,0 @@
name: Download from GCS
inputs:
- {name: GCS path, type: String}
outputs:
- {name: Data}
metadata:
annotations:
author: Alexey Volkov <alexey.volkov@ark-kun.com>
canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/google-cloud/storage/download/workaround_for_buggy_KFPv2_compiler/component.yaml'
implementation:
container:
image: google/cloud-sdk
command:
- bash # Pattern comparison only works in Bash
- -ex
- -c
- |
if [ -n "${GOOGLE_APPLICATION_CREDENTIALS}" ]; then
gcloud auth activate-service-account --key-file="${GOOGLE_APPLICATION_CREDENTIALS}"
fi
uri="$0"
output_path="$1"
# Checking whether the URI points to a single blob, a directory or a URI pattern
# URI points to a blob when that URI does not end with slash and listing that URI only yields the same URI
if [[ "$uri" != */ ]] && (gsutil ls "$uri" | grep --fixed-strings --line-regexp "$uri"); then
mkdir -p "$(dirname "$output_path")"
gsutil -m cp -r "$uri" "$output_path"
else
mkdir -p "$output_path" # When source path is a directory, gsutil requires the destination to also be a directory
gsutil -m rsync -r "$uri" "$output_path" # gsutil cp has different path handling than Linux cp. It always puts the source directory (name) inside the destination directory. gsutil rsync does not have that problem.
fi
- inputValue: GCS path
- outputPath: Data
@@ -1,112 +0,0 @@
name: Load image classification model from tfhub
description: |
Loads specified model from TFHub, creates layer to receive additional (3 channel) imagery data.
Args:
class_names (Sequence[str]):
Sequence of strings of categories for classification corresponding to input data.
loaded_model_path (str):
Output path for the loaded model.
image_size_path (str):
Output path for the model expected image size.
model_name (Optional[str]):
Name of the pre-trained image classification model to load from TFHub.
Eligible model_name:
- efficientnetv2-s
- efficientnetv2-m
- efficientnetv2-l
- efficientnetv2-s-21k
- efficientnetv2-m-21k
- efficientnetv2-l-21k
- efficientnetv2-xl-21k
- efficientnetv2-b0-21k
- efficientnetv2-b1-21k
- efficientnetv2-b2-21k
- efficientnetv2-b3-21k
- efficientnetv2-s-21k-ft1k
- efficientnetv2-m-21k-ft1k
- efficientnetv2-l-21k-ft1k
- efficientnetv2-xl-21k-ft1k
- efficientnetv2-b0-21k-ft1k
- efficientnetv2-b1-21k-ft1k
- efficientnetv2-b2-21k-ft1k
- efficientnetv2-b3-21k-ft1k
- efficientnetv2-b0
- efficientnetv2-b1
- efficientnetv2-b2
- efficientnetv2-b3
- efficientnet_b0
- efficientnet_b1
- efficientnet_b2
- efficientnet_b3
- efficientnet_b4
- efficientnet_b5
- efficientnet_b6
- efficientnet_b7
- bit_s-r50x1
- inception_v3
- inception_resnet_v2
- resnet_v1_50
- resnet_v1_101
- resnet_v1_152
- resnet_v2_50
- resnet_v2_101
- resnet_v2_152
- nasnet_large
- nasnet_mobile
- pnasnet_large
- mobilenet_v2_100_224
- mobilenet_v2_130_224
- mobilenet_v2_140_224
- mobilenet_v3_small_100_224
- mobilenet_v3_small_075_224
- mobilenet_v3_large_100_224
- mobilenet_v3_large_075_224
dropout_rate (Optional[float]):
Fraction of input units to drop in the last layer. Value should be between 0.0 and 1.0.
trainable (Optional[bool]):
If true fine tuning will be performed on entire Hub model. If false only additional
layers will be trained.
l2_regularization_penalty (Optional[float]):
l2 regularization penalty.
inputs:
- {name: class_names, type: 'typing.List[str]', description: List of class names corresponding
to the input image data}
- {name: model_name, type: String, description: Name of the TFHub model to load, default: efficientnetv2-xl-21k,
optional: true}
- {name: dropout_rate, type: Float, description: Dropout rate, default: '0.2', optional: true}
- name: trainable
type: Boolean
description: True if fine tuning should be performed
default: "True"
optional: true
- {name: l2_regularization_penalty, type: Float, description: Regularization penalty,
default: '0.0001', optional: true}
outputs:
- {name: loaded_model_path, type: TensorflowSavedModel, description: Output path for
the loaded model}
- {name: image_size_path, type: HeightWidth}
implementation:
container:
image: us-docker.pkg.dev/vertex-ai/ready-to-go-image-classification/image-components:v0.2
# command is a list of strings (command-line arguments).
# The YAML language has two syntaxes for lists and you can use either of them.
# Here we use the "flow syntax" - comma-separated strings inside square brackets.
command: [
python3,
# Path of the program inside the container
/pipelines/component/src/loading_component.py,
--loaded-model-path,
{outputPath: loaded_model_path},
--class-names,
{inputValue: class_names},
--model-name,
{inputValue: model_name},
--dropout-rate,
{inputValue: dropout_rate},
--trainable,
{inputValue: trainable},
--l2-regularization-penalty,
{inputValue: l2_regularization_penalty},
--image-size-path,
{outputPath: image_size_path},
]
@@ -1,62 +0,0 @@
# python3 -m pip install "kfp<2.0.0" "google-cloud-aiplatform>=1.16.0" --upgrade --quiet
from kfp import components
from kfp.v2 import dsl
# %% Loading components
upload_Tensorflow_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url('https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_Tensorflow_model/component.yaml')
deploy_model_to_endpoint_op = components.load_component_from_url('https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Deploy_to_endpoint/component.yaml')
transcode_imagedataset_tfrecord_from_csv_op = components.load_component_from_url('https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/main/community-content/pipeline_components/image_ml_model_training/transcode_tfrecord_image_dataset_from_csv/component.yaml')
load_image_classification_model_from_tfhub_op = components.load_component_from_url('https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/b5b65198a6c2ffe8c0fa2aa70127e3325752df68/community-content/pipeline_components/image_ml_model_training/load_image_classification_model/component.yaml')
preprocess_image_data_op = components.load_component_from_url('https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/main/community-content/pipeline_components/image_ml_model_training/preprocess_image_data/component.yaml')
train_tensorflow_image_classification_model_op = components.load_component_from_url('https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/main/community-content/pipeline_components/image_ml_model_training/train_image_classification_model/component.yaml')
# %% Pipeline definition
def image_classification_pipeline():
class_names = ['daisy', 'dandelion', 'roses', 'sunflowers', 'tulips']
csv_image_data_path = 'gs://cloud-samples-data/ai-platform/flowers/flowers.csv'
deploy_model = False
image_data = dsl.importer(
artifact_uri=csv_image_data_path, artifact_class=dsl.Dataset).output
image_tfrecord_data = transcode_imagedataset_tfrecord_from_csv_op(
csv_image_data_path=image_data,
class_names=class_names
).outputs['tfrecord_image_data_path']
loaded_model_outputs = load_image_classification_model_from_tfhub_op(
class_names=class_names,
).outputs
preprocessed_data = preprocess_image_data_op(
image_tfrecord_data,
height_width_path=loaded_model_outputs['image_size_path'],
).outputs
trained_model = (train_tensorflow_image_classification_model_op(
preprocessed_training_data_path = preprocessed_data['preprocessed_training_data_path'],
preprocessed_validation_data_path = preprocessed_data['preprocessed_validation_data_path'],
model_path=loaded_model_outputs['loaded_model_path']).
set_cpu_limit('96').
set_memory_limit('128G').
add_node_selector_constraint('cloud.google.com/gke-accelerator', 'NVIDIA_TESLA_A100').
set_gpu_limit('8').
outputs['trained_model_path'])
vertex_model_name = upload_Tensorflow_model_to_Google_Cloud_Vertex_AI_op(
model=trained_model,
).outputs['model_name']
# Deploying the model might incur additional costs over time
if deploy_model:
vertex_endpoint_name = deploy_model_to_endpoint_op(
model_name=vertex_model_name,
).outputs['endpoint_name']
pipeline_func = image_classification_pipeline
# %% Pipeline submission
if __name__ == '__main__':
from google.cloud import aiplatform
aiplatform.PipelineJob.from_pipeline_func(pipeline_func=pipeline_func).submit()
@@ -1,57 +0,0 @@
name: Preprocess image data
description: |
Preprocess the image data and split between train and validation.
Args:
input_data_path (str):
Input path for the TFRecord image data. Data will be formatted as 'label' (encoded image
label), and 'image_raw' (the binary string of the image data).
height_width_path (str):
Path to square height and width to resize images to. File should contain single float value.
Value is dependent on training model.
preprocessed_training_data_path (str):
Output path for the TFRecord training data. Data will be formatted as 'label' (encoded image
label), and 'image_raw' (the binary string of the image data).
preprocessed_validation_data_path (str):
Output path for the TFRecord validation data. Data will be formatted as 'label' (encoded
image label), and 'image_raw' (the binary string of the image data).
validation_split (Optional[float]):
Fraction of data that will make up validation dataset. Value should be between 0.0 and 1.0.
seed (Optional[int]):
The global random seed to ensure the system gets a unique random sequence
that is deterministic (https://www.tensorflow.org/api_docs/python/tf/random/set_seed).
inputs:
- {name: input_data_path, type: ImageDatasetTFRecord, description: 'Input path for
the TFRecord image data,'}
- {name: height_width_path, type: HeightWidth, description: 'Path to square height and width to
resize images to,'}
- {name: validation_split, type: Float, description: 'Fraction of data that will make
up validation dataset,', default: '0.2', optional: true}
- {name: seed, type: Integer, description: Random seed, default: '0', optional: true}
outputs:
- {name: preprocessed_training_data_path, type: ImageDatasetTFRecord, description: 'Output
path for the training data,'}
- {name: preprocessed_validation_data_path, type: ImageDatasetTFRecord, description: 'Output
path for the validation data,'}
implementation:
container:
image: us-docker.pkg.dev/vertex-ai/ready-to-go-image-classification/image-components:v0.2
# command is a list of strings (command-line arguments).
# The YAML language has two syntaxes for lists and you can use either of them.
# Here we use the "flow syntax" - comma-separated strings inside square brackets.
command: [
python3,
# Path of the program inside the container
/pipelines/component/src/preprocessing_component.py,
--input-data-path,
{inputPath: input_data_path},
--height-width-path,
{inputPath: height_width_path},
--validation-split,
{inputValue: validation_split},
--seed,
{inputValue: seed},
--preprocessed-training-data-path,
{outputPath: preprocessed_training_data_path},
--preprocessed-validation-data-path,
{outputPath: preprocessed_validation_data_path},
]
@@ -1,90 +0,0 @@
name: Train tensorflow image classification model
description: |
Creates a trained image classification TensorFlow model.
Args:
preprocessed_training_data_path (str):
Input path to the TFRecord training data. Data will be formatted as 'label' (encoded image
label), and 'image_raw' (the binary string of the image data).
preprocessed_validation_data_path (str):
Input path to the TFRecord validation data. Data will be formatted as 'label' (encoded
image label), and 'image_raw' (the binary string of the image data).
model_path (str):
Input path to the loaded pre-trained model.
trained_model_path (str):
Output path to save the trained model to.
optimizer_name (Optional[str]):
Name of the tf.keras optimizer. Available optimizers are listed at
https://keras.io/api/optimizers/
optimizer_parameters (Optional[Dict[str, str]]):
Optimizer parameters.
loss_function_name (Optional[str]):
Name of the loss function.
loss_function_parameters (Optional[Dict[str, str]]):
Loss function parameters.
number_of_epochs (Optional[int]):
Number of training iterations over data.
metric_names (Optional[Sequence[str]]):
List of tf.keras.metrics to be evaluated by the model during training and testing. Available
metrics are listed at https://keras.io/api/metrics/.
seed Optional(int):
The global random seed to ensure the system gets a unique random sequence
that is deterministic (https://www.tensorflow.org/api_docs/python/tf/random/set_seed).
inputs:
- {name: preprocessed_training_data_path, type: ImageDatasetTFRecord, description: 'Input
path for the training data,'}
- {name: preprocessed_validation_data_path, type: ImageDatasetTFRecord, description: 'Input
path for the validation data,'}
- {name: model_path, type: TensorflowSavedModel, description: 'Input path for the
model,'}
- {name: optimizer_name, type: String, description: 'Name of the optimizer,', default: SGD,
optional: true}
- {name: optimizer_parameters, type: 'typing.Dict[str, str]', description: 'Optimizer
parameters,', default: '{}', optional: true}
- {name: loss_function_name, type: String, description: 'Name of the loss function,',
default: CategoricalCrossentropy, optional: true}
- {name: loss_function_parameters, type: 'typing.Dict[str, str]', description: 'Loss
function parameters,', default: '{}', optional: true}
- {name: number_of_epochs, type: Integer, description: 'Number of epochs,', default: '10',
optional: true}
- {name: metric_names, type: 'typing.List[str]', description: 'List of metrics to
use,', default: '["accuracy"]', optional: true}
- {name: seed, type: Integer, description: 'Random seed,', default: '0', optional: true}
- {name: batch_size, type: Integer, description: Batch size, default: '16', optional: true}
outputs:
- {name: trained_model_path, type: TensorflowSavedModel, description: 'Output path
for the saved model,'}
implementation:
container:
image: us-docker.pkg.dev/vertex-ai/ready-to-go-image-classification/image-components:v0.2
# command is a list of strings (command-line arguments).
# The YAML language has two syntaxes for lists and you can use either of them.
# Here we use the "flow syntax" - comma-separated strings inside square brackets.
command: [
python3,
# Path of the program inside the container
/pipelines/component/src/training_component.py,
--preprocessed-training-data-path,
{inputPath: preprocessed_training_data_path},
--preprocessed-validation-data-path,
{inputPath: preprocessed_validation_data_path},
--model-path,
{inputPath: model_path},
--trained-model-path,
{outputPath: trained_model_path},
--optimizer-name,
{inputValue: optimizer_name},
--loss-function-name,
{inputValue: loss_function_name},
--number-of-epochs,
{inputValue: number_of_epochs},
--seed,
{inputValue: seed},
--batch-size,
{inputValue: batch_size},
--metric-names,
{inputValue: metric_names},
--optimizer-parameters,
{inputValue: optimizer_parameters},
--loss-function-parameters,
{inputValue: loss_function_parameters},
]
@@ -1,37 +0,0 @@
name: Transcode imagedataset tfrecord from csv
description: |
Transcodes CSV Data into TFRecord file of TFExamples.
Args:
csv_image_data_path (str):
Path to the CSV image data. Data must include 'image_filepath' (Path to image file) and
'image_label' (output for a prediction) fields.
class_names (Sequence[str]):
Sequence of strings of categories for classification corresponding to input data.
tfrecord_image_data_path (str):
Output path for the TFRecord image data. Data will be formatted as 'label' (encoded image
label), and 'image_raw' (the binary string of the image data).
inputs:
- {name: csv_image_data_path, type: ImageDatasetCSV, description: Input path for the
CSV image data}
- {name: class_names, type: 'typing.List[str]', description: List of class names corresponding
to the input image data}
outputs:
- {name: tfrecord_image_data_path, type: ImageDatasetTFRecord, description: Output
path for the TFRecord image data}
implementation:
container:
image: us-docker.pkg.dev/vertex-ai/ready-to-go-image-classification/image-components:v0.2
# command is a list of strings (command-line arguments).
# The YAML language has two syntaxes for lists and you can use either of them.
# Here we use the "flow syntax" - comma-separated strings inside square brackets.
command: [
python3,
# Path of the program inside the container
/pipelines/component/src/transcoding_csv_component.py,
--csv-image-data-path,
{inputPath: csv_image_data_path},
--tfrecord-image-data-path,
{outputPath: tfrecord_image_data_path},
--class-names,
{inputValue: class_names},
]
@@ -1,39 +0,0 @@
name: Transcode imagedataset tfrecord from jsonlines
description: |
Transcodes JSONL Data into TFRecord file of TFExamples.
Args:
jsonl_image_data_path (str):
Input path for the JSONL image data
Path to the JSONL image data. Each line corresponds to a JSON input describing an image.
Schema follows AutoML image classification JSONL format
https://cloud.google.com/vertex-ai/docs/image-data/classification/prepare-data#json-lines.
class_names (Sequence[str]):
Sequence of strings of categories for classification corresponding to input data.
tfrecord_image_data_path (str):
Output path for the TFRecord image data. Data will be formatted as 'label' (encoded image
label), and 'image_raw' (the binary string of the image data).
inputs:
- {name: jsonl_image_data_path, type: ImageDatasetJsonLines, description: Input path
for the JSONL image data}
- {name: class_names, type: 'typing.List[str]', description: List of class names corresponding
to the input image data}
outputs:
- {name: tfrecord_image_data_path, type: ImageDatasetTFRecord, description: Output
path for the TFRecord image data}
implementation:
container:
image: us-docker.pkg.dev/vertex-ai/ready-to-go-image-classification/image-components:v0.2
# command is a list of strings (command-line arguments).
# The YAML language has two syntaxes for lists and you can use either of them.
# Here we use the "flow syntax" - comma-separated strings inside square brackets.
command: [
python3,
# Path of the program inside the container
/pipelines/component/src/transcoding_jsonl_component.py,
--jsonl-image-data-path,
{inputPath: jsonl_image_data_path},
--tfrecord-image-data-path,
{outputPath: tfrecord_image_data_path},
--class-names,
{inputValue: class_names},
]
@@ -1,113 +0,0 @@
name: Binarize column using Pandas on CSV data
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/pandas/Binarize_column/in_CSV_format/component.yaml'}
inputs:
- {name: table, type: CSV}
- {name: column_name, type: String}
- {name: predicate, type: String, default: '> 0', optional: true}
- {name: new_column_name, type: String, optional: true}
- name: keep_original_column
type: Boolean
default: "False"
optional: true
outputs:
- {name: transformed_table, type: CSV}
implementation:
container:
image: python:3.9
command:
- sh
- -c
- (PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet --no-warn-script-location
'pandas==1.4.3' || PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet
--no-warn-script-location 'pandas==1.4.3' --user) && "$0" "$@"
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def _make_parent_dirs_and_return_path(file_path: str):
import os
os.makedirs(os.path.dirname(file_path), exist_ok=True)
return file_path
def binarize_column_using_Pandas_on_CSV_data(
table_path,
transformed_table_path,
column_name,
predicate = "> 0",
new_column_name = None,
keep_original_column = False,
):
import pandas
df = pandas.read_csv(table_path).convert_dtypes()
original_series = df[column_name]
# Dynamically executing the predicate code
# Variable namespace for code execution
namespace = dict(x=original_series)
# I though that there should be no space before `predicate` so that "dot" predicate methods like ".between(min, max)" work.
# However Python allows spaces before dot: `df .isna()`.
# So having a space is not a problem
transform_code = f"""new_series_boolean = x {predicate}"""
# Note: exec() takes no keyword arguments
# exec(__source=transform_code, __globals=namespace)
exec(transform_code, namespace)
new_series_boolean = namespace["new_series_boolean"]
# There are multiple ways to convert boolean column to integer.
# .apply(int) might be faster. https://stackoverflow.com/a/49804868/1497385
# TODO: Do a proper benchmark.
new_series = new_series_boolean.apply(int)
# new_series = new_series_boolean.astype(int)
# new_series = new_series_boolean.replace({False: 0, True: 1})
if new_column_name:
df.insert(loc=0, column=new_column_name, value=new_series)
if not keep_original_column:
df = df.drop(columns=[column_name])
else:
df[column_name] = new_series
df.to_csv(transformed_table_path, index=False)
def _deserialize_bool(s) -> bool:
from distutils.util import strtobool
return strtobool(s) == 1
import argparse
_parser = argparse.ArgumentParser(prog='Binarize column using Pandas on CSV data', description='')
_parser.add_argument("--table", dest="table_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--column-name", dest="column_name", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--predicate", dest="predicate", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--new-column-name", dest="new_column_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--keep-original-column", dest="keep_original_column", type=_deserialize_bool, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--transformed-table", dest="transformed_table_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parsed_args = vars(_parser.parse_args())
_outputs = binarize_column_using_Pandas_on_CSV_data(**_parsed_args)
args:
- --table
- {inputPath: table}
- --column-name
- {inputValue: column_name}
- if:
cond: {isPresent: predicate}
then:
- --predicate
- {inputValue: predicate}
- if:
cond: {isPresent: new_column_name}
then:
- --new-column-name
- {inputValue: new_column_name}
- if:
cond: {isPresent: keep_original_column}
then:
- --keep-original-column
- {inputValue: keep_original_column}
- --transformed-table
- {outputPath: transformed_table}
@@ -1,75 +0,0 @@
name: Fill all missing values using Pandas on CSV data
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/pandas/Fill_all_missing_values/in_CSV_format/component.yaml'}
inputs:
- {name: table, type: CSV}
- {name: replacement_value, type: String, default: '0', optional: true}
- {name: column_names, type: JsonArray, optional: true}
outputs:
- {name: transformed_table, type: CSV}
implementation:
container:
image: python:3.9
command:
- sh
- -c
- (PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet --no-warn-script-location
'pandas==1.4.1' || PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet
--no-warn-script-location 'pandas==1.4.1' --user) && "$0" "$@"
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def _make_parent_dirs_and_return_path(file_path: str):
import os
os.makedirs(os.path.dirname(file_path), exist_ok=True)
return file_path
def fill_all_missing_values_using_Pandas_on_CSV_data(
table_path,
transformed_table_path,
replacement_value = "0",
column_names = None,
):
import pandas
df = pandas.read_csv(
table_path,
dtype="string",
)
for column_name in column_names or df.columns:
df[column_name] = df[column_name].fillna(value=replacement_value)
df.to_csv(
transformed_table_path, index=False,
)
import json
import argparse
_parser = argparse.ArgumentParser(prog='Fill all missing values using Pandas on CSV data', description='')
_parser.add_argument("--table", dest="table_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--replacement-value", dest="replacement_value", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--column-names", dest="column_names", type=json.loads, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--transformed-table", dest="transformed_table_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parsed_args = vars(_parser.parse_args())
_outputs = fill_all_missing_values_using_Pandas_on_CSV_data(**_parsed_args)
args:
- --table
- {inputPath: table}
- if:
cond: {isPresent: replacement_value}
then:
- --replacement-value
- {inputValue: replacement_value}
- if:
cond: {isPresent: column_names}
then:
- --column-names
- {inputValue: column_names}
- --transformed-table
- {outputPath: transformed_table}
@@ -1,59 +0,0 @@
name: Select columns using Pandas on CSV data
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/pandas/Select_columns/in_CSV_format/component.yaml'}
inputs:
- {name: table, type: CSV}
- {name: column_names, type: JsonArray}
outputs:
- {name: transformed_table, type: CSV}
implementation:
container:
image: python:3.9
command:
- sh
- -c
- (PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet --no-warn-script-location
'pandas==1.4.2' || PIP_DISABLE_PIP_VERSION_CHECK=1 python3 -m pip install --quiet
--no-warn-script-location 'pandas==1.4.2' --user) && "$0" "$@"
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def _make_parent_dirs_and_return_path(file_path: str):
import os
os.makedirs(os.path.dirname(file_path), exist_ok=True)
return file_path
def select_columns_using_Pandas_on_CSV_data(
table_path,
transformed_table_path,
column_names,
):
import pandas
df = pandas.read_csv(
table_path,
dtype="string",
)
df = df[column_names]
df.to_csv(transformed_table_path, index=False)
import json
import argparse
_parser = argparse.ArgumentParser(prog='Select columns using Pandas on CSV data', description='')
_parser.add_argument("--table", dest="table_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--column-names", dest="column_names", type=json.loads, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--transformed-table", dest="transformed_table_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parsed_args = vars(_parser.parse_args())
_outputs = select_columns_using_Pandas_on_CSV_data(**_parsed_args)
args:
- --table
- {inputPath: table}
- --column-names
- {inputValue: column_names}
- --transformed-table
- {outputPath: transformed_table}
@@ -1,102 +0,0 @@
name: Create fully connected tensorflow network
description: Creates fully-connected network in Tensorflow SavedModel format
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/tensorflow/Create_fully_connected_network/component.yaml'}
inputs:
- {name: input_size, type: Integer}
- {name: hidden_layer_sizes, type: JsonArray, default: '[]', optional: true}
- {name: output_size, type: Integer, default: '1', optional: true}
- {name: activation_name, type: String, default: relu, optional: true}
- {name: output_activation_name, type: String, optional: true}
- {name: random_seed, type: Integer, default: '0', optional: true}
outputs:
- {name: model, type: TensorflowSavedModel}
implementation:
container:
image: tensorflow/tensorflow:2.7.0
command:
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def _make_parent_dirs_and_return_path(file_path: str):
import os
os.makedirs(os.path.dirname(file_path), exist_ok=True)
return file_path
def create_fully_connected_tensorflow_network(
input_size,
model_path,
hidden_layer_sizes = [],
output_size = 1,
activation_name = "relu",
output_activation_name = None,
random_seed = 0,
):
"""Creates fully-connected network in Tensorflow SavedModel format"""
import tensorflow as tf
tf.random.set_seed(seed=random_seed)
model = tf.keras.models.Sequential()
model.add(tf.keras.Input(shape=(input_size,)))
for layer_size in hidden_layer_sizes:
model.add(tf.keras.layers.Dense(units=layer_size, activation=activation_name))
# The last layer is left without activation
model.add(tf.keras.layers.Dense(units=output_size, activation=output_activation_name))
print(model.summary())
# Using tf.keras.models.save_model instead of tf.saved_model.save to prevent downstream error:
#tf.saved_model.save(model, model_path)
# ValueError: Unable to create a Keras model from this SavedModel.
# This SavedModel was created with `tf.saved_model.save`, and lacks the Keras metadata.
# Please save your Keras model by calling `model.save`or `tf.keras.models.save_model`.
# See https://github.com/keras-team/keras/issues/16451
tf.keras.models.save_model(model, model_path)
import json
import argparse
_parser = argparse.ArgumentParser(prog='Create fully connected tensorflow network', description='Creates fully-connected network in Tensorflow SavedModel format')
_parser.add_argument("--input-size", dest="input_size", type=int, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--hidden-layer-sizes", dest="hidden_layer_sizes", type=json.loads, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--output-size", dest="output_size", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--activation-name", dest="activation_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--output-activation-name", dest="output_activation_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--random-seed", dest="random_seed", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--model", dest="model_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parsed_args = vars(_parser.parse_args())
_outputs = create_fully_connected_tensorflow_network(**_parsed_args)
args:
- --input-size
- {inputValue: input_size}
- if:
cond: {isPresent: hidden_layer_sizes}
then:
- --hidden-layer-sizes
- {inputValue: hidden_layer_sizes}
- if:
cond: {isPresent: output_size}
then:
- --output-size
- {inputValue: output_size}
- if:
cond: {isPresent: activation_name}
then:
- --activation-name
- {inputValue: activation_name}
- if:
cond: {isPresent: output_activation_name}
then:
- --output-activation-name
- {inputValue: output_activation_name}
- if:
cond: {isPresent: random_seed}
then:
- --random-seed
- {inputValue: random_seed}
- --model
- {outputPath: model}
@@ -1,100 +0,0 @@
name: Predict with TensorFlow model on CSV data
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/tensorflow/Predict/on_CSV/component.yaml'}
inputs:
- {name: dataset, type: CSV}
- {name: model, type: TensorflowSavedModel}
- {name: label_column_name, type: String, optional: true}
- {name: batch_size, type: Integer, default: '1000', optional: true}
outputs:
- {name: predictions}
implementation:
container:
image: tensorflow/tensorflow:2.9.1
command:
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def _make_parent_dirs_and_return_path(file_path: str):
import os
os.makedirs(os.path.dirname(file_path), exist_ok=True)
return file_path
def predict_with_TensorFlow_model_on_CSV_data(
dataset_path,
model_path,
predictions_path,
label_column_name = None,
batch_size = 1000,
):
import numpy
import tensorflow as tf
model = tf.saved_model.load(export_dir=model_path)
dataset = tf.data.experimental.make_csv_dataset(
file_pattern=dataset_path,
batch_size=batch_size,
label_name=label_column_name,
header=True,
num_epochs=1,
shuffle=False,
ignore_errors=False,
)
def stack_feature_batches(features_batch):
# Need to stack individual feature columns to create a single feature tensor
# Need to cast all column tensor types to float to prevent errors.
list_of_feature_batches = list(
tf.cast(x=feature_batch, dtype=tf.float32)
for feature_batch in features_batch.values()
)
return tf.stack(list_of_feature_batches, axis=-1)
def transform_features_and_drop_labels(features_batch, labels_batch):
return stack_feature_batches(features_batch)
dataset_map_fn = (
transform_features_and_drop_labels
if label_column_name
else stack_feature_batches
)
dataset = dataset.map(dataset_map_fn)
with open(predictions_path, "w") as predictions_file:
for features_batch in dataset:
predictions_tensor = model(features_batch)
numpy.savetxt(predictions_file, predictions_tensor.numpy())
import argparse
_parser = argparse.ArgumentParser(prog='Predict with TensorFlow model on CSV data', description='')
_parser.add_argument("--dataset", dest="dataset_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--model", dest="model_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--label-column-name", dest="label_column_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--batch-size", dest="batch_size", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--predictions", dest="predictions_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parsed_args = vars(_parser.parse_args())
_outputs = predict_with_TensorFlow_model_on_CSV_data(**_parsed_args)
args:
- --dataset
- {inputPath: dataset}
- --model
- {inputPath: model}
- if:
cond: {isPresent: label_column_name}
then:
- --label-column-name
- {inputValue: label_column_name}
- if:
cond: {isPresent: batch_size}
then:
- --batch-size
- {inputValue: batch_size}
- --predictions
- {outputPath: predictions}
@@ -1,170 +0,0 @@
name: Train model using Keras on CSV
metadata:
annotations: {author: Alexey Volkov <alexey.volkov@ark-kun.com>, canonical_location: 'https://raw.githubusercontent.com/Ark-kun/pipeline_components/master/components/tensorflow/Train_model_using_Keras/on_CSV/component.yaml'}
inputs:
- {name: training_data, type: CSV}
- {name: model, type: TensorflowSavedModel}
- {name: label_column_name, type: String}
- {name: loss_function_name, type: String, default: mean_squared_error, optional: true}
- {name: number_of_epochs, type: Integer, default: '1', optional: true}
- {name: learning_rate, type: Float, default: '0.1', optional: true}
- {name: optimizer_name, type: String, default: Adadelta, optional: true}
- {name: optimizer_parameters, type: JsonObject, optional: true}
- {name: batch_size, type: Integer, default: '32', optional: true}
- {name: metric_names, type: JsonArray, optional: true}
- {name: random_seed, type: Integer, default: '0', optional: true}
outputs:
- {name: trained_model, type: TensorflowSavedModel}
implementation:
container:
image: tensorflow/tensorflow:2.8.0
command:
- sh
- -ec
- |
program_path=$(mktemp)
printf "%s" "$0" > "$program_path"
python3 -u "$program_path" "$@"
- |
def _make_parent_dirs_and_return_path(file_path: str):
import os
os.makedirs(os.path.dirname(file_path), exist_ok=True)
return file_path
def train_model_using_Keras_on_CSV(
training_data_path,
model_path,
trained_model_path,
label_column_name,
loss_function_name = "mean_squared_error",
number_of_epochs = 1,
learning_rate = 0.1,
optimizer_name = "Adadelta",
optimizer_parameters = None,
batch_size = 32,
metric_names = None,
random_seed = 0,
):
import tensorflow as tf
tf.random.set_seed(seed=random_seed)
# Loading model using Keras. Model loaded using TensorFlow does not have .fit.
#model = tf.saved_model.load(export_dir=model_path)
keras_model = tf.keras.models.load_model(filepath=model_path)
optimizer_parameters = optimizer_parameters or {}
optimizer_parameters["learning_rate"] = learning_rate
optimizer_config = {
"class_name": optimizer_name,
"config": optimizer_parameters,
}
optimizer = tf.keras.optimizers.get(optimizer_config)
loss = tf.keras.losses.get(loss_function_name)
training_dataset = tf.data.experimental.make_csv_dataset(
file_pattern=training_data_path,
batch_size=batch_size,
label_name=label_column_name,
header=True,
# Need to specify num_epochs=1 otherwise the training becomes infinite
num_epochs=1,
shuffle=True,
shuffle_seed=random_seed,
ignore_errors=True,
)
def stack_feature_batches(features_batch, labels_batch):
# Need to stack individual feature columns to create a single feature tensor
# Need to cast all column tensor types to float to prevent error:
# TypeError: Tensors in list passed to 'values' of 'Pack' Op have types [int32, float32, float32, int32, int32] that don't all match.
list_of_feature_batches = list(tf.cast(x=feature_batch, dtype=tf.float32) for feature_batch in features_batch.values())
return tf.stack(list_of_feature_batches, axis=-1), labels_batch
training_dataset = training_dataset.map(stack_feature_batches)
# Need to compile the model to prevent error:
# ValueError: No gradients provided for any variable: [..., ...].
keras_model.compile(
optimizer=optimizer,
loss=loss,
metrics=metric_names,
)
keras_model.fit(
training_dataset,
epochs=number_of_epochs,
)
# Using tf.keras.models.save_model instead of tf.saved_model.save to prevent downstream error:
#tf.saved_model.save(keras_model, trained_model_path)
# ValueError: Unable to create a Keras model from this SavedModel.
# This SavedModel was created with `tf.saved_model.save`, and lacks the Keras metadata.
# Please save your Keras model by calling `model.save`or `tf.keras.models.save_model`.
# See https://github.com/keras-team/keras/issues/16451
tf.keras.models.save_model(keras_model, trained_model_path)
import json
import argparse
_parser = argparse.ArgumentParser(prog='Train model using Keras on CSV', description='')
_parser.add_argument("--training-data", dest="training_data_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--model", dest="model_path", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--label-column-name", dest="label_column_name", type=str, required=True, default=argparse.SUPPRESS)
_parser.add_argument("--loss-function-name", dest="loss_function_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--number-of-epochs", dest="number_of_epochs", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--learning-rate", dest="learning_rate", type=float, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--optimizer-name", dest="optimizer_name", type=str, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--optimizer-parameters", dest="optimizer_parameters", type=json.loads, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--batch-size", dest="batch_size", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--metric-names", dest="metric_names", type=json.loads, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--random-seed", dest="random_seed", type=int, required=False, default=argparse.SUPPRESS)
_parser.add_argument("--trained-model", dest="trained_model_path", type=_make_parent_dirs_and_return_path, required=True, default=argparse.SUPPRESS)
_parsed_args = vars(_parser.parse_args())
_outputs = train_model_using_Keras_on_CSV(**_parsed_args)
args:
- --training-data
- {inputPath: training_data}
- --model
- {inputPath: model}
- --label-column-name
- {inputValue: label_column_name}
- if:
cond: {isPresent: loss_function_name}
then:
- --loss-function-name
- {inputValue: loss_function_name}
- if:
cond: {isPresent: number_of_epochs}
then:
- --number-of-epochs
- {inputValue: number_of_epochs}
- if:
cond: {isPresent: learning_rate}
then:
- --learning-rate
- {inputValue: learning_rate}
- if:
cond: {isPresent: optimizer_name}
then:
- --optimizer-name
- {inputValue: optimizer_name}
- if:
cond: {isPresent: optimizer_parameters}
then:
- --optimizer-parameters
- {inputValue: optimizer_parameters}
- if:
cond: {isPresent: batch_size}
then:
- --batch-size
- {inputValue: batch_size}
- if:
cond: {isPresent: metric_names}
then:
- --metric-names
- {inputValue: metric_names}
- if:
cond: {isPresent: random_seed}
then:
- --random-seed
- {inputValue: random_seed}
- --trained-model
- {outputPath: trained_model}
@@ -1,52 +0,0 @@
# Overview
*Pluto* is a programming environment for Julia, designed to be interactive and helpful. It provides a familiar notebook interface but it is not a Jupyter notebook. The biggest difference is that Pluto notebooks are reactive, changing a variable or function in one cell causes the cells that depend on that variable or function to be reevaluated. Pluto also provides useful interaction mechanisms that allow users to dynamically interact with the notebooks computation state.
The JuliaCon 2020 presentation: [Interactive notebooks ~ Pluto.jl]() provides a good introduction to Pluto. The source is at [fonsp/Pluto.jl]()
# Install Pluto
## Create a Vertex AI JupyterLab Instance
1. From the [GCP console](https://console.cloud.google.com) "hamburger menu"
select Vertex AI > Workbench
2. Click NEW NOTEBOOK
* Choose Python 3 if you won't be using a GPU
* Choose Python 3 (CUDA Toolkit xx.y) if you do want use a GPU
3. Give the notebook an appropriate name
4. Edit Notebook properties if you have special requirements otherwise accept the defaults and click CREATE
5. When the notebook instance is ready click OPEN JUPYTERLAB
## Configure JupyterLab
1. Open a terminal by clicking the Terminal icon.
1. Install the plutoserver
pip3 install git+https://github.com/fonsp/pluto-on-jupyterlab.git
1. In a browser go to [julialang.org/downloads](https://julialang.org/downloads/)
1. In the Current stable release right click on the `Generic Linux on x86 / 64-bit (glibc)` link
Select copy link address
1. Back in the terminal switch to root via
sudo -i
1. Download the release to /opt and install julia in /usr/local/bin
```bash
cd /opt
wget <paste the release link address>
tar xf <name of the downloaded tar file>
ln -s /opt/<julia-x.y.z>/bin/julia /usr/local/bin
^d
```
1. Add the Pluto package to Julia
```bash
julia
julia> ]add Pluto
julia> bksp
julia> using Pluto
julia> ^d
```
1. From the JupyterLab menu bar select File > Shut Down
# Start Pluto
1. Click OPEN JUPYTERLAB in the Workbench
1. In the Notebook section of the Launcher click Pluto.jl
1. The welcome to Pluto.jl screen should appear

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