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Author SHA1 Message Date
Andrew Ferlitsch e5d9a0db51 migration: experiments 2023-01-19 22:19:39 +00:00
Andrew Ferlitsch 27918651ab migration: experiments 2023-01-19 20:55:00 +00:00
Andrew Ferlitsch c4d632b797 migration: experiments 2023-01-19 20:45:54 +00:00
Andrew Ferlitsch 610dfda3ab migration: experiments 2023-01-19 20:43:39 +00:00
Andrew Ferlitsch 1e8dd46334 migration: experiments 2023-01-19 20:33:38 +00:00
362 changed files with 32673 additions and 122869 deletions
+5 -27
View File
@@ -1,14 +1,5 @@
from typing import List
from ratemate import RateLimit
import argparse
parser = argparse.ArgumentParser()
parser.add_argument("--dry_run",
type=bool,
default=False)
args = parser.parse_args()
from resource_cleanup_manager import (
DatasetResourceCleanupManager,
ModelResourceCleanupManager,
@@ -16,14 +7,6 @@ from resource_cleanup_manager import (
ResourceCleanupManager,
MatchingEngineIndexEndpointResourceCleanupManager,
MatchingEngineIndexResourceCleanupManager,
FeatureStoreCleanupManager,
PipelineJobCleanupManager,
TrainingJobCleanupManager,
HyperparameterTuningCleanupManager,
BatchPredictionJobCleanupManager,
ExperimentCleanupManager,
BucketCleanupManager,
ArtifactRegistryCleanupManager
)
rate_limit = RateLimit(max_count=25, per=60, greedy=False)
@@ -40,6 +23,7 @@ def run_cleanup_managers(managers: List[ResourceCleanupManager], is_dry_run: boo
try:
if not manager.is_deletable(resource):
continue
if is_dry_run:
resource_name = manager.resource_name(resource)
print(f"Will delete '{type_name}': {resource_name}")
@@ -52,7 +36,9 @@ def run_cleanup_managers(managers: List[ResourceCleanupManager], is_dry_run: boo
print("")
if args.dry_run:
is_dry_run = False
if is_dry_run:
print("Starting cleanup in dry run mode...")
# List of all cleanup managers
@@ -62,14 +48,6 @@ managers: List[ResourceCleanupManager] = [
ModelResourceCleanupManager(), # ModelResourceCleanupManager must follow EndpointResourceCleanupManager due to deployed models blocking model deletion.
MatchingEngineIndexEndpointResourceCleanupManager(),
MatchingEngineIndexResourceCleanupManager(),
FeatureStoreCleanupManager(),
PipelineJobCleanupManager(),
TrainingJobCleanupManager(),
HyperparameterTuningCleanupManager(),
BatchPredictionJobCleanupManager(),
ExperimentCleanupManager(), # Experiment missing _resource_noun
BucketCleanupManager(),
ArtifactRegistryCleanupManager()
]
run_cleanup_managers(managers=managers, is_dry_run=args.dry_run)
run_cleanup_managers(managers=managers, is_dry_run=is_dry_run)
@@ -1,18 +1,8 @@
'''
READ FIRST BEFORE MAKING CHANGES
- Create a convention for resources created from vertex-ai-samples GH. We already have one IIRC
- Only delete those objects as part of our clean-up script.
- Don't run any tests on python-docs-samples-tests project, especially ones that affect resources created outside of our purview
- Add --dry-run option to the clean-up script. This option will just output the list of resources the script will delete instead of actually deleting the resources.
- Have a larger conversation in DEE before touching any resources that were not created as part of vertex-ai-samples
'''
import os
import abc
from typing import Any, Type
from google.cloud import aiplatform
from google.cloud.aiplatform import base
from google.cloud import storage
from proto.datetime_helpers import DatetimeWithNanoseconds
# If a resource was updated within this number of seconds, do not delete.
@@ -79,7 +69,7 @@ class VertexAIResourceCleanupManager(ResourceCleanupManager):
def delete(self, resource):
resource.delete()
def get_seconds_since_modification(self, resource: Any) -> float:
def get_seconds_since_modification(self, resource: Any) -> bool:
update_time = resource.update_time
current_time = DatetimeWithNanoseconds.now(tz=update_time.tzinfo)
return (current_time - update_time).total_seconds()
@@ -107,10 +97,13 @@ class EndpointResourceCleanupManager(VertexAIResourceCleanupManager):
vertex_ai_resource = aiplatform.Endpoint
def delete(self, resource):
# TODO: Remove this once https://github.com/googleapis/python-aiplatform/issues/1441 is fixed
resource._sync_gca_resource()
for deployed_model_id in [
models.id for models in resource._gca_resource.deployed_models
]:
resource._undeploy(deployed_model_id=deployed_model_id)
resource.delete(force=True)
@@ -124,137 +117,3 @@ class MatchingEngineIndexResourceCleanupManager(VertexAIResourceCleanupManager):
class MatchingEngineIndexEndpointResourceCleanupManager(VertexAIResourceCleanupManager):
vertex_ai_resource = aiplatform.MatchingEngineIndexEndpoint
def delete(self, resource):
resource.undeploy_all()
resource.delete(force=True)
class FeatureStoreCleanupManager(VertexAIResourceCleanupManager):
vertex_ai_resource = aiplatform.Featurestore
def resource_name(self, resource: Any) -> str:
return resource.name
class PipelineJobCleanupManager(VertexAIResourceCleanupManager):
vertex_ai_resource = aiplatform.PipelineJob
class TrainingJobCleanupManager(VertexAIResourceCleanupManager):
vertex_ai_resource = aiplatform.training_jobs._CustomTrainingJob
job_types = [
aiplatform.AutoMLImageTrainingJob,
aiplatform.AutoMLTextTrainingJob,
aiplatform.AutoMLTabularTrainingJob,
aiplatform.AutoMLVideoTrainingJob,
aiplatform.AutoMLForecastingTrainingJob,
aiplatform.CustomJob,
aiplatform.CustomTrainingJob,
aiplatform.CustomContainerTrainingJob,
aiplatform.CustomPythonPackageTrainingJob
]
def list(self) -> Any:
return [
job
for job_type in self.job_types
for job in job_type.list()
]
class HyperparameterTuningCleanupManager(VertexAIResourceCleanupManager):
vertex_ai_resource = aiplatform.HyperparameterTuningJob
class BatchPredictionJobCleanupManager(VertexAIResourceCleanupManager):
vertex_ai_resource = aiplatform.BatchPredictionJob
class ExperimentCleanupManager(VertexAIResourceCleanupManager):
vertex_ai_resource = aiplatform.Experiment
@property
def type_name(self) -> str:
return "Experiment"
def resource_name(self, resource: Any) -> str:
return resource.name
def get_seconds_since_modification(self, resource: Any) -> float:
update_time = resource._metadata_context.update_time
current_time = DatetimeWithNanoseconds.now()
return float(current_time.timestamp() - update_time.timestamp())
class BucketCleanupManager(ResourceCleanupManager):
vertex_ai_resource = storage.bucket.Bucket
def list(self) -> Any:
storage_client = storage.Client()
return list(storage_client.list_buckets())
def delete(self, resource):
try:
resource.delete(force=True)
except Exception as e:
print(e)
@property
def type_name(self) -> str:
return "Bucket"
def get_seconds_since_modification(self, resource: Any) -> float:
# Bucket has no last_update property, only time created
created_time = resource.time_created
current_time = DatetimeWithNanoseconds.now()
return float(current_time.timestamp() - created_time.timestamp())
def resource_name(self, resource: Any) -> str:
return resource.name
def is_deletable(self, resource: Any) -> bool:
time_difference = self.get_seconds_since_modification(resource)
if not self.resource_name(resource).startswith('your-bucket-name'):
print(f"Skipping '{resource}' not a Vertex AI notebook bucket")
return False
# Check that it wasn't created too recently, to prevent race conditions
if time_difference <= RESOURCE_UPDATE_BUFFER_IN_SECONDS:
print(
f"Skipping '{resource}' due to update_time being '{time_difference}', which is less than '{RESOURCE_UPDATE_BUFFER_IN_SECONDS}'."
)
return False
return True
class ArtifactRegistryCleanupManager(ResourceCleanupManager):
vertex_ai_resource = "Artifact Registry"
def list(self) -> Any:
import subprocess
result = subprocess.run(["gcloud artifacts repositories list --location=us-central1"],
shell=True, capture_output=True, text=True)
ret = []
lines = result.stdout.split('\n')[2:]
for line in lines:
repo = line.split(' ')[0]
if repo.startswith("my-docker-repo"):
ret.append(repo)
return ret
def delete(self, resource):
os.system(f"! gcloud artifacts repositories delete {resource} --location=us-central1")
@property
def type_name(self) -> str:
return "ArtifactRepository"
def resource_name(self, resource: Any) -> str:
return resource
# delete repository regardless of age
def get_seconds_since_modification(self, resource: Any) -> float:
return RESOURCE_UPDATE_BUFFER_IN_SECONDS + 1
def is_deleteable(self, resource: Any) -> bool:
return True
+13 -63
View File
@@ -17,7 +17,6 @@
import argparse
import pathlib
import os
import execute_changed_notebooks_helper
@@ -40,19 +39,6 @@ parser.add_argument(
help="The path to the file that has newline-limited folders of notebooks that should be tested.",
required=True,
)
parser.add_argument(
"--test_percent",
type=int,
help="The percent of notebooks to be tested (between 1 and 100).",
required=False,
default=100,
)
parser.add_argument(
"--build_id",
type=str,
help="The build id (which may be a Cloud Build job specific or user explicit.",
required=True
)
parser.add_argument(
"--base_branch",
help="The base git branch to diff against to find changed files.",
@@ -121,60 +107,24 @@ parser.add_argument(
default=True,
help="Should run notebooks in parallel.",
)
parser.add_argument(
"--concurrent_notebooks",
type=int,
help="Maximum number of parallel notebook executions per minute",
default=10,
required=False,
)
parser.add_argument(
"--dry_run",
type=str2bool,
default=False,
help="Dry run for testing - no execution",
)
args = parser.parse_args()
changed_notebooks = execute_changed_notebooks_helper.get_changed_notebooks(
notebooks = execute_changed_notebooks_helper.get_changed_notebooks(
test_paths_file=args.test_paths_file,
base_branch=args.base_branch,
)
results_bucket = f"{args.artifacts_bucket}"
# artifacts_bucket may get set by trigger to a full gs:// folder path
if results_bucket.startswith("gs://"):
results_bucket = results_bucket[5:]
results_bucket = results_bucket.split('/')[0]
results_file = f"build_results/{args.build_id}.json"
if args.test_percent == 100:
notebooks = changed_notebooks
accumulative_results = {}
else:
accumulative_results = execute_changed_notebooks_helper.load_results(results_bucket, results_file)
notebooks = [changed_notebook for changed_notebook in changed_notebooks if execute_changed_notebooks_helper.select_notebook(changed_notebook, accumulative_results, args.test_percent)]
if args.dry_run:
print("Dry run ...\n")
for notebook in notebooks:
print(f"Would execute: {notebook}")
else:
execute_changed_notebooks_helper.process_and_execute_notebooks(
notebooks=notebooks,
container_uri=args.container_uri,
staging_bucket=args.staging_bucket,
artifacts_bucket=args.artifacts_bucket,
results_file=results_file,
should_parallelize=args.should_parallelize,
timeout=args.timeout,
variable_project_id=args.variable_project_id,
variable_region=args.variable_region,
variable_service_account=args.variable_service_account,
variable_vpc_network=args.variable_vpc_network,
private_pool_id=args.private_pool_id,
concurrent_notebooks=args.concurrent_notebooks,
execute_changed_notebooks_helper.process_and_execute_notebooks(
notebooks=notebooks,
container_uri=args.container_uri,
staging_bucket=args.staging_bucket,
artifacts_bucket=args.artifacts_bucket,
should_parallelize=args.should_parallelize,
timeout=args.timeout,
variable_project_id=args.variable_project_id,
variable_region=args.variable_region,
variable_service_account=args.variable_service_account,
variable_vpc_network=args.variable_vpc_network,
private_pool_id=args.private_pool_id,
)
@@ -21,21 +21,18 @@ import json
import git
import operator
import os
import io
import json
import pathlib
import re
import subprocess
import random
from google.cloud import storage
import utils
from typing import List, Optional, Dict, Any
from typing import List, Optional
from utils import util
import execute_notebook_helper
import execute_notebook_remote
import nbformat
from google.cloud.devtools.cloudbuild_v1.types import BuildOperationMetadata
from ratemate import RateLimit
from tabulate import tabulate
from utils import NotebookProcessors, util
@@ -43,9 +40,6 @@ from utils import NotebookProcessors, util
WORKER_TIMEOUT_BUFFER_IN_SECONDS: int = 60 * 60
PYTHON_VERSION = "3.9" # Set default python version
# rolling time window for accumulating build results for selecting notebooks
MAX_RESULTS_AGE_SECONDS: int = (60 * 60) * 24 * 60 # 60 days
def format_timedelta(delta: datetime.timedelta) -> str:
"""Formats a timedelta duration to [N days] %H:%M:%S format"""
@@ -71,9 +65,7 @@ def format_timedelta(delta: datetime.timedelta) -> str:
@dataclasses.dataclass
class NotebookExecutionResult:
name: str
path: str
duration: datetime.timedelta
start_time: datetime.datetime
is_pass: bool
log_url: str
output_uri: str
@@ -89,75 +81,6 @@ class NotebookExecutionResult:
return None
def load_results(results_bucket: str,
results_file: str) -> Dict[str, Any]:
'''
Load accumulated notebook test results
'''
print("Loading existing accumulative results ...")
accumulative_results = {}
try:
client = storage.Client()
bucket = client.bucket(results_bucket)
build_results_dir = os.path.dirname(results_file)
blobs = client.list_blobs(results_bucket, prefix=build_results_dir)
for blob in blobs:
time_created = blob.time_created.replace(tzinfo=None)
if (datetime.datetime.now().replace(tzinfo=None) - time_created).total_seconds() > MAX_RESULTS_AGE_SECONDS:
continue
content = util.download_blob_into_memory(results_bucket, blob.name, download_as_text=True)
try:
build_results = json.loads(content)
except:
continue # skip corrupted build results files
for notebook in build_results:
if notebook in accumulative_results:
accumulative_results[notebook]['passed'] += build_results[notebook]['passed']
accumulative_results[notebook]['failed'] += build_results[notebook]['failed']
else:
accumulative_results[notebook] = build_results[notebook]
print(accumulative_results)
except Exception as e:
print(e)
# If there are no accumulative results, an empty dict is returned
return accumulative_results
def select_notebook(changed_notebook: str,
accumulative_results: Dict[str, Any],
test_percent: int) -> bool:
'''
Algorithm to randomly select a notebook, but weight the propbability of selected based on past failures
'''
if changed_notebook in accumulative_results:
pass_count = accumulative_results[changed_notebook]['passed']
fail_count = accumulative_results[changed_notebook]['failed']
else:
pass_count = 1
fail_count = 0
inferred_failure_rate = fail_count / (pass_count + fail_count)
# If failure rate is high, the chance of testing should be higher
should_test_due_to_failure = random.uniform(0, 1) <= inferred_failure_rate
# Additionally, only test a percentage of these
should_test_due_to_random_subset = random.uniform(0, 1) <= (test_percent / 100)
if should_test_due_to_failure or should_test_due_to_random_subset:
print(f"Selected: {changed_notebook}, {should_test_due_to_failure}, {should_test_due_to_random_subset}")
return True
else:
print(f"Not Selected: {changed_notebook}, pass {pass_count}, fail {fail_count}")
return False
def _process_notebook(
notebook_path: str,
variable_project_id: str,
@@ -233,6 +156,7 @@ def _create_tag(filepath: str) -> str:
return tag
rate_limit = RateLimit(max_count=50, per=60, greedy=True)
def process_and_execute_notebook(
@@ -248,6 +172,7 @@ def process_and_execute_notebook(
notebook: str,
should_get_tail_logs: bool = False,
) -> NotebookExecutionResult:
rate_limit.wait() # wait before creating the task
print(f"Running notebook: {notebook}")
@@ -266,9 +191,7 @@ def process_and_execute_notebook(
result = NotebookExecutionResult(
name=tag,
path=notebook,
duration=datetime.timedelta(seconds=0),
start_time=datetime.datetime.now(),
is_pass=False,
output_uri=notebook_output_uri,
log_url="",
@@ -278,6 +201,7 @@ def process_and_execute_notebook(
)
# TODO: Handle cases where multiple notebooks have the same name
time_start = datetime.datetime.now()
operation = None
try:
# Get the python version for running the notebook if specified
@@ -323,10 +247,9 @@ def process_and_execute_notebook(
# Block and wait for the result
operation_result = operation.result(timeout=timeout_in_seconds)
result.duration = datetime.datetime.now() - result.start_time
result.duration = datetime.datetime.now() - time_start
result.is_pass = True
print(f"{notebook} PASSED in {format_timedelta(result.duration)}.")
except Exception as error:
result.error_message = str(error)
@@ -345,7 +268,7 @@ def process_and_execute_notebook(
except Exception as error:
result.error_message = str(error)
result.duration = datetime.datetime.now() - result.start_time
result.duration = datetime.datetime.now() - time_start
result.is_pass = False
print(
@@ -413,44 +336,12 @@ def get_changed_notebooks(
return notebooks
def _save_results(results: List[NotebookExecutionResult],
artifacts_bucket: str,
results_file: str):
artifacts_bucket = artifacts_bucket.replace("gs://", "").split('/')[0]
print("Updating build results ...")
build_results = {}
for result in results:
if result.is_pass:
pass_count = 1
fail_count = 0
else:
pass_count = 0
fail_count = 1
build_results[result.path] = {
'duration': result.duration.total_seconds(),
'start_time': str(result.start_time),
'passed': pass_count,
'failed': fail_count
}
print(f"adding {result.path}")
print("Saving accumulative results ...")
content = json.dumps(build_results)
client = storage.Client()
bucket = client.get_bucket(artifacts_bucket)
bucket.blob(str(results_file)).upload_from_string(content, 'text/json')
def process_and_execute_notebooks(
notebooks: List[str],
container_uri: str,
staging_bucket: str,
artifacts_bucket: str,
results_file: str,
should_parallelize: bool,
timeout: int,
variable_project_id: str,
@@ -458,7 +349,6 @@ def process_and_execute_notebooks(
variable_service_account: str,
variable_vpc_network: Optional[str] = None,
private_pool_id: Optional[str] = None,
concurrent_notebooks: Optional[int] = 10,
):
"""
Run the notebooks that exist under the folders defined in the test_paths_file.
@@ -479,8 +369,6 @@ def process_and_execute_notebooks(
Required. The GCS staging bucket to write source code to.
artifacts_bucket (str):
Required. The GCS staging bucket to write executed notebooks to.
results_file (str):
Required: The path to the artifacts bucket to save results
variable_project_id (str):
Required. The value for PROJECT_ID to inject into notebooks.
variable_region (str):
@@ -489,7 +377,6 @@ def process_and_execute_notebooks(
Required. Should run notebooks in parallel using a thread pool as opposed to in sequence.
timeout (str):
Required. Timeout string according to https://cloud.google.com/build/docs/build-config-file-schema#timeout.
concurrent_notebooks (int): Max number of notebooks per minute to run in parallel.
"""
# Calculate deadline
@@ -506,9 +393,7 @@ def process_and_execute_notebooks(
print(
"Running notebooks in parallel, so no logs will be displayed. Please wait..."
)
with concurrent.futures.ThreadPoolExecutor(max_workers=concurrent_notebooks) as executor:
with concurrent.futures.ThreadPoolExecutor(max_workers=100) as executor:
print(f"Max workers: {executor._max_workers}")
notebook_execution_results = list(
@@ -586,7 +471,7 @@ def process_and_execute_notebooks(
print("=" * 100)
build_id = results_sorted[0].build_id
logs_bucket_name = (results_sorted[0].logs_bucket).replace("gs://", "")
logs_bucket_name = (results_sorted[0].logs_bucket).removeprefix("gs://")
log_file_name = f"log-{build_id}.txt"
log_contents = util.download_blob_into_memory(
@@ -604,10 +489,6 @@ def process_and_execute_notebooks(
else:
print(log_contents)
_save_results(results_sorted,
artifacts_bucket,
results_file)
print("\n=== END RESULTS===\n")
total_notebook_duration = functools.reduce(
@@ -36,7 +36,7 @@ steps:
- -c
- |
. workspace/env/bin/activate &&
python3 .cloud-build/execute_changed_notebooks_cli.py --test_paths_file "${_TEST_PATHS_FILE}" --base_branch "${_FORCED_BASE_BRANCH}" --container_uri ${_PYTHON_IMAGE} --staging_bucket ${_GCS_STAGING_BUCKET} --artifacts_bucket ${_GCS_STAGING_BUCKET}/executed_notebooks/PR_${_PR_NUMBER}/BUILD_${BUILD_ID} --variable_project_id ${PROJECT_ID} --variable_region ${_GCP_REGION} --variable_service_account ${_GCP_SERVICE_ACCOUNT} --variable_vpc_network "${_GPC_VPC_NETWORK_NAME}" `if [ ! -z "${_PRIVATE_POOL_NAME}" ]; then echo "--private_pool_id ${_PRIVATE_POOL_NAME}"; fi` --build_id ${BUILD_ID} --test_percent=${_TEST_PERCENT} --concurrent_notebooks=${_CONCURRENT_NOTEBOOKS}
python3 .cloud-build/execute_changed_notebooks_cli.py --test_paths_file "${_TEST_PATHS_FILE}" --base_branch "${_FORCED_BASE_BRANCH}" --container_uri ${_PYTHON_IMAGE} --staging_bucket ${_GCS_STAGING_BUCKET} --artifacts_bucket ${_GCS_STAGING_BUCKET}/executed_notebooks/PR_${_PR_NUMBER}/BUILD_${BUILD_ID} --variable_project_id ${PROJECT_ID} --variable_region ${_GCP_REGION} --variable_service_account ${_GCP_SERVICE_ACCOUNT} --variable_vpc_network "${_GPC_VPC_NETWORK_NAME}" `if [ ! -z "${_PRIVATE_POOL_NAME}" ]; then echo "--private_pool_id ${_PRIVATE_POOL_NAME}"; fi`
env:
- 'IS_TESTING=1'
timeout: 86400s
+1 -5
View File
@@ -3,15 +3,11 @@ numpy
jupyter
nbconvert
papermill
pandas
matplotlib
tabulate
google-cloud-aiplatform
google-cloud-storage
google-cloud-build
google-cloud-storage
ratemate
GitPython
tqdm
fsspec
pandas
-40
View File
@@ -1,40 +0,0 @@
notebooks/official/training/pytorch_gcs_data_training.ipynb
notebooks/official/custom/custom_training_tensorboard_profiler.ipynb
notebooks/official/custom/custom-tabular-bq-managed-dataset.ipynb
notebooks/official/ml_metadata/sdk-metric-parameter-tracking-for-locally-trained-models.ipynb
notebooks/official/ml_metadata/sdk-metric-parameter-tracking-for-custom-jobs.ipynb
notebooks/official/tabnet/tabnet_vertex_tutorial.ipynb
notebooks/official/tabnet/get_started_with_tabnet.ipynb
notebooks/official/pipelines/google_cloud_pipeline_components_automl_text.ipynb
notebooks/official/pipelines/multicontender_vs_champion_deployment_method.ipynb
notebooks/official/pipelines/google_cloud_pipeline_components_automl_images.ipynb
notebooks/official/pipelines/rapid_prototyping_bqml_automl.ipynb
notebooks/official/pipelines/challenger_vs_blessed_deployment_method.ipynb
notebooks/official/matching_engine/sdk_matching_engine_create_stack_overflow_embeddings.ipynb
notebooks/official/matching_engine/sdk_matching_engine_for_indexing.ipynb
notebooks/official/matching_engine/sdk_matching_engine_create_text_to_image_embeddings.ipynb
notebooks/official/explainable_ai/sdk_custom_image_classification_online_explain.ipynb
notebooks/official/explainable_ai/xai_image_classification_feature_attributions.ipynb
notebooks/official/explainable_ai/sdk_custom_image_classification_batch_explain.ipynb
notebooks/official/tabular_workflows/tabnet_on_vertex_pipelines.ipynb
notebooks/official/model_registry/get_started_with_model_registry.ipynb
notebooks/official/model_registry/bqml_vertexai_model_registry.ipynb
notebooks/official/sdk/SDK_Custom_Training_Python_Package_Managed_Text_Dataset_Tensorflow_Serving_Container.ipynb
notebooks/official/model_monitoring/batch_prediction_model_monitoring.ipynb
notebooks/official/model_monitoring/get_started_with_model_monitoring_setup.ipynb
notebooks/official/model_monitoring/get_started_with_model_monitoring_custom.ipynb
notebooks/official/model_monitoring/get_started_with_model_monitoring_custom_tf_serving.ipynb
notebooks/official/model_monitoring/model_monitoring.ipynb
notebooks/official/tensorboard/tensorboard_profiler_custom_training_with_prebuilt_container.ipynb
notebooks/official/tensorboard/tensorboard_hyperparameter_tuning_with_hparams.ipynb
notebooks/official/tensorboard/tensorboard_profiler_custom_training.ipynb
notebooks/official/model_evaluation/custom_tabular_regression_model_evaluation.ipynb
notebooks/official/model_evaluation/custom_tabular_classification_model_evaluation.ipynb
notebooks/official/model_evaluation/automl_video_classification_model_evaluation.ipynb
notebooks/official/experiments/comparing_local_trained_models.ipynb
notebooks/official/automl/automl_image_classification_online_online_prediction.ipynb
notebooks/official/automl/automl-text-classification.ipynb
notebooks/official/automl/sdk_automl_video_object_tracking_batch.ipynb
notebooks/official/feature_store/sdk-feature-store-pandas.ipynb
notebooks/official/prediction/custom_batch_prediction_feature_filter.ipynb
notebooks/official/prediction/pytorch_image_classification_with_prebuilt_serving_containers.ipynb
-80
View File
@@ -1,80 +0,0 @@
notebooks/official/training/hyperparameter_tuning_tensorflow.ipynb
notebooks/official/training/get_started_with_vertex_distributed_training.ipynb
notebooks/official/training/hyperparameter_tuning_xgboost.ipynb
notebooks/official/training/multi_node_ddp_gloo_vertex_training_with_custom_container.ipynb
notebooks/official/training/distributed_hyperparameter_tuning.ipynb
notebooks/official/training/pytorch-text-sentiment-classification-custom-train-deploy.ipynb
notebooks/official/training/xgboost_data_parallel_training_on_cpu_using_dask.ipynb
notebooks/official/training/multi_node_ddp_nccl_vertex_training_with_custom_container.ipynb
notebooks/official/bigquery_ml/get_started_with_bqml_training.ipynb
notebooks/official/bigquery_ml/bqml-online-prediction.ipynb
notebooks/official/custom/custom_training_container_and_model_registry.ipynb
notebooks/official/custom/sdk-custom-image-classification-online.ipynb
notebooks/official/custom/sdk-custom-image-classification-batch.ipynb
notebooks/official/custom/SDK_FBProphet_Forecasting_Online.ipynb
notebooks/official/custom/get_started_vertex_training_xgboost.ipynb
notebooks/official/custom/get_started_with_vertex_endpoint_and_shared_vm.ipynb
notebooks/official/custom/SDK_Custom_Container_Prediction.ipynb
notebooks/official/reduction_server/pytorch_distributed_training_reduction_server.ipynb
notebooks/official/tabnet/ai-explanations-tabnet-algorithm.ipynb
notebooks/official/vizier/get_started_vertex_vizier.ipynb
notebooks/official/vizier/gapic-vizier-multi-objective-optimization.ipynb
notebooks/official/pipelines/get_started_with_hpt_pipeline_components.ipynb
notebooks/official/pipelines/google_cloud_pipeline_components_automl_tabular.ipynb
notebooks/official/pipelines/custom_tabular_train_batch_pred_bq_pipeline.ipynb
notebooks/official/pipelines/metrics_viz_run_compare_kfp.ipynb
notebooks/official/pipelines/google_cloud_pipeline_components_model_upload_predict_evaluate.ipynb
notebooks/official/pipelines/google_cloud_pipeline_components_model_train_upload_deploy.ipynb
notebooks/official/pipelines/get_started_with_machine_management.ipynb
notebooks/official/pipelines/custom_model_training_and_batch_prediction.ipynb
notebooks/official/pipelines/control_flow_kfp.ipynb
notebooks/official/pipelines/lightweight_functions_component_io_kfp.ipynb
notebooks/official/pipelines/google_cloud_pipeline_components_bqml_text.ipynb
notebooks/official/pipelines/pipelines_intro_kfp.ipynb
notebooks/official/pipelines/automl_tabular_classification_beans.ipynb
notebooks/official/pipelines/google_cloud_pipeline_components_dataproc_tabular.ipynb
notebooks/official/explainable_ai/sdk_automl_tabular_classification_online_explain.ipynb
notebooks/official/explainable_ai/sdk_custom_tabular_regression_online_explain.ipynb
notebooks/official/explainable_ai/sdk_automl_tabular_binary_classification_batch_explain.ipynb
notebooks/official/explainable_ai/sdk_custom_tabular_regression_online_explain_get_metadata.ipynb
notebooks/official/explainable_ai/sdk_custom_tabular_regression_batch_explain.ipynb
notebooks/official/tabular_workflows/prophet_on_vertex_pipelines.ipynb
notebooks/official/tabular_workflows/wide_and_deep_on_vertex_pipelines.ipynb
notebooks/official/sdk/SDK_AutoML_Video_Classification.ipynb
notebooks/official/model_monitoring/get_started_with_model_monitoring_automl.ipynb
notebooks/official/model_monitoring/get_started_with_model_monitoring_automl_image_batch.ipynb
notebooks/official/model_monitoring/get_started_with_model_monitoring_automl_image_online.ipynb
notebooks/official/model_monitoring/get_started_with_model_monitoring_xgboost.ipynb
notebooks/official/tensorboard/tensorboard_custom_training_with_custom_container.ipynb
notebooks/official/tensorboard/tensorboard_custom_training_with_prebuilt_container.ipynb
notebooks/official/tensorboard/tensorboard_vertex_ai_pipelines_integration.ipynb
notebooks/official/model_evaluation/automl_text_classification_model_evaluation.ipynb
notebooks/official/model_evaluation/get_started_with_custom_model_evaluation_import.ipynb
notebooks/official/model_evaluation/automl_tabular_classification_model_evaluation.ipynb
notebooks/official/model_evaluation/automl_tabular_regression_model_evaluation.ipynb
notebooks/official/experiments/get_started_with_vertex_experiments.ipynb
notebooks/official/experiments/comparing_pipeline_runs.ipynb
notebooks/official/experiments/get_started_with_vertex_experiments_autologging.ipynb
notebooks/official/experiments/build_model_experimentation_lineage_with_prebuild_code.ipynb
notebooks/official/experiments/delete_outdated_tensorboard_experiments.ipynb
notebooks/official/automl/sdk_automl_tabular_regression_batch_bq.ipynb
notebooks/official/automl/sdk_automl_text_sentiment_analysis_online.ipynb
notebooks/official/automl/sdk_automl_text_entity_extraction_online.ipynb
notebooks/official/automl/sdk_automl_forecasting_hierarchical_batch.ipynb
notebooks/official/automl/automl_text_entity_extraction_batch_prediction.ipynb
notebooks/official/automl/automl_image_classification_batch_prediction.ipynb
notebooks/official/automl/automl_text_sentiment_analysis_batch_prediction.ipynb
notebooks/official/automl/sdk_automl_tabular_regression_online_bq.ipynb
notebooks/official/automl/get_started_automl_training.ipynb
notebooks/official/automl/automl-tabular-classification.ipynb
notebooks/official/automl/automl_image_object_detection_export_edge.ipynb
notebooks/official/automl/sdk_automl_image_object_detection_batch.ipynb
notebooks/official/automl/automl_tabular_on_vertex_pipelines.ipynb
notebooks/official/automl/sdk_automl_video_classification_batch.ipynb
notebooks/official/automl/sdk_automl_video_action_recognition_batch.ipynb
notebooks/official/automl/sdk_automl_tabular_forecasting_batch.ipynb
notebooks/official/automl/automl_image_object_detection_online_prediction.ipynb
notebooks/official/automl/automl_forecasting_bqml_arima_plus_comparison.ipynb
notebooks/official/datasets/get_started_bq_datasets.ipynb
notebooks/official/datasets/get_started_with_data_labeling.ipynb
notebooks/official/feature_store/feature_store_streaming_ingestion_sdk.ipynb
-46
View File
@@ -1,46 +0,0 @@
# grep PASSED tests.txt | cut -c 10-100 >passed.txt
import os
repo_dir = '/home/jupyter/vertex-ai-samples/'
repo_dir_len = len(repo_dir)
official_dir = repo_dir + 'notebooks/official'
entries = os.scandir(official_dir)
folders = []
for entry in entries:
if entry.is_dir():
folders.append(entry.path)
# Passing
with open('passed.txt', 'r') as pass_file:
notebook_names = pass_file.readlines()
notebooks = []
for folder in folders:
entries = os.scandir(folder)
for entry in entries:
for notebook in notebook_names:
if entry.name == notebook.rstrip():
notebooks.append(entry.path[repo_dir_len:])
with open('passing_tests.txt', 'w') as f:
for notebook in notebooks:
f.write(notebook + '\n')
# Failing
with open('failed.txt', 'r') as fail_file:
notebook_names = fail_file.readlines()
notebooks = []
for folder in folders:
entries = os.scandir(folder)
for entry in entries:
for notebook in notebook_names:
if entry.name == notebook.rstrip():
notebooks.append(entry.path[repo_dir_len:])
with open('failing_tests.txt', 'w') as f:
for notebook in notebooks:
f.write(notebook + '\n')
@@ -1,33 +0,0 @@
import sys
from execute_changed_notebooks_helper import (load_results, select_notebook)
def test_load_results():
bucket: str = "cloud-build-notebooks-presubmit"
bucket_file: str = "build_results"
accum = load_results(bucket, bucket_file)
print(accum)
assert len(accum) > 0
def test_select_notebook():
bucket: str = "cloud-build-notebooks-presubmit"
bucket_file: str = "build_results"
accum = load_results(bucket, bucket_file)
n_select = 0
n_notselect = 0
for notebook in accum:
if select_notebook(notebook, accum, 50):
n_select += 1
else:
n_notselect += 1
print(f"SELECTED {n_select}, NOT SELECTED {n_notselect}")
assert n_select > 0
assert n_notselect > 0
@@ -1,22 +0,0 @@
'''
Viewer for the weekly regression testing of the official notebooks
Cloud Storage location: gs://cloud-build-notebooks-presubmit/build_results/
'''
import argparse
import json
parser = argparse.ArgumentParser()
parser.add_argument('--file', dest='file',
default='build.json', type=str, help='build results file')
import json
with open('build.json', 'r') as f:
results = json.load(f)
for item in results.items():
if item[1]['passed']:
print(f"{item[0]},PASSED")
else:
print(f"{item[0]},FAILED")
@@ -1,23 +0,0 @@
steps:
# Fetch full repo for diff purposes
- name: gcr.io/cloud-builders/git
args: [fetch, --unshallow, --quiet]
# Create a virtual environment
- name: ${_PYTHON_IMAGE}
entrypoint: /bin/sh
args:
- -c
- python3 -m venv workspace/env
# Install Python dependencies and run testing script
- name: ${_PYTHON_IMAGE}
entrypoint: /bin/sh
args:
- -c
- |
. workspace/env/bin/activate &&
python3 notebooks/notebook_template_review.py --web --title --steps --desc --linkback --notebook-dir=notebooks/official >web.html
artifacts:
objects:
location: gs://${_GCS_ARTIFACTS_BUCKET}/webdoc
paths: ['web.html']
timeout: 86400s
+1 -1
View File
@@ -4,7 +4,7 @@
# 2. To lint specific notebooks:
# docker run -v ${PWD}:/setup/app gcr.io/python-docs-samples-tests/notebook_linter:latest notebooks/1.ipynb notebooks/2.ipynb
FROM python:3.11
FROM python:3.10
WORKDIR setup
+5 -5
View File
@@ -2,9 +2,9 @@ git+https://github.com/tensorflow/docs
ipython
jupyter
nbconvert
black==23.3.0
pyupgrade==3.7.0
isort==5.12.0
flake8==6.0.0
nbqa==1.7.0
black==22.10.0
pyupgrade==2.38.4
isort==5.10.1
flake8==4.0.1
nbqa==1.5.3
+2 -2
View File
@@ -84,7 +84,7 @@ if [ ${#notebooks[@]} -gt 0 ]; then
# python3 -m nbqa black "$notebook" --check
# BLACK_RTN=$?
echo "Running pyupgrade..."
python3 -m nbqa pyupgrade --exit-zero-even-if-changed "$notebook"
python3 -m nbqa pyupgrade "$notebook"
PYUPGRADE_RTN=$?
echo "Running isort..."
python3 -m nbqa isort "$notebook" --check
@@ -97,7 +97,7 @@ if [ ${#notebooks[@]} -gt 0 ]; then
python3 -m nbqa black "$notebook"
BLACK_RTN=$?
echo "Running pyupgrade..."
python3 -m nbqa pyupgrade --exit-zero-even-if-changed "$notebook"
python3 -m nbqa pyupgrade "$notebook"
PYUPGRADE_RTN=$?
echo "Running isort..."
python3 -m nbqa isort "$notebook"
+5 -3
View File
@@ -44,10 +44,12 @@ Finally, run this code block to check for errors. Each step will attempt to
automatically fix any issues. If the fixes can't be performed automatically,
then you will need to manually address them before submitting your PR.
Note: For official, only submit one notebook per PR.
```shell
docker run -v ${PWD}:/setup/app gcr.io/cloud-devrel-public-resources/notebook_linter:latest your_notebook
nbqa black "$notebook"
nbqa pyupgrade "$notebook"
nbqa isort "$notebook"
nbqa flake8 "$notebook" --extend-ignore=W391,E501,F821,E402,F404,W503,E203,E722,W293,W291
python3 -m tensorflow_docs.tools.nbfmt --remove_outputs "$notebook"
```
## Code Reviews
-12
View File
@@ -9,15 +9,3 @@
/Train_tabular_models_with_many_frameworks_and_import_to_Vertex_AI_using_Pipelines @Ark-kun
/pipeline_components @Ark-kun
/pipeline_components/image_ml_model_training @lakeyk
/prediction_featurestore_integration @googleapis/vertex-prediction-team
/vertex_vision_model_garden/model_oss/util @weigary
/vertex_vision_model_garden/model_oss/diffusers @weigary
/vertex_vision_model_garden/model_oss/keras @dstnluong-google
/vertex_vision_model_garden/model_oss/transformers @dstnluong-google
/vertex_vision_model_garden/model_oss/pic2word @jismailyan-google
/vertex_vision_model_garden/model_oss/open_clip @lydhr
/vertex_vision_model_garden/model_oss/movinet @KCFindstr
/vertex_vision_model_garden/model_oss/data_converter @KCFindstr
/vertex_vision_model_garden/model_oss/peft @weigary
/vertex_vision_model_garden/model_oss/lm-evaluation-harness @kathyyu-google
@@ -9,7 +9,7 @@ binarize_column_using_Pandas_on_CSV_data_op = components.load_component_from_url
split_rows_into_subsets_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/dataset_manipulation/Split_rows_into_subsets/in_CSV/component.yaml")
train_XGBoost_model_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/XGBoost/Train/component.yaml")
xgboost_predict_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/XGBoost/Predict/component.yaml")
upload_XGBoost_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/d5c9918850a6cc70004c4269dae066cfe2e664eb/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_XGBoost_model/component.yaml")
upload_XGBoost_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_XGBoost_model/component.yaml")
deploy_model_to_endpoint_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Deploy_to_endpoint/component.yaml")
# %% Pipeline definition
@@ -23,7 +23,7 @@ upload_PyTorch_model_archive_to_Google_Cloud_Vertex_AI_op = components.load_comp
# XGBoost
train_XGBoost_model_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/XGBoost/Train/component.yaml")
xgboost_predict_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/XGBoost/Predict/component.yaml")
upload_XGBoost_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/d5c9918850a6cc70004c4269dae066cfe2e664eb/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_XGBoost_model/component.yaml")
upload_XGBoost_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_XGBoost_model/component.yaml")
# Scikit-learn
#train_linear_regression_model_using_scikit_learn_from_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/1f5cf6e06409b704064b2086c0a705e4e6b4fcde/community-content/pipeline_components/ML_frameworks/Scikit_learn/Train_linear_regression_model/from_CSV/component.yaml")
@@ -8,7 +8,7 @@ fill_all_missing_values_using_Pandas_on_CSV_data_op = components.load_component_
split_rows_into_subsets_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/dataset_manipulation/Split_rows_into_subsets/in_CSV/component.yaml")
train_XGBoost_model_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/XGBoost/Train/component.yaml")
xgboost_predict_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/XGBoost/Predict/component.yaml")
upload_XGBoost_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/d5c9918850a6cc70004c4269dae066cfe2e664eb/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_XGBoost_model/component.yaml")
upload_XGBoost_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_XGBoost_model/component.yaml")
deploy_model_to_endpoint_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Deploy_to_endpoint/component.yaml")
# %% Pipeline definition
@@ -22,7 +22,7 @@ upload_PyTorch_model_archive_to_Google_Cloud_Vertex_AI_op = components.load_comp
# XGBoost
train_XGBoost_model_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/XGBoost/Train/component.yaml")
xgboost_predict_on_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/XGBoost/Predict/component.yaml")
upload_XGBoost_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/d5c9918850a6cc70004c4269dae066cfe2e664eb/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_XGBoost_model/component.yaml")
upload_XGBoost_model_to_Google_Cloud_Vertex_AI_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/399405402d95f4a011e2d2e967c96f8508ba5688/community-content/pipeline_components/google-cloud/Vertex_AI/Models/Upload_XGBoost_model/component.yaml")
# Scikit-learn
train_linear_regression_model_using_scikit_learn_from_CSV_op = components.load_component_from_url("https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/1f5cf6e06409b704064b2086c0a705e4e6b4fcde/community-content/pipeline_components/ML_frameworks/Scikit_learn/Train_linear_regression_model/from_CSV/component.yaml")
@@ -64,8 +64,8 @@ implementation:
labels["component-source"] = "github-com-ark-kun-pipeline-components"
# The serving container decides the model type based on the model file extension.
# So we need to rename the mode file (e.g. /tmp/inputs/model/data) to *.bst
_, renamed_model_path = tempfile.mkstemp(suffix=".bst")
# So we need to rename the mode file (e.g. /tmp/inputs/model/data) to *.pkl
_, renamed_model_path = tempfile.mkstemp(suffix=".pkl")
shutil.copyfile(src=model_path, dst=renamed_model_path)
model = aiplatform.Model.upload_xgboost_model_file(
@@ -87,7 +87,7 @@ outputs:
- {name: image_size_path, type: HeightWidth}
implementation:
container:
image: us-docker.pkg.dev/vertex-ai/ready-to-go-image-classification/image-components:v0.2
image: us-docker.pkg.dev/vertex-ai/ready-to-go-image-classification/image-components:v0.1
# command is a list of strings (command-line arguments).
# The YAML language has two syntaxes for lists and you can use either of them.
# Here we use the "flow syntax" - comma-separated strings inside square brackets.
@@ -109,4 +109,4 @@ implementation:
{inputValue: l2_regularization_penalty},
--image-size-path,
{outputPath: image_size_path},
]
]
@@ -34,7 +34,7 @@ outputs:
path for the validation data,'}
implementation:
container:
image: us-docker.pkg.dev/vertex-ai/ready-to-go-image-classification/image-components:v0.2
image: us-docker.pkg.dev/vertex-ai/ready-to-go-image-classification/image-components:v0.1
# command is a list of strings (command-line arguments).
# The YAML language has two syntaxes for lists and you can use either of them.
# Here we use the "flow syntax" - comma-separated strings inside square brackets.
@@ -55,7 +55,7 @@ outputs:
for the saved model,'}
implementation:
container:
image: us-docker.pkg.dev/vertex-ai/ready-to-go-image-classification/image-components:v0.2
image: us-docker.pkg.dev/vertex-ai/ready-to-go-image-classification/image-components:v0.1
# command is a list of strings (command-line arguments).
# The YAML language has two syntaxes for lists and you can use either of them.
# Here we use the "flow syntax" - comma-separated strings inside square brackets.
@@ -20,7 +20,7 @@ outputs:
path for the TFRecord image data}
implementation:
container:
image: us-docker.pkg.dev/vertex-ai/ready-to-go-image-classification/image-components:v0.2
image: us-docker.pkg.dev/vertex-ai/ready-to-go-image-classification/image-components:v0.1
# command is a list of strings (command-line arguments).
# The YAML language has two syntaxes for lists and you can use either of them.
# Here we use the "flow syntax" - comma-separated strings inside square brackets.
@@ -22,7 +22,7 @@ outputs:
path for the TFRecord image data}
implementation:
container:
image: us-docker.pkg.dev/vertex-ai/ready-to-go-image-classification/image-components:v0.2
image: us-docker.pkg.dev/vertex-ai/ready-to-go-image-classification/image-components:v0.1
# command is a list of strings (command-line arguments).
# The YAML language has two syntaxes for lists and you can use either of them.
# Here we use the "flow syntax" - comma-separated strings inside square brackets.
@@ -1,3 +1,3 @@
torch==1.13.1
torch==1.8.1
torchvision==0.9.1
tensorboard==2.5.0
@@ -1,3 +1,3 @@
torch==1.13.1
torch==1.8.1
torchvision==0.9.1
tensorboard==2.5.0
@@ -31,7 +31,17 @@
"source": [
"# Deploying a PyTorch Text Classification Model on [Vertex AI](https://cloud.google.com/vertex-ai)\n",
"\n",
"**Kindly reach out to Vertex AI before you run any scale tests or you have any questions.**\n"
"**This is an Experimental release**, covered by the Pre-GA Offerings Terms of your Google Cloud Platform [Terms of Service](https://cloud.google.com/terms).\n",
"\n",
"Experiments are focused on validating a prototype and are not guaranteed to be released. They are not intended for production use or covered by any SLA, support obligation, or deprecation policy and might be subject to backward-incompatible changes.\n",
"\n",
"**Kindly drop us a note before you run any scale tests.**\n",
"\n",
"**Do not hesitate to contact vertexai-prediction-preview-feedback@google.com if you have any questions or run into any issues.**\n",
"\n",
"The usage of the product is free during the Experimental release period: you will still incur charges for other GCP products usage, such as storage.\n",
"\n",
"The projects need to be added to the allowlist in order to deploy PyTorch models using Vertex AI Prediction pre-built PyTorch images. If you are interested in the feature, please send an email to vertexai-prediction-preview-feedback@google.com to provide your project numbers OR project ids."
]
},
{
@@ -1,4 +0,0 @@
[MASTER]
generated-members=get_concrete_function,cv2.*
ignored-modules=tensorflow,google.cloud
@@ -1,623 +0,0 @@
"""Library with functions to use for data conversion."""
import json
import os
import random
from typing import Any, Callable, Dict, Iterable, List, Optional, Sequence, Tuple, Union
import uuid
from absl import logging
import apache_beam as beam
import cv2
import numpy as np
import pandas as pd
import PIL
from PIL import Image
import tensorflow as tf
import yaml
from util import constants
from util import fileutils
from apache_beam.options import pipeline_options
REFORMATTED_CSV_SUFFIX = '-reformatted.csv'
LABEL_MAP_NAME = 'label_map.yaml'
_SPLIT_RATIO_ERROR_THRESHOLD = 1e-5
# Internal constant. Only for distinguishing rows without ML use.
ML_USE_UNASSIGNED = 'unassigned'
ALL_ML_USES = (
constants.ML_USE_TRAINING,
constants.ML_USE_VALIDATION,
constants.ML_USE_TEST,
ML_USE_UNASSIGNED,
)
COLUMN_NAME_ML_USE = 'ml_use'
COLUMN_NAME_GCS_FILE_PATH = 'gcs_file_path'
COLUMN_NAME_LABEL = 'label'
COLUMN_NAME_START_SEC = 'start_sec'
COLUMN_NAME_END_SEC = 'end_sec'
# Output filenames
TRAIN_TFRECORD_NAME = 'train.tfrecord'
VALIDATION_TFRECORD_NAME = 'val.tfrecord'
TEST_TFRECORD_NAME = 'test.tfrecord'
# Jsonl keys
JSON_GCS_URI_KEY = 'imageGcsUri'
JSON_RESOURCE_LABEL_KEY = 'dataItemResourceLabels'
JSON_ML_USE_KEY = 'aiplatform.googleapis.com/ml_use'
# I/O parameters
READ_CHUNK_SIZE = 1024 * 1024 * 1024 # 1GB
class WriteToTFRecord(beam.DoFn):
"""DoFn to write TF examples to sharded TF record files."""
def __init__(
self,
output_prefix: str,
num_shards: int,
convert_fn: Callable[[Dict[str, Any]], tf.train.Example],
):
self.output_prefix = output_prefix
self.num_shards = num_shards
self.writer: list[tf.io.TFRecordWriter] = []
self.sharded_files: list[str] = []
self.convert_fn = convert_fn
self.success_counter = beam.metrics.Metrics.counter(
self.__class__.__name__, 'Success'
)
self.failure_counter = beam.metrics.Metrics.counter(
self.__class__.__name__, 'Failure'
)
def start_bundle(self):
logging.info('Start writing TF Record to %s.', self.output_prefix)
unique_str = uuid.uuid4().hex
for i in range(self.num_shards):
uri = f'{self.output_prefix}-{i}-{unique_str}'
self.sharded_files.append(uri)
self.writer.append(tf.io.TFRecordWriter(uri))
def process(self, data: Dict[str, Any]) -> Iterable[Tuple[int, str]]:
try:
example = self.convert_fn(data)
data = example.SerializeToString()
idx = hash(data) % self.num_shards
self.writer[idx].write(data)
self.success_counter.inc()
yield (idx, self.sharded_files[idx])
# pylint: disable-next=broad-exception-caught
except Exception as err:
logging.error('Failed to process %s', data)
logging.exception(err)
self.failure_counter.inc()
def finish_bundle(self):
logging.info('Finish writing TF Record to %s.', self.output_prefix)
for writer in self.writer:
writer.close()
self.writer = []
def convert_to_feature(
value: Union[List[Union[int, float, bytes]], int, float, bytes],
value_type: Optional[str] = None,
) -> tf.train.Feature:
"""Converts the given python object to a tf.train.Feature.
This is copied from tensorflow_models/official/vision/data/tfrecord_lib.py.
Args:
value: int, float, bytes or a list of them.
value_type: optional, if specified, forces the feature to be of the given
type. Otherwise, type is inferred automatically. Can be one of ['bytes',
'int64', 'float', 'bytes_list', 'int64_list', 'float_list']
Returns:
feature: A tf.train.Feature object.
"""
if value_type is None:
element = value[0] if isinstance(value, list) else value
if isinstance(element, bytes):
value_type = 'bytes'
elif isinstance(element, (int, np.integer)):
value_type = 'int64'
elif isinstance(element, (float, np.floating)):
value_type = 'float'
else:
raise ValueError(
'Cannot convert type {} to feature'.format(type(element))
)
if isinstance(value, list):
value_type = value_type + '_list'
if value_type == 'int64':
return tf.train.Feature(int64_list=tf.train.Int64List(value=[value]))
elif value_type == 'int64_list':
value = np.asarray(value).astype(np.int64).reshape(-1)
return tf.train.Feature(int64_list=tf.train.Int64List(value=value))
elif value_type == 'float':
return tf.train.Feature(float_list=tf.train.FloatList(value=[value]))
elif value_type == 'float_list':
value = np.asarray(value).astype(np.float32).reshape(-1)
return tf.train.Feature(float_list=tf.train.FloatList(value=value))
elif value_type == 'bytes':
return tf.train.Feature(bytes_list=tf.train.BytesList(value=[value]))
elif value_type == 'bytes_list':
return tf.train.Feature(bytes_list=tf.train.BytesList(value=value))
else:
raise ValueError('Unknown value_type parameter - {}'.format(value_type))
def convert_to_string_feature(
value: str, encoding: str = 'utf-8'
) -> tf.train.Feature:
"""Returns a bytes_list from an encoded string."""
return convert_to_feature(value.encode(encoding))
def convert_to_list_string_feature(
lst: list[str], encoding: str = 'utf-8'
) -> tf.train.Feature:
"""Returns a bytes_list from a list of encoded strings."""
return convert_to_feature([value.encode(encoding) for value in lst])
def create_ml_use_array_with_split(
total_size: int,
split_ratio: Sequence[float],
) -> list[str]:
"""Create randomized list of 'training', 'validation', 'test'.
The list of will be of length total_size with ratios according to train_size,
validation_size, and test_size.
Args:
total_size: Length of sequence to return
split_ratio: Proportions to split into 'training', 'validation', and 'test'
Returns:
List containing 'training', 'validation', and 'test'
"""
train_size, validation_size, _ = split_ratio
num_train = round(train_size * total_size)
num_validation = round(validation_size * total_size)
num_test = total_size - num_train - num_validation
ml_use_row = (
[constants.ML_USE_TRAINING] * num_train
+ [constants.ML_USE_VALIDATION] * num_validation
+ [constants.ML_USE_TEST] * num_test
)
random.shuffle(ml_use_row)
return ml_use_row
def format_ml_use_column(df: pd.DataFrame):
df[COLUMN_NAME_ML_USE].replace(
# We need to support non-standard ML uses other than documented ones,
# since they are used by some existing datasets.
[r'(?i)^train(ing)?$', r'(?i)^test$', r'(?i)^validat(ion|e)$'],
[
constants.ML_USE_TRAINING,
constants.ML_USE_TEST,
constants.ML_USE_VALIDATION,
],
inplace=True,
regex=True,
)
def insert_missing_ml_use(df: pd.DataFrame) -> None:
"""For every row that does not have ml_use as the first column, insert a column containing 'unassigned' to the front.
Args:
df: The DataFrame to process. The first column should be 'ml_use'.
"""
df[COLUMN_NAME_ML_USE].fillna(ML_USE_UNASSIGNED, inplace=True)
rows_to_fill = ~df[COLUMN_NAME_ML_USE].isin(ALL_ML_USES)
df.loc[rows_to_fill] = df[rows_to_fill].shift(
axis=1, fill_value=ML_USE_UNASSIGNED
)
def replace_unassigned_ml_use(
ml_uses: List[str],
split_ratio: Sequence[float],
):
"""Replace `unassigned` in ml_uses with `training`, `validation`, and `test` with ratios according to split_ratio.
Args:
ml_uses: List of ml_use string values.
split_ratio: Proportions to split into `training`, `validation`, and `test`.
"""
unassigned_indices = [
i for i, ml_use in enumerate(ml_uses) if ml_use == ML_USE_UNASSIGNED
]
ml_use_arr = create_ml_use_array_with_split(
len(unassigned_indices), split_ratio
)
for unassigned_index, ml_use in zip(unassigned_indices, ml_use_arr):
ml_uses[unassigned_index] = ml_use
def merge_seq_into_dicts(
key: str, values: Sequence[Any], dicts: Sequence[Dict[Any, Any]]
):
"""Merges a list of values into a list of dicts, inserted with the given key.
Args:
key: Key to insert or overwrite in the dictionary.
values: A list of values to insert.
dicts: A list of dictionaries. Each value will be inserted into the
corresponding dictionary. The original value will be overwritten if the
key already existed.
Raises:
ValueError: The values and dicts have different lengths.
"""
if len(values) != len(dicts):
raise ValueError(
f'Length of values and dicts must match, got {len(values)} and'
f' {len(dicts)}'
)
for val, d in zip(values, dicts):
d[key] = val
def drop_invalid_rows(df: pd.DataFrame) -> int:
"""Drops DataFrame rows missing the gcs_file_path column or the label column.
Args:
df: The DataFrame to process in place.
Returns:
The number of rows dropped.
"""
original_rows = df.shape[0]
df.dropna(subset=[COLUMN_NAME_GCS_FILE_PATH, COLUMN_NAME_LABEL], inplace=True)
dropped_num = original_rows - df.shape[0]
if dropped_num > 0:
df.reset_index(drop=True, inplace=True)
return dropped_num
def check_split_ratio(split_ratio: Sequence[float]):
"""Checks if the give split ratio is valid.
Args:
split_ratio: Proportions to split into 'training', 'validation', and 'test'
Raises:
ValueError: Must have valid entries, correct length, and sum to 1.
"""
if len(split_ratio) != 3:
raise ValueError('split_ratio must contain exactly 3 values.')
if abs(sum(split_ratio) - 1) > _SPLIT_RATIO_ERROR_THRESHOLD:
raise ValueError('split_ratio must sum to 1.')
if not all([0 <= val <= 1 for val in split_ratio]):
raise ValueError('Entries of split_ratio must be in the range [0, 1].')
def check_num_shard(num_shard: Sequence[int]):
"""Checks if the number of shards is valid.
Args:
num_shard: The number of shards for each tfrecord.
Raises:
ValueError: Must have valid entries and correct length.
"""
if len(num_shard) != 3:
raise ValueError('num_shard must contain exactly 3 values.')
if not all([val >= 1 for val in num_shard]):
raise ValueError('Shards must be at least 1.')
def create_label_map_yaml(meta_data_path: str, output_dir: str) -> None:
"""Generate label_map.yaml from meta_data.yaml.
Args:
meta_data_path: Path to a meta_data.yaml file.
output_dir: Directory to output label_map.yaml.
"""
tf.io.gfile.copy(
meta_data_path, os.path.join(output_dir, LABEL_MAP_NAME), overwrite=True
)
def reformat_bbox(
bbox: Sequence[int], img_width: int, img_height: int
) -> Tuple[float, float, float, float]:
"""Converts XYWH unnormalized bounding box with to a normalized XYXY bounding box.
Args:
bbox: Relative bounding box with unnormalized coordinates as [x, y, width,
height].
img_width: Image's pixel width.
img_height: Image's pixel height.
Returns:
Absolute bounding box with normalized coordinates as
[xmin, ymin, xmax, ymax].
"""
x, y, width, height = bbox
xmin = x / img_width
ymin = y / img_height
xmax = (x + width) / img_width
ymax = (y + height) / img_height
return xmin, ymin, xmax, ymax
def encode_image(
filepath: str,
output_shape: Optional[Sequence[int]] = None,
image_format: str = 'png',
) -> Tuple[bytes, Sequence[int]]:
"""Encodes an image at the given path.
Args:
filepath: Path to the image.
output_shape: The output shape of the image, (height, width).
image_format: The format of the output image.
Returns:
The encoded image data in bytes and the shape of the image, (height, width).
Raises:
IOError: The image file is corrupt.
"""
filepath = fileutils.force_gcs_fuse_path(filepath)
with open(filepath, 'rb') as f:
# If an output_shape is specified, resize the image and set data to the new
# bytes.
try:
img = Image.open(f)
except PIL.UnidentifiedImageError as e:
raise IOError(f'Failed to open {filepath}') from e
try:
if output_shape is not None:
rgb_img = img.resize((output_shape[1], output_shape[0])).convert('RGB')
else:
rgb_img = img.convert('RGB')
rgb_img = np.array(rgb_img)
_, data = cv2.imencode(f'.{image_format}', rgb_img)
data = data.tobytes()
return data, rgb_img.shape
except cv2.error as e:
raise IOError(f'Failed to encode {filepath}') from e
finally:
img.close()
def encode_video(
filepath: str,
start_sec: float,
end_sec: float,
output_fps: int = 5,
output_shape: Optional[Sequence[int]] = None,
image_format: str = 'jpg',
) -> Sequence[bytes]:
"""Encodes a video clip at the given path with start and end timestamps.
Args:
filepath: Path to the video.
start_sec: Start timestamp of the video clip in seconds.
end_sec: End timestamp of the video clip in seconds.
output_fps: The output frame rate per second.
output_shape: The output shape of each frame, (height, width).
image_format: The format of the encoded frames.
Returns:
A list of the encoded frames data in bytes.
Raises:
IOError if the video file is corrupt.
"""
filepath = fileutils.force_gcs_fuse_path(filepath)
video = None
try:
video = cv2.VideoCapture(filepath)
frames = []
frame_interval = 1 / output_fps
total_frames = video.get(cv2.CAP_PROP_FRAME_COUNT)
original_fps = video.get(cv2.CAP_PROP_FPS)
if not original_fps:
# 0 or None indicates the video is invalid
raise IOError(f'Failed to load {filepath}')
video_length = total_frames / original_fps
start_sec = max(start_sec, 0)
end_sec = min(end_sec, video_length)
for t in np.arange(start_sec, end_sec, frame_interval):
frame_idx = min(total_frames - 1, round(t * original_fps))
video.set(cv2.CAP_PROP_POS_FRAMES, frame_idx)
ret, frame = video.read()
if not ret:
raise IOError(f'Failed to load {filepath} at frame {frame_idx}')
if output_shape is not None:
frame = cv2.resize(frame, (output_shape[1], output_shape[0]))
_, data = cv2.imencode(f'.{image_format}', frame)
frames.append(data.tobytes())
except cv2.error as e:
raise IOError(f'Failed to load {filepath}') from e
finally:
if video:
video.release()
return frames
def create_label_map(
labels: Sequence[str],
) -> Tuple[Sequence[int], Dict[int, str]]:
"""Creates a label map from a sequence of label strings.
Args:
labels: The sequence of labels to create label map from. Must not contain
invalid values, which means data without labels should be filtered first.
Returns:
The integer labels and the mapping from integers to the original strings.
"""
inverse_label_map: Dict[str, int] = dict()
num_labels = 0
for label in labels:
if label not in inverse_label_map:
num_labels += 1
inverse_label_map[label] = num_labels
int_labels = [inverse_label_map[label] for label in labels]
label_map = {value: key for key, value in inverse_label_map.items()}
return int_labels, label_map
def write_label_map(output_file: str, label_map: Dict[int, str]) -> None:
"""Writes a label map to the output file, which can be a GCS uri."""
with tf.io.gfile.GFile(output_file, 'w') as f:
yaml.dump({'label_map': label_map}, f)
def detectron_json_to_image_rows(input_json: str) -> list[Dict[str, Any]]:
"""Converts a Detectron JSON file to a list of image rows.
Args:
input_json: A path to a Detectron JSON or JSONL file.
Returns:
A list of dictionaries, where each dictionary contains Detectron format
entry.
Raises:
ValueError: If the input JSON is invalid.
"""
image_rows = []
with tf.io.gfile.GFile(input_json, 'r') as f:
for line in f:
json_data = json.loads(line)
if isinstance(json_data, dict):
image_rows.append(json_data)
elif isinstance(json_data, list):
image_rows.extend(json_data)
else:
raise ValueError(
'The input JSON is invalid. Dict or list is expected, but got '
f'{type(json_data)}.'
)
return image_rows
def coco_json_to_image_rows(
input_json: str,
) -> List[Dict[str, Any]]:
"""Converts a COCO JSON file to a list of image rows.
Args:
input_json: A path to a COCO JSON or JSONL file.
Returns:
A list of dictionaries, where each dictionary contains COCO format entry.
Raises:
ValueError: If the input JSON is invalid.
"""
with tf.io.gfile.GFile(input_json, 'r') as f:
coco_json = json.load(f)
if 'annotations' not in coco_json:
raise ValueError('"annotations" is not in the dataset.')
if 'images' not in coco_json:
raise ValueError('"images" is not in the dataset.')
images = coco_json['images']
return images
def partition_by_ml_use(element: Dict[str, Any], num_partitions: int) -> int:
"""Beam partition function to split data by ml_use."""
del num_partitions
try:
partition = ALL_ML_USES.index(element[COLUMN_NAME_ML_USE])
except Exception as e:
raise ValueError(f'Invalid ML use: {element[COLUMN_NAME_ML_USE]}') from e
return partition
def run_beam_pipeline(pipeline: Any) -> None:
"""Runs a beam pipeline. Works in both internal and docker environment."""
options = pipeline_options.PipelineOptions([
'--runner=FlinkRunner',
'--faster_copy',
'--max_parallelism', '8',
])
p = beam.Pipeline(options=options)
pipeline(p)
result = p.run()
result.wait_until_finish()
for counter in result.metrics().query()['counters']:
logging.info('%s counter: %s.', counter.key.metric.name, counter)
logging.info('Completing beam pipeline.')
def beam_convert_tfexamples(
root: beam.Pipeline,
data_list: Sequence[Dict[str, Any]],
convert_fn: Callable[[Dict[str, Any]], tf.train.Example],
output_dir: str,
num_shards: Sequence[int],
) -> None:
"""Constructs beam pipelines to convert train, val, test TF Examples."""
names = [TRAIN_TFRECORD_NAME, VALIDATION_TFRECORD_NAME, TEST_TFRECORD_NAME]
split_data = (
root
| 'Create PCollection' >> beam.Create(data_list)
| 'Data split' >> beam.Partition(partition_by_ml_use, 3)
)
for i in range(3):
ml_use: str = ALL_ML_USES[i]
num_shard = num_shards[i]
output_prefix = os.path.join(output_dir, names[i])
_ = (
split_data[i]
| f'Convert {ml_use} TF Examples'
>> beam.ParDo(WriteToTFRecord(output_prefix, num_shard, convert_fn))
| f'Group {ml_use} TF Record files' >> beam.GroupBy(lambda x: x[0])
| f'Merge {ml_use} TF Record files'
>> beam.Map(merge_tfrecords_func(output_prefix, num_shard))
)
def merge_tfrecords_func(output_prefix: str, num_shard: int) -> ...:
"""Returns a function to merge sharded worker output into expected shards."""
output_prefix = fileutils.force_gcs_fuse_path(output_prefix)
def merge_tfrecords(worker_output: Tuple[int, Sequence[Tuple[int, str]]]):
idx = worker_output[0]
files: Sequence[str] = np.unique([x[1] for x in worker_output[1]])
output_file = f'{output_prefix}-{idx:05d}-of-{num_shard:05d}'
with open(output_file, 'wb') as f:
for file in files:
logging.info('Merging %s.', file)
file = fileutils.force_gcs_fuse_path(file)
with open(file, 'rb') as fin:
while True:
data = fin.read(READ_CHUNK_SIZE)
if not data:
break
f.write(data)
os.remove(file)
return merge_tfrecords
@@ -1,111 +0,0 @@
r"""Converts COCO labels as yamls for model garden playground (IOD).
"""
import os
import urllib.request
from absl import app
from absl import flags
import tensorflow as tf
import yaml
from object_detection.utils import label_map_util
_CONVERT_LABEL_TYPE_COCO_80 = 'coco_80'
_CONVERT_LABEL_TYPE_COCO_91 = 'coco_91'
_CONVERT_LABEL_TYPE = flags.DEFINE_enum(
'convert_label_type',
None,
[
_CONVERT_LABEL_TYPE_COCO_80,
_CONVERT_LABEL_TYPE_COCO_91,
],
'Different types of label type conversion.',
required=True,
)
_TEMPORARY_PATH = flags.DEFINE_string(
'temporary_path',
None,
'The tempory path.',
required=True,
)
_OUTPUT_YAML_FILEPATH = flags.DEFINE_string(
'output_yaml_filepath',
None,
'The output yaml filepath.',
required=True,
)
def convert_coco_label_map_91(
output_yaml_filepath: str,
) -> None:
"""Converts coco label map 91."""
input_proto_filepath = 'https://raw.githubusercontent.com/tensorflow/models/master/research/object_detection/data/mscoco_label_map.pbtxt'
local_input_proto_filepath = os.path.join(
_TEMPORARY_PATH.value, 'mscoco_label_map.pbtxt'
)
with open(local_input_proto_filepath, 'w') as writer:
contents = (
urllib.request.urlopen(input_proto_filepath).read().decode('utf-8')
)
writer.write(contents)
label_map = label_map_util.load_labelmap(local_input_proto_filepath)
label_map_dict = label_map_util.get_label_map_dict(
label_map, use_display_name=True
)
swapped_label_map_dict = {v: k for k, v in label_map_dict.items()}
print(swapped_label_map_dict)
# Saves new label maps as yamls.
with tf.io.gfile.GFile(output_yaml_filepath, 'w') as writer:
writer.write(yaml.dump(swapped_label_map_dict))
def convert_coco_label_map_80(
output_yaml_filepath: str,
) -> None:
"""Converts coco label map 80."""
# Loads label maps from texts.
input_text_filepath = 'https://gist.githubusercontent.com/AruniRC/7b3dadd004da04c80198557db5da4bda/raw/2f10965ace1e36c4a9dca76ead19b744f5eb7e88/ms_coco_classnames.txt'
local_input_text_filepath = os.path.join(
_TEMPORARY_PATH.value, 'ms_coco_classnames.txt'
)
with open(local_input_text_filepath, 'w') as writer:
contents = (
urllib.request.urlopen(input_text_filepath).read().decode('utf-8')
)
writer.write(contents)
with open(local_input_text_filepath, 'r') as file:
content = file.read()
label_map = yaml.safe_load(content)
# Removes background in label maps.
new_label_map = {}
for k, v in label_map.items():
if k == 0:
continue
new_label_map[k - 1] = v
print(new_label_map)
# Saves new label maps as yamls.
with tf.io.gfile.GFile(output_yaml_filepath, 'w') as writer:
writer.write(yaml.dump(new_label_map))
def main(_) -> None:
if _CONVERT_LABEL_TYPE.value == _CONVERT_LABEL_TYPE_COCO_80:
convert_coco_label_map_80(_OUTPUT_YAML_FILEPATH.value)
elif _CONVERT_LABEL_TYPE.value == _CONVERT_LABEL_TYPE_COCO_91:
convert_coco_label_map_91(
_OUTPUT_YAML_FILEPATH.value,
)
else:
print('Not supported convert label type: ', _CONVERT_LABEL_TYPE.value)
if __name__ == '__main__':
app.run(main)
@@ -1,86 +0,0 @@
r"""Converts ImageNet label texts as yamls for model garden playground.
# ImageNet1K will have label maps with background.
"""
import urllib.request
from absl import app
from absl import flags
import tensorflow as tf
import yaml
_INPUT_TEXT_FILEPATH = flags.DEFINE_string(
'input_text_filepath',
None,
'The input text filepath.',
required=True,
)
_ADD_BACKGROUND_LABEL = flags.DEFINE_boolean(
'add_background_label',
None,
'Whether or not add background labels.',
required=True,
)
_ADD_IDS = flags.DEFINE_boolean(
'add_ids',
None,
'Whether or not add ids.',
required=True,
)
_OUTPUT_YAML_FILEPATH = flags.DEFINE_string(
'output_yaml_filepath',
None,
'The output yaml filepath.',
required=True,
)
def convert_imagenet_label_map_from_text_to_yaml(
input_text_filepath: str,
add_background_label: bool,
add_ids: bool,
output_yaml_filepath: str,
) -> None:
"""Converts imagenet label map from text to yamls."""
label_map = {}
# Shifts all keys by 1, and add 0 as 'background'.
if add_background_label:
label_map = yaml.safe_load(
urllib.request.urlopen(input_text_filepath).read()
)
new_label_map = {}
for key, value in label_map.items():
new_label_map[key + 1] = value
new_label_map[0] = 'background'
label_map = new_label_map
# Adds maps from id to each line.
if add_ids:
lines = urllib.request.urlopen(input_text_filepath).readlines()
current_id = 0
for line in lines:
label_map[current_id] = line.decode('ascii').strip()
print(label_map[current_id])
current_id += 1
# Saves new label maps as yamls.
with tf.io.gfile.GFile(output_yaml_filepath, 'w') as writer:
writer.write(yaml.dump(label_map))
def main(_) -> None:
convert_imagenet_label_map_from_text_to_yaml(
_INPUT_TEXT_FILEPATH.value,
_ADD_BACKGROUND_LABEL.value,
_ADD_IDS.value,
_OUTPUT_YAML_FILEPATH.value,
)
if __name__ == '__main__':
app.run(main)
@@ -1,199 +0,0 @@
"""Converts ICN CSV/JSONL files to TFRecord with apache beam."""
import json
from os import path
from typing import Any, Dict, Sequence, Union, cast
from absl import logging
import apache_beam as beam
import pandas as pd
import tensorflow as tf
from data_converter import common_lib
_COLUMN_NAMES = [
common_lib.COLUMN_NAME_ML_USE,
common_lib.COLUMN_NAME_GCS_FILE_PATH,
common_lib.COLUMN_NAME_LABEL,
]
_JSON_GCS_URI_KEY = 'imageGcsUri'
_JSON_CLASS_ANNOTATION_KEY = 'classificationAnnotation'
_JSON_RESOURCE_LABEL_KEY = 'dataItemResourceLabels'
_JSON_CLASS_NAME_KEY = 'displayName'
_JSON_ML_USE_KEY = 'aiplatform.googleapis.com/ml_use'
def build_tf_example(element: Dict[str, Union[str, int]]) -> tf.train.Example:
"""Builds a TF Example from an image uri and label.
Args:
element: A dict with the keys gcs_file_path and label.
Returns:
The created TF Example.
"""
image_uri = cast(str, element[common_lib.COLUMN_NAME_GCS_FILE_PATH])
label = cast(int, element[common_lib.COLUMN_NAME_LABEL])
image_bytes, shape = common_lib.encode_image(image_uri, image_format='jpeg')
features = tf.train.Features(
feature={
'image/encoded': common_lib.convert_to_feature(image_bytes),
'image/format': common_lib.convert_to_string_feature('jpeg'),
'image/height': common_lib.convert_to_feature(shape[0]),
'image/width': common_lib.convert_to_feature(shape[1]),
'image/class/label': common_lib.convert_to_feature(label),
},
)
return tf.train.Example(features=features)
def _run_convert_pipeline(
output_dir: str, df: pd.DataFrame, num_shards: Sequence[int]
) -> None:
"""Starts a Beam pipeline to write DataFrame as TF Records.
Args:
output_dir: TF Records output directory.
df: DataFrame to convert from.
num_shards: Number of shards for train/validation/test TFRecord files.
"""
images_list = df.to_dict('records')
def pipeline(root: beam.Pipeline):
common_lib.beam_convert_tfexamples(
root,
images_list,
build_tf_example,
output_dir,
num_shards,
)
common_lib.run_beam_pipeline(pipeline)
def _convert_df_to_tfrecord(
df: pd.DataFrame,
output_dir: str,
split_ratio: Sequence[float],
num_shard: Sequence[int],
) -> None:
"""Converts a DataFrame into three separate tfrecords for training, validation, and testing into output_dir.
Args:
df: DataFrame to convert.
output_dir: The directory to save TFRecords and label_map.yaml.
split_ratio: List specifying the training, validation, and testing splits
for unassigned TFRecords.
num_shard: Number of shards for train/validation/test TFRecord files.
"""
# Replaces ml_use with common_lib string constants for consistency.
common_lib.format_ml_use_column(df)
common_lib.insert_missing_ml_use(df)
# Ignores invalid rows.
dropped_row_num = common_lib.drop_invalid_rows(df)
if dropped_row_num > 0:
logging.warning('Ignored %d invalid rows.', dropped_row_num)
common_lib.replace_unassigned_ml_use(
df[common_lib.COLUMN_NAME_ML_USE], split_ratio
)
# Converts labels to integers as required by training.
new_labels, label_map = common_lib.create_label_map(
df[common_lib.COLUMN_NAME_LABEL]
)
df[common_lib.COLUMN_NAME_LABEL] = new_labels
label_map_path = path.join(output_dir, common_lib.LABEL_MAP_NAME)
logging.info('Writing label map to %s.', label_map_path)
common_lib.write_label_map(label_map_path, label_map)
_run_convert_pipeline(output_dir, df, num_shard)
def convert_csv_to_tfrecord(
input_csv: str,
output_dir: str,
split_ratio: Sequence[float] = (0.8, 0.1, 0.1),
num_shard: Sequence[int] = (10, 10, 10),
) -> None:
"""Parses input_csv file into three separate tfrecords for training, validation, and testing into output_dir.
The csv format is shown in
https://cloud.google.com/vertex-ai/docs/image-data/classification/prepare-data#csv.
If an ml_use column is not provided, one will be created.
label_map.yaml containing the label map will be placed in output_dir.
Args:
input_csv: Name of the csv file.
output_dir: The directory to save TFRecords and label_map.yaml.
split_ratio: List specifying the training, validation, and testing splits
for unassigned TFRecords.
num_shard: Number of shards for train/validation/test TFRecord files.
"""
with tf.io.gfile.GFile(input_csv, 'r') as f:
df: pd.DataFrame = pd.read_csv(
f, header=None, names=_COLUMN_NAMES, on_bad_lines='warn'
)
_convert_df_to_tfrecord(df, output_dir, split_ratio, num_shard)
def convert_jsonl_to_tfrecord(
input_jsonl: str,
output_dir: str,
split_ratio: Sequence[float] = (0.8, 0.1, 0.1),
num_shard: Sequence[int] = (10, 10, 10),
) -> None:
"""Parses input_jsonl file into three separate tfrecords for training, validation, and testing into output_dir.
The JSONL format is shown in
https://cloud.google.com/vertex-ai/docs/image-data/classification/prepare-data#json-lines.
If an ml_use column is not provided, one will be created.
label_map.yaml containing the label map will be placed in output_dir.
Args:
input_jsonl: Name of the JSONL file.
output_dir: The directory to save TFRecords and label_map.yaml.
split_ratio: List specifying the training, validation, and testing splits
for unassigned TFRecords.
num_shard: Number of shards for train/validation/test TFRecord files.
"""
df_rows = []
with tf.io.gfile.GFile(input_jsonl, 'r') as f:
lines = f.read().rstrip().splitlines()
for i, line in enumerate(lines, 1):
try:
item: Dict[str, Any] = json.loads(line)
gcs_uri = item.get(_JSON_GCS_URI_KEY)
label = item.get(_JSON_CLASS_ANNOTATION_KEY, {}).get(_JSON_CLASS_NAME_KEY)
if not gcs_uri or not label:
logging.warning('Invalid JSON at line %d, skipped.', i)
continue
ml_use = item.get(_JSON_RESOURCE_LABEL_KEY, {}).get(
_JSON_ML_USE_KEY, common_lib.ML_USE_UNASSIGNED
)
except (json.JSONDecodeError, AttributeError):
logging.warning('Invalid JSON at line %d, skipped.', i)
continue
df_rows.append([ml_use, gcs_uri, label])
df = pd.DataFrame(
data=df_rows,
columns=[
common_lib.COLUMN_NAME_ML_USE,
common_lib.COLUMN_NAME_GCS_FILE_PATH,
common_lib.COLUMN_NAME_LABEL,
],
)
_convert_df_to_tfrecord(df, output_dir, split_ratio, num_shard)
@@ -1,430 +0,0 @@
"""Converts IOD dataset files to TFRecord with apache beam."""
import collections
import json
from os import path
from typing import Any, Dict, Sequence
from absl import logging
import apache_beam as beam
import pandas as pd
import tensorflow as tf
from data_converter import common_lib
from util import constants
COLUMN_NAME_LABEL_INT = 'label_int'
_COLUMN_NAME_XMIN = 'X_MIN'
_COLUMN_NAME_YMIN = 'Y_MIN'
_COLUMN_NAME_XMAX = 'X_MAX'
_COLUMN_NAME_YMAX = 'Y_MAX'
COLUMN_NAMES = [
common_lib.COLUMN_NAME_ML_USE,
common_lib.COLUMN_NAME_GCS_FILE_PATH,
common_lib.COLUMN_NAME_LABEL,
_COLUMN_NAME_XMIN,
_COLUMN_NAME_YMIN,
'XMAX_NOT_USED',
'YMIN_NOT_USED',
_COLUMN_NAME_XMAX,
_COLUMN_NAME_YMAX,
'XMIN_NOT_USED',
'YMAX_NOT_USED',
]
_BOUNDING_BOX_COLUMNS = [
_COLUMN_NAME_XMIN,
_COLUMN_NAME_YMIN,
_COLUMN_NAME_XMAX,
_COLUMN_NAME_YMAX,
]
_JSON_BBOX_ANNOTATIONS_KEY = 'boundingBoxAnnotations'
_JSON_DISPLAY_NAME_KEY = 'displayName'
_JSON_X_MIN_KEY = 'xMin'
_JSON_X_MAX_KEY = 'xMax'
_JSON_Y_MIN_KEY = 'yMin'
_JSON_Y_MAX_KEY = 'yMax'
def build_tf_example(image_row: Dict[str, Any]) -> tf.train.Example:
"""Builds a TF Example from an image row.
Args:
image_row: A dictionary containing information about the image, such as its
GCS uri, labels, and bounding box coordinates.
Returns:
A tf.train.Example containing the encoded image and optionally a
bounding box and label.
"""
image_uri = image_row[common_lib.COLUMN_NAME_GCS_FILE_PATH]
image_bytes, shape = common_lib.encode_image(image_uri, image_format='jpeg')
feature = {
'image/encoded': common_lib.convert_to_feature(image_bytes),
'image/format': common_lib.convert_to_string_feature('jpeg'),
'image/height': common_lib.convert_to_feature(shape[0]),
'image/width': common_lib.convert_to_feature(shape[1]),
'image/source_id': common_lib.convert_to_string_feature(image_uri),
'image/object/bbox/xmin': common_lib.convert_to_feature(
image_row[_COLUMN_NAME_XMIN]
),
'image/object/bbox/ymin': common_lib.convert_to_feature(
image_row[_COLUMN_NAME_YMIN]
),
'image/object/bbox/xmax': common_lib.convert_to_feature(
image_row[_COLUMN_NAME_XMAX]
),
'image/object/bbox/ymax': common_lib.convert_to_feature(
image_row[_COLUMN_NAME_YMAX]
),
'image/object/class/text': common_lib.convert_to_list_string_feature(
image_row[common_lib.COLUMN_NAME_LABEL]
),
'image/object/class/label': common_lib.convert_to_feature(
image_row[COLUMN_NAME_LABEL_INT]
),
}
return tf.train.Example(features=tf.train.Features(feature=feature))
def _run_convert_pipeline(
output_dir: str,
image_rows: Sequence[Dict[str, Any]],
num_shards: Sequence[int],
) -> None:
"""Starts a Beam pipeline to write DataFrame as TF Records.
Args:
output_dir: TF Records output directory.
image_rows: Contains all necessary information to create a TF Example.
num_shards: Number of shards for train/validation/test TFRecord files.
"""
def pipeline(root: beam.Pipeline):
common_lib.beam_convert_tfexamples(
root,
image_rows,
build_tf_example,
output_dir,
num_shards,
)
common_lib.run_beam_pipeline(pipeline)
def _convert_df_to_tfrecord(
df: pd.DataFrame,
output_dir: str,
split_ratio: Sequence[float],
num_shard: Sequence[int],
) -> None:
"""Converts a DataFrame into three separate tfrecords for training, validation, and testing into output_dir.
Args:
df: DataFrame to convert.
output_dir: The directory to save TFRecords and label_map.yaml.
split_ratio: List specifying the training, validation, and testing splits
for unassigned TFRecords.
num_shard: Number of shards for train/validation/test TFRecord files.
"""
# Replaces ml_use with common_lib string constants for consistency.
common_lib.format_ml_use_column(df)
common_lib.insert_missing_ml_use(df)
# Specify bounding box columns to be numeric.
df[_BOUNDING_BOX_COLUMNS] = df[_BOUNDING_BOX_COLUMNS].apply(pd.to_numeric)
# Ignores invalid rows.
dropped_row_num = common_lib.drop_invalid_rows(df)
dropped_row_num += drop_rows_without_bbox(df)
if dropped_row_num > 0:
logging.warning('Ignored %d invalid rows.', dropped_row_num)
# Converts labels to integers as required by training.
int_labels, label_map = common_lib.create_label_map(
df[common_lib.COLUMN_NAME_LABEL]
)
df[COLUMN_NAME_LABEL_INT] = int_labels
label_map_path = path.join(output_dir, common_lib.LABEL_MAP_NAME)
logging.info('Writing label map to %s.', label_map_path)
common_lib.write_label_map(label_map_path, label_map)
image_rows = _condense_bounding_boxes(df.to_dict(orient='records'))
ml_uses = [row[common_lib.COLUMN_NAME_ML_USE] for row in image_rows]
common_lib.replace_unassigned_ml_use(ml_uses, split_ratio)
common_lib.merge_seq_into_dicts(
common_lib.COLUMN_NAME_ML_USE, ml_uses, image_rows
)
_run_convert_pipeline(output_dir, image_rows, num_shard)
def _condense_bounding_boxes(
image_rows: Sequence[Dict[str, Any]]
) -> Sequence[Dict[str, Any]]:
"""Gather all the bounding boxes in an image and put them in the same dictionary.
Args:
image_rows: List of dictionaries, each containing information about the
image, such as its GCS uri, labels, and bounding box coordinates.
Returns:
List of dictionaries such that each contains all the bounding boxes for a
given gcs_file_path.
Raises:
RuntimeError: This is raised when the input data contains images that have
annotations in different ml_use classes.
"""
output = {}
for image_row in image_rows:
ml_use = image_row[common_lib.COLUMN_NAME_ML_USE]
gcs_file_path = image_row[common_lib.COLUMN_NAME_GCS_FILE_PATH]
label = image_row[common_lib.COLUMN_NAME_LABEL]
xmin = image_row[_COLUMN_NAME_XMIN]
ymin = image_row[_COLUMN_NAME_YMIN]
xmax = image_row[_COLUMN_NAME_XMAX]
ymax = image_row[_COLUMN_NAME_YMAX]
label_int = image_row[COLUMN_NAME_LABEL_INT]
if gcs_file_path in output:
d = output[gcs_file_path]
if ml_use != common_lib.ML_USE_UNASSIGNED:
if d[common_lib.COLUMN_NAME_ML_USE] == common_lib.ML_USE_UNASSIGNED:
d[common_lib.COLUMN_NAME_ML_USE] = ml_use
elif ml_use != d[common_lib.COLUMN_NAME_ML_USE]:
raise RuntimeError(
f'Image {gcs_file_path} can only be placed in one of'
f' training/validation/test. It is currently in {ml_use} and'
f' {d[common_lib.COLUMN_NAME_ML_USE]}.'
)
d[common_lib.COLUMN_NAME_LABEL].append(label)
d[_COLUMN_NAME_XMIN].append(xmin)
d[_COLUMN_NAME_YMIN].append(ymin)
d[_COLUMN_NAME_XMAX].append(xmax)
d[_COLUMN_NAME_YMAX].append(ymax)
d[COLUMN_NAME_LABEL_INT].append(label_int)
else:
output[gcs_file_path] = {
common_lib.COLUMN_NAME_ML_USE: ml_use,
common_lib.COLUMN_NAME_GCS_FILE_PATH: gcs_file_path,
common_lib.COLUMN_NAME_LABEL: [label],
_COLUMN_NAME_XMIN: [xmin],
_COLUMN_NAME_YMIN: [ymin],
_COLUMN_NAME_XMAX: [xmax],
_COLUMN_NAME_YMAX: [ymax],
COLUMN_NAME_LABEL_INT: [label_int],
}
return list(output.values())
def convert_csv_to_tfrecord(
input_csv: str,
output_dir: str,
split_ratio: Sequence[float] = (0.8, 0.1, 0.1),
num_shard: Sequence[int] = (10, 10, 10),
) -> None:
"""Parses input_csv file into three separate tfrecords for training, validation, and testing into output_dir.
The csv format is shown in
https://cloud.google.com/vertex-ai/docs/image-data/object-detection/prepare-data#csv.
If an ml_use column is not provided, one will be created.
label_map.yaml containing the label map will be placed in output_dir.
Args:
input_csv: Name of the csv file.
output_dir: The directory to save TFRecords and label_map.yaml.
split_ratio: List specifying the train, validation, and test splits for
unassigned TFRecords.
num_shard: Number of shards for train/validation/test TFRecord files.
"""
with tf.io.gfile.GFile(input_csv, 'r') as f:
df: pd.DataFrame = pd.read_csv(
f, header=None, names=COLUMN_NAMES, on_bad_lines='warn'
)
_convert_df_to_tfrecord(df, output_dir, split_ratio, num_shard)
def drop_rows_without_bbox(df: pd.DataFrame) -> int:
"""Drops DataFrame rows without bounding_boxes.
Args:
df: The DataFrame to process in place.
Returns:
The number of rows dropped.
"""
invalid_rows = df.index[~(df[_BOUNDING_BOX_COLUMNS].notnull().all(axis=1))]
dropped_num = len(invalid_rows)
if dropped_num > 0:
invalid_df = df.loc[invalid_rows].to_dict(orient='records')
for entry in invalid_df:
logging.warning('Skipping entry due to missing bounding box: %s.', entry)
df.drop(invalid_rows, inplace=True)
df.reset_index(drop=True, inplace=True)
return dropped_num
def convert_coco_json_categories_to_label_map(
categories: Sequence[Dict[str, Any]]
) -> Dict[int, str]:
return {category['id']: category['name'] for category in categories}
def convert_coco_json_to_tfrecord(
input_coco_json: str,
output_dir: str,
split_ratio: Sequence[float] = (0.8, 0.1, 0.1),
num_shard: Sequence[int] = (10, 10, 10),
) -> None:
"""Parses input_csv file into three separate tfrecords for training, validation, and testing into output_dir.
The COCO json format is shown here: https://cocodataset.org/#format-data.
label_map.yaml containing the label map will be placed in output_dir.
Args:
input_coco_json: Name of coco json file.
output_dir: The directory to save TFRecords and label_map.yaml.
split_ratio: List specifying the train, validation, and test splits for
dataset.
num_shard: Number of shards for train/validation/test TFRecord files.
"""
with tf.io.gfile.GFile(input_coco_json, 'r') as f:
coco_json = json.load(f)
# Writes label map from coco json categories.
label_map = convert_coco_json_categories_to_label_map(
coco_json[constants.COCO_JSON_CATEGORIES]
)
label_map_path = path.join(output_dir, common_lib.LABEL_MAP_NAME)
logging.info('Writes label map to %s.', label_map_path)
common_lib.write_label_map(label_map_path, label_map)
img_to_anns = collections.defaultdict(list)
imgs = {}
if constants.COCO_JSON_ANNOTATIONS in coco_json:
for ann in coco_json[constants.COCO_JSON_ANNOTATIONS]:
img_to_anns[ann[constants.COCO_JSON_ANNOTATION_IMAGE_ID]].append(ann)
if constants.COCO_JSON_IMAGES in coco_json:
for img in coco_json[constants.COCO_JSON_IMAGES]:
imgs[img[constants.COCO_JSON_IMAGE_ID]] = img
df_rows = []
for image_id, annotations in img_to_anns.items():
img = imgs[image_id]
for ann in annotations:
xmin, ymin, xmax, ymax = common_lib.reformat_bbox(
ann[constants.COCO_ANNOTATION_BBOX],
img[constants.COCO_JSON_IMAGE_WIDTH],
img[constants.COCO_JSON_IMAGE_HEIGHT],
)
df_rows.append([
common_lib.ML_USE_UNASSIGNED,
img[constants.COCO_JSON_IMAGE_COCO_URL],
label_map[ann[constants.COCO_JSON_ANNOTATION_CATEGORY_ID]],
xmin,
ymin,
xmax,
ymin,
xmax,
ymax,
xmin,
ymax,
ann[constants.COCO_JSON_ANNOTATION_CATEGORY_ID],
])
df = pd.DataFrame(
data=df_rows,
columns=COLUMN_NAMES + [COLUMN_NAME_LABEL_INT],
)
# Replaces ml_use with common_lib string constants for consistency.
common_lib.format_ml_use_column(df)
common_lib.insert_missing_ml_use(df)
# Species bounding box columns to be numeric.
df[_BOUNDING_BOX_COLUMNS] = df[_BOUNDING_BOX_COLUMNS].apply(pd.to_numeric)
# Ignores invalid rows.
dropped_row_num = common_lib.drop_invalid_rows(df)
dropped_row_num += drop_rows_without_bbox(df)
if dropped_row_num > 0:
logging.warning('Ignored %d invalid rows.', dropped_row_num)
image_rows = _condense_bounding_boxes(df.to_dict(orient='records'))
ml_uses = [row[common_lib.COLUMN_NAME_ML_USE] for row in image_rows]
common_lib.replace_unassigned_ml_use(ml_uses, split_ratio)
common_lib.merge_seq_into_dicts(
common_lib.COLUMN_NAME_ML_USE, ml_uses, image_rows
)
_run_convert_pipeline(output_dir, image_rows, num_shard)
def convert_jsonl_to_tfrecord(
input_jsonl: str,
output_dir: str,
split_ratio: Sequence[float] = (0.8, 0.1, 0.1),
num_shard: Sequence[int] = (10, 10, 10),
) -> None:
"""Parses input_jsonl file into three separate tfrecords for training, validation, and testing into output_dir.
The JSONL format is shown in
https://cloud.google.com/vertex-ai/docs/image-data/object-detection/prepare-data#json-lines.
If an ml_use column is not provided, one will be created.
label_map.yaml containing the label map will be placed in output_dir.
Args:
input_jsonl: Name of the JSONL file.
output_dir: The directory to save TFRecords and label_map.yaml.
split_ratio: List specifying the training, validation, and testing splits
for unassigned TFRecords.
num_shard: Number of shards for train/validation/test TFRecord files.
"""
df_rows = []
with tf.io.gfile.GFile(input_jsonl, 'r') as f:
lines = f.read().rstrip().splitlines()
for i, line in enumerate(lines, start=1):
try:
item: Dict[str, Any] = json.loads(line)
except (json.JSONDecodeError, AttributeError):
logging.warning('Invalid JSON at line %d skipped.', i)
continue
gcs_uri = item.get(common_lib.JSON_GCS_URI_KEY)
if not gcs_uri:
logging.warning(
'Invalid JSON at line %d skipped. Missing gcs_uri_key.', i
)
continue
ml_use = item.get(common_lib.JSON_RESOURCE_LABEL_KEY, {}).get(
common_lib.JSON_ML_USE_KEY, common_lib.ML_USE_UNASSIGNED
)
for bbox in item.get(_JSON_BBOX_ANNOTATIONS_KEY, []):
label = bbox.get(_JSON_DISPLAY_NAME_KEY)
xmin = bbox.get(_JSON_X_MIN_KEY)
ymin = bbox.get(_JSON_Y_MIN_KEY)
xmax = bbox.get(_JSON_X_MAX_KEY)
ymax = bbox.get(_JSON_Y_MAX_KEY)
df_rows.append([ml_use, gcs_uri, label, xmin, ymin, xmax, ymax])
df = pd.DataFrame(
data=df_rows,
columns=[
common_lib.COLUMN_NAME_ML_USE,
common_lib.COLUMN_NAME_GCS_FILE_PATH,
common_lib.COLUMN_NAME_LABEL,
_COLUMN_NAME_XMIN,
_COLUMN_NAME_YMIN,
_COLUMN_NAME_XMAX,
_COLUMN_NAME_YMAX,
],
)
_convert_df_to_tfrecord(df, output_dir, split_ratio, num_shard)
@@ -1,328 +0,0 @@
"""Python script to convert different file formats for ISG to tfrecords."""
import hashlib
import os
from typing import Any, Dict, Iterator, List, Optional, Tuple, Union
from absl import logging
import apache_beam as beam
from apache_beam.io import tfrecordio
import cv2
import numpy as np
from pycocotools import coco
import tensorflow as tf
import yaml
from data_converter import common_lib
from util import constants
from util import fileutils
_IMAGE_FORMAT = 'PNG'
def build_tf_example(
image_info: dict[str, Union[str, int]],
segmentation_image: List[List[int]],
output_shape: Optional[Tuple[int, int]] = None,
) -> tf.train.Example:
"""Encodes an image and its segmentation mask into a tf.train.Example.
Args:
image_info: A dictionary containing information about the image, such as its
file name, height, and width.
segmentation_image: 2D image in list of lists having category ids.
output_shape: The desired output shape of the image. If None, the original
image shape will be used.
Returns:
A tf.train.Example containing the encoded image and segmentation mask.
Raises:
IOError: If image cannot be found in the path.
"""
file_name = image_info[constants.COCO_JSON_FILE_NAME]
height = int(image_info[constants.COCO_JSON_IMAGE_HEIGHT])
width = int(image_info[constants.COCO_JSON_IMAGE_WIDTH])
segmentation_image = np.expand_dims(
np.asarray(segmentation_image, dtype=np.int32), axis=-1
)
_, encoded_seg = cv2.imencode(f'.{_IMAGE_FORMAT.lower()}', segmentation_image)
encoded_seg = encoded_seg.tobytes()
encoded_img, _ = common_lib.encode_image(
image_info[constants.COCO_JSON_IMAGE_COCO_URL],
output_shape=output_shape,
image_format=_IMAGE_FORMAT.lower(),
)
key = hashlib.sha256(encoded_img).hexdigest()
return tf.train.Example(
features=tf.train.Features(
feature={
'image/height': common_lib.convert_to_feature(height),
'image/width': common_lib.convert_to_feature(width),
'image/filename': common_lib.convert_to_string_feature(file_name),
'image/sha256': common_lib.convert_to_string_feature(key),
'image/encoded': common_lib.convert_to_feature(encoded_img),
'image/format': common_lib.convert_to_string_feature(
_IMAGE_FORMAT
),
'image/segmentation/class/encoded': common_lib.convert_to_feature(
encoded_seg
),
'image/segmentation/class/format': (
common_lib.convert_to_string_feature(_IMAGE_FORMAT)
),
'image/segmentation/class/height': common_lib.convert_to_feature(
height
),
'image/segmentation/class/width': common_lib.convert_to_feature(
width
),
}
)
)
class AcquireTFExampleDoFn(beam.DoFn):
"""Beam DoFn to build TF Examples from a single row of image_info data."""
# These tags will be used to tag the outputs of this DoFn.
output_tag_train = constants.ML_USE_TRAINING
output_tag_validation = constants.ML_USE_VALIDATION
output_tag_test = constants.ML_USE_TEST
valid_ml_use_set = set(
[output_tag_train, output_tag_validation, output_tag_test]
)
def __init__(self, output_shape: Optional[Tuple[int, int]] = None):
self.acquired_examples_counter = beam.metrics.Metrics.counter(
self.__class__.__name__, 'Success'
)
self.failure_counter = beam.metrics.Metrics.counter(
self.__class__.__name__, 'Failure'
)
self.output_shape = output_shape
def process(
self,
row: Tuple[str, Dict[str, Union[str, int]], List[List[int]]],
) -> Iterator[tf.train.Example]:
ml_use, image_info, annotation_info = row
if ml_use not in self.valid_ml_use_set:
logging.warning('ml_use invalid: %s', ml_use)
self.failure_counter.inc()
return
try:
tf_example = build_tf_example(
image_info, annotation_info, self.output_shape
)
except IOError as e:
logging.warning('Failed to build TF Example: %s', e)
self.failure_counter.inc()
else:
self.acquired_examples_counter.inc()
yield beam.pvalue.TaggedOutput(ml_use, tf_example)
def _define_data_conversion_pipeline(
root: beam.Pipeline,
ml_use_rows: List[str],
image_rows: List[Dict[str, Union[str, int]]],
segmentation_rows: List[List[List[int]]],
output_dir: str,
output_shape: Optional[Tuple[int, int]],
num_shard_list: List[int],
):
"""Define a data conversion pipeline.
Args:
root: A Beam pipeline.
ml_use_rows: List containing the ml_use.
image_rows: List of dictionaries containing information about the image,
such as its file name, height, and width.
segmentation_rows: List of 2D images of integers representing segmentation
masks.
output_dir: Directory where the output TFRecords will be written.
output_shape: Desired output shape of the image. If None, the original image
shape will be used.
num_shard_list: Number of shards to write to each output TFRecord.
Returns:
A Beam pipeline.
"""
train, validation, test = (
root
| 'Load ml use and image rows to beam'
>> beam.Create(zip(ml_use_rows, image_rows, segmentation_rows))
| 'Build TF Examples'
>> beam.ParDo(AcquireTFExampleDoFn(output_shape)).with_outputs(
AcquireTFExampleDoFn.output_tag_train,
AcquireTFExampleDoFn.output_tag_validation,
AcquireTFExampleDoFn.output_tag_test,
)
)
# Save each split to TFRecord.
_ = train | 'Save train split to TFRecord' >> tfrecordio.WriteToTFRecord(
os.path.join(output_dir, common_lib.TRAIN_TFRECORD_NAME),
coder=beam.coders.ProtoCoder(tf.train.Example),
num_shards=num_shard_list[0],
)
_ = (
validation
| 'Save validation split to TFRecord'
>> tfrecordio.WriteToTFRecord(
os.path.join(output_dir, common_lib.VALIDATION_TFRECORD_NAME),
coder=beam.coders.ProtoCoder(tf.train.Example),
num_shards=num_shard_list[1],
)
)
_ = test | 'Save test split to TFRecord' >> tfrecordio.WriteToTFRecord(
os.path.join(output_dir, common_lib.TEST_TFRECORD_NAME),
coder=beam.coders.ProtoCoder(tf.train.Example),
num_shards=num_shard_list[2],
)
def _image_info_to_segmentation_image(
img: Dict[str, Any],
coco_dataset: coco.COCO,
label_id_by_category_id: Dict[int, int],
) -> List[List[int]]:
"""Convert image information to a segmentation image.
Args:
img: The image information.
coco_dataset: The COCO dataset.
label_id_by_category_id: The mapping from label id used for training to
category_id defined in dataset.
Returns:
The segmentation image.
Raises:
ValueError: If the mask size does not match the image or if a pixel has
multiple labels.
"""
seg_img = np.zeros(
shape=(
img[constants.COCO_JSON_IMAGE_HEIGHT],
img[constants.COCO_JSON_IMAGE_WIDTH],
),
dtype=np.int32,
)
for ann in coco_dataset.imgToAnns[img[constants.COCO_JSON_IMAGE_ID]]:
new_category_id = ann[constants.COCO_JSON_ANNOTATION_CATEGORY_ID]
binary_mask = coco_dataset.annToMask(ann)
if seg_img.shape != binary_mask.shape:
raise ValueError(
'Binary mask does not have the same shape as image. image_id:'
f' {img["id"]}'
)
boolean_mask = binary_mask == 1
if (seg_img[boolean_mask] != 0).any():
raise ValueError(
'Error: Some pixels have more than one label in image_id:'
f' {img["id"]}.'
)
seg_img[boolean_mask] = label_id_by_category_id[new_category_id]
return seg_img.tolist()
def get_input_rows(
coco_dataset: coco.COCO,
split_ratio: List[float],
label_id_by_category_id: Dict[int, int],
) -> Tuple[List[str], List[Dict[str, Union[str, int]]], List[List[List[int]]]]:
"""Get input rows for training and validation.
Args:
coco_dataset: The COCO dataset.
split_ratio: The split ratio for training and validation.
label_id_by_category_id: The mapping from label id used for training to
category_id defined in dataset.
Returns:
- A list of ml_use strings.
- A list of image informations.
- A list of segmentation images for the corresponding images.
"""
image_rows = coco_dataset.dataset[constants.COCO_JSON_IMAGES]
segmentation_rows = [
_image_info_to_segmentation_image(
img, coco_dataset, label_id_by_category_id
)
for img in image_rows
]
ml_use_rows = common_lib.create_ml_use_array_with_split(
len(image_rows), split_ratio
)
return ml_use_rows, image_rows, segmentation_rows
def beam_build_tfrecord_from_coco_json(
input_json: str,
output_dir: str,
split_ratio: List[float],
num_shard_list: List[int],
output_shape: Optional[Tuple[int, int]] = None,
) -> None:
"""Builds TFRecord files from COCO dataset.
The output file names are `_TRAIN_TFRECORD_NAME`, `_VALIDATION_TFRECORD_NAME`,
and `_TEST_TFRECORD_NAME`.
Args:
input_json: Path to a COCO JSON or JSONL file.
output_dir: Directory to output the TFRecord files.
split_ratio: List of how to split entries to train, validation, and test
TFRecords.
num_shard_list: List of the number of shards for each TFRecord file.
output_shape: The desired output shape of the image. If None, the original
image shape will be used.
"""
# `coco` cannot access gcs uri. Use gcsfuse, it is faster.
input_json = fileutils.force_gcs_fuse_path(input_json)
coco_dataset = coco.COCO(input_json)
label_map = {}
label_id_by_category_id = {}
for idx, category in enumerate(
coco_dataset.dataset[constants.COCO_JSON_CATEGORIES], start=1
):
label_map[idx] = category[constants.COCO_JSON_CATEGORY_NAME]
label_id_by_category_id[category[constants.COCO_JSON_CATEGORY_ID]] = idx
label_map_path = os.path.join(output_dir, common_lib.LABEL_MAP_NAME)
logging.info('Writing label map to %s.', label_map_path)
common_lib.write_label_map(label_map_path, label_map)
with tf.io.gfile.GFile(
os.path.join(output_dir, 'label_id_by_category_id.yaml'), 'w'
) as f:
yaml.dump(label_id_by_category_id, f)
ml_use_rows, image_rows, segmentation_rows = get_input_rows(
coco_dataset, split_ratio, label_id_by_category_id
)
def pipeline(root):
_define_data_conversion_pipeline(
root,
ml_use_rows,
image_rows,
segmentation_rows,
output_dir,
output_shape,
num_shard_list,
)
logging.info('Beginning beam pipeline to acquire tfrecords.')
common_lib.run_beam_pipeline(pipeline)
@@ -1,166 +0,0 @@
r"""Python script to convert user input data to training docker format.
Note: the training format is designed to be tfrecord as in the design doc.
If there are training efficiency issues for pytorch algorithms, we will also
support pytorch formats as well.
"""
from absl import app
from absl import flags
from absl import logging
from data_converter import common_lib
from data_converter import data_converter_icn_lib
from data_converter import data_converter_iod_lib
from data_converter import data_converter_isg_lib
from data_converter import data_converter_vcn_lib
from util import constants
_INPUT_FILE_PATH = flags.DEFINE_string(
'input_file_path',
None,
'Input file path.',
required=True,
)
_INPUT_FILE_TYPE = flags.DEFINE_enum(
'input_file_type',
None,
[
constants.INPUT_FILE_TYPE_CSV,
constants.INPUT_FILE_TYPE_JSONL,
constants.INPUT_FILE_TYPE_COCO_JSON,
],
'Input file type.',
required=True,
)
_OBJECTIVE = flags.DEFINE_enum(
'objective',
None,
[
constants.OBJECTIVE_IMAGE_CLASSIFICATION,
constants.OBJECTIVE_IMAGE_OBJECT_DETECTION,
constants.OBJECTIVE_IMAGE_SEGMENTATION,
constants.OBJECTIVE_VIDEO_CLASSIFICATION,
],
'The objective of this training job.',
required=True,
)
_OUTPUT_DIR = flags.DEFINE_string(
'output_dir',
None,
'The output directory for converted data and label map files.',
required=True,
)
_SPLIT_RATIO = flags.DEFINE_list(
'split_ratio',
'0.8,0.1,0.1',
'Proportion of data to split into train/validation/test.',
)
_NUM_SHARD = flags.DEFINE_list(
'num_shard', '10,10,10', 'The number of shards for train/validation/test.'
)
_OUTPUT_FPS = flags.DEFINE_integer(
'output_fps', 5, 'For videos only. The output frames rate per second.'
)
def main(_) -> None:
logging.info(
(
'Start data converter on: %s (type: %s) with split: %s for %s'
' (shard=%s), and output to %s.'
),
_INPUT_FILE_PATH.value,
_INPUT_FILE_TYPE.value,
_SPLIT_RATIO.value,
_OBJECTIVE.value,
_NUM_SHARD.value,
_OUTPUT_DIR.value,
)
split_ratio = list(map(float, _SPLIT_RATIO.value))
num_shard = list(map(int, _NUM_SHARD.value))
common_lib.check_split_ratio(split_ratio)
common_lib.check_num_shard(num_shard)
if (
_OBJECTIVE.value == constants.OBJECTIVE_IMAGE_OBJECT_DETECTION
and _INPUT_FILE_TYPE.value == constants.INPUT_FILE_TYPE_CSV
):
data_converter_iod_lib.convert_csv_to_tfrecord(
_INPUT_FILE_PATH.value,
_OUTPUT_DIR.value,
split_ratio,
num_shard,
)
elif (
_OBJECTIVE.value == constants.OBJECTIVE_IMAGE_OBJECT_DETECTION
and _INPUT_FILE_TYPE.value == constants.INPUT_FILE_TYPE_JSONL
):
data_converter_iod_lib.convert_jsonl_to_tfrecord(
_INPUT_FILE_PATH.value, _OUTPUT_DIR.value, split_ratio, num_shard
)
elif (
_OBJECTIVE.value == constants.OBJECTIVE_IMAGE_OBJECT_DETECTION
and _INPUT_FILE_TYPE.value == constants.INPUT_FILE_TYPE_COCO_JSON
):
data_converter_iod_lib.convert_coco_json_to_tfrecord(
_INPUT_FILE_PATH.value,
_OUTPUT_DIR.value,
split_ratio,
num_shard,
)
elif _OBJECTIVE.value == constants.OBJECTIVE_IMAGE_SEGMENTATION:
data_converter_isg_lib.beam_build_tfrecord_from_coco_json(
_INPUT_FILE_PATH.value,
_OUTPUT_DIR.value,
split_ratio,
num_shard,
)
elif (
_OBJECTIVE.value == constants.OBJECTIVE_IMAGE_CLASSIFICATION
and _INPUT_FILE_TYPE.value == constants.INPUT_FILE_TYPE_CSV
):
data_converter_icn_lib.convert_csv_to_tfrecord(
_INPUT_FILE_PATH.value,
_OUTPUT_DIR.value,
split_ratio,
num_shard,
)
elif (
_OBJECTIVE.value == constants.OBJECTIVE_IMAGE_CLASSIFICATION
and _INPUT_FILE_TYPE.value == constants.INPUT_FILE_TYPE_JSONL
):
data_converter_icn_lib.convert_jsonl_to_tfrecord(
_INPUT_FILE_PATH.value, _OUTPUT_DIR.value, split_ratio, num_shard
)
elif (
_OBJECTIVE.value == constants.OBJECTIVE_VIDEO_CLASSIFICATION
and _INPUT_FILE_TYPE.value == constants.INPUT_FILE_TYPE_CSV
):
data_converter_vcn_lib.convert_csv_to_tfrecord(
_INPUT_FILE_PATH.value,
_OUTPUT_DIR.value,
_OUTPUT_FPS.value,
split_ratio,
num_shard,
)
elif (
_OBJECTIVE.value == constants.OBJECTIVE_VIDEO_CLASSIFICATION
and _INPUT_FILE_TYPE.value == constants.INPUT_FILE_TYPE_JSONL
):
data_converter_vcn_lib.convert_jsonl_to_tfrecord(
_INPUT_FILE_PATH.value,
_OUTPUT_DIR.value,
_OUTPUT_FPS.value,
split_ratio,
num_shard,
)
else:
raise NotImplementedError(
f'File format {_INPUT_FILE_TYPE.value} is not supported for'
f' {_OBJECTIVE.value}.'
)
if __name__ == '__main__':
app.run(main)
@@ -1,289 +0,0 @@
"""Converts VCN CSV/JSONL files to TFRecord with apache beam."""
import json
from os import path
from typing import Any, Dict, Iterator, Sequence, Union, cast
from absl import logging
import apache_beam as beam
from apache_beam.io import tfrecordio
import numpy as np
import pandas as pd
import tensorflow as tf
from data_converter import common_lib
from util import constants
_COLUMN_NAMES = [
common_lib.COLUMN_NAME_ML_USE,
common_lib.COLUMN_NAME_GCS_FILE_PATH,
common_lib.COLUMN_NAME_LABEL,
common_lib.COLUMN_NAME_START_SEC,
common_lib.COLUMN_NAME_END_SEC,
]
_JSON_GCS_URI_KEY = 'videoGcsUri'
_JSON_CLASS_ANNOTATION_KEY = 'timeSegmentAnnotations'
_JSON_CLASS_NAME_KEY = 'displayName'
_JSON_START_TIME_KEY = 'startTime'
_JSON_END_TIME_KEY = 'endTime'
_JSON_RESOURCE_LABEL_KEY = 'dataItemResourceLabels'
_JSON_ML_USE_KEY = 'aiplatform.googleapis.com/ml_use'
def build_tf_example(
video_uri: str,
label: int,
start_sec: float,
end_sec: float,
output_fps: int,
) -> tf.train.SequenceExample:
"""Builds a TF Example from a video clip.
Args:
video_uri: GCS URI to the video file.
label: Class label as an integer.
start_sec: Start timestamp of the video clip in seconds.
end_sec: End timestamp of the video clip in seconds.
output_fps: The output frame rate per second.
Returns:
The created TF Example.
"""
frame_bytes = common_lib.encode_video(
video_uri, start_sec, end_sec, output_fps, image_format='jpg'
)
seq_example = tf.train.SequenceExample()
seq_example.context.feature['clip/label/index'].int64_list.value[:] = [label]
for frame in frame_bytes:
seq_example.feature_lists.feature_list.get_or_create(
'image/encoded'
).feature.add().bytes_list.value[:] = [frame]
return seq_example
class AcquireTFExampleDoFn(beam.DoFn):
"""Beam DoFn to build TF Examples from a DataFrame row dict for VCN."""
def __init__(self, output_fps: int):
self._success_counter = beam.metrics.Metrics.counter(
self.__class__.__name__, 'Success'
)
self._failure_counter = beam.metrics.Metrics.counter(
self.__class__.__name__, 'Failure'
)
self._output_fps = output_fps
def process(
self, element: Dict[str, Union[float, int, str]]
) -> Iterator[tf.train.SequenceExample]:
ml_use: str = cast(str, element[common_lib.COLUMN_NAME_ML_USE])
video_uri: str = cast(str, element[common_lib.COLUMN_NAME_GCS_FILE_PATH])
try:
label: int = int(element[common_lib.COLUMN_NAME_LABEL])
start_sec: float = float(element[common_lib.COLUMN_NAME_START_SEC])
end_sec: float = float(element[common_lib.COLUMN_NAME_END_SEC])
tf_example = build_tf_example(
video_uri,
label,
start_sec,
end_sec,
self._output_fps,
)
self._success_counter.inc()
yield beam.pvalue.TaggedOutput(ml_use, tf_example)
except (ValueError, IOError) as err:
logging.error('Failed to process %s', video_uri)
logging.exception(err)
self._failure_counter.inc()
def _run_convert_pipeline(
output_dir: str,
df: pd.DataFrame,
num_shards: Sequence[int],
output_fps: int,
) -> None:
"""Starts a Beam pipeline to write DataFrame as TF Records.
Args:
output_dir: TF Records output directory.
df: DataFrame to convert from.
num_shards: Number of shards for train/validation/test TFRecord files.
output_fps: The output frame rate per second.
"""
clip_list = df.to_dict('records')
def pipeline(root):
train, val, test = (
root
| 'Create PCollection' >> beam.Create(clip_list)
| 'Convert to TF Example'
>> beam.ParDo(AcquireTFExampleDoFn(output_fps)).with_outputs(
constants.ML_USE_TRAINING,
constants.ML_USE_VALIDATION,
constants.ML_USE_TEST,
)
)
_ = train | 'Save train TF Record' >> tfrecordio.WriteToTFRecord(
path.join(output_dir, common_lib.TRAIN_TFRECORD_NAME),
coder=beam.coders.ProtoCoder(tf.train.Example),
num_shards=num_shards[0],
)
_ = val | 'Save val TF Record' >> tfrecordio.WriteToTFRecord(
path.join(output_dir, common_lib.VALIDATION_TFRECORD_NAME),
coder=beam.coders.ProtoCoder(tf.train.Example),
num_shards=num_shards[1],
)
_ = test | 'Save test TF Record' >> tfrecordio.WriteToTFRecord(
path.join(output_dir, common_lib.TEST_TFRECORD_NAME),
coder=beam.coders.ProtoCoder(tf.train.Example),
num_shards=num_shards[2],
)
common_lib.run_beam_pipeline(pipeline)
def _convert_df_to_tfrecord(
df: pd.DataFrame,
output_dir: str,
split_ratio: Sequence[float],
num_shard: Sequence[int],
output_fps: int,
) -> None:
"""Converts a DataFrame into three separate tfrecords for training, validation, and testing into output_dir.
Args:
df: DataFrame to convert.
output_dir: The directory to save TFRecords and label_map.yaml.
split_ratio: List specifying the training, validation, and testing splits
for unassigned TFRecords.
num_shard: Number of shards for train/validation/test TFRecord files.
output_fps: The output frame rate per second.
"""
# Replaces ml_use with common_lib string constants for consistency.
common_lib.format_ml_use_column(df)
common_lib.insert_missing_ml_use(df)
# Ignores invalid rows.
dropped_row_num = common_lib.drop_invalid_rows(df)
if dropped_row_num > 0:
logging.warning('Ignored %d invalid rows.', dropped_row_num)
common_lib.replace_unassigned_ml_use(
df[common_lib.COLUMN_NAME_ML_USE], split_ratio
)
# Converts labels to integers as required by training.
new_labels, label_map = common_lib.create_label_map(
df[common_lib.COLUMN_NAME_LABEL]
)
df[common_lib.COLUMN_NAME_LABEL] = new_labels
label_map_path = path.join(output_dir, common_lib.LABEL_MAP_NAME)
logging.info('Writing label map to %s.', label_map_path)
common_lib.write_label_map(label_map_path, label_map)
# Missing start / end times are treated as 0, inf, respectively.
df[common_lib.COLUMN_NAME_START_SEC].fillna(0, inplace=True)
df[common_lib.COLUMN_NAME_END_SEC].fillna(np.inf, inplace=True)
_run_convert_pipeline(output_dir, df, num_shard, output_fps)
def convert_csv_to_tfrecord(
input_csv: str,
output_dir: str,
output_fps: int,
split_ratio: Sequence[float] = (0.8, 0.1, 0.1),
num_shard: Sequence[int] = (10, 10, 10),
) -> None:
"""Parses input_csv file into three separate tfrecords for training, validation, and testing into output_dir.
The csv format is shown in
https://cloud.google.com/vertex-ai/docs/video-data/classification/prepare-data#csv
If an ml_use column is not provided, one will be created.
label_map.yaml containing the label map will be placed in output_dir.
Args:
input_csv: Name of the csv file.
output_dir: The directory to save TFRecords and label_map.yaml.
output_fps: The output frame rate per second.
split_ratio: List specifying the training, validation, and testing splits
for unassigned TFRecords.
num_shard: Number of shards for train/validation/test TFRecord files.
"""
with tf.io.gfile.GFile(input_csv, 'r') as f:
df: pd.DataFrame = pd.read_csv(
f, header=None, names=_COLUMN_NAMES, on_bad_lines='warn'
)
_convert_df_to_tfrecord(df, output_dir, split_ratio, num_shard, output_fps)
def convert_jsonl_to_tfrecord(
input_jsonl: str,
output_dir: str,
output_fps: int,
split_ratio: Sequence[float] = (0.8, 0.1, 0.1),
num_shard: Sequence[int] = (10, 10, 10),
) -> None:
"""Parses input_jsonl file into three separate tfrecords for training, validation, and testing into output_dir.
The JSONL format is shown in
https://cloud.google.com/vertex-ai/docs/video-data/classification/prepare-data#jsonl.
If an ml_use column is not provided, one will be created.
label_map.yaml containing the label map will be placed in output_dir.
Args:
input_jsonl: Name of the JSONL file.
output_dir: The directory to save TFRecords and label_map.yaml.
output_fps: The output frame rate per second.
split_ratio: List specifying the training, validation, and testing splits
for unassigned TFRecords.
num_shard: Number of shards for train/validation/test TFRecord files.
"""
df_rows = []
with tf.io.gfile.GFile(input_jsonl, 'r') as f:
lines = f.read().rstrip().splitlines()
for i, line in enumerate(lines, 1):
try:
item: Dict[str, Any] = json.loads(line)
gcs_uri = item.get(_JSON_GCS_URI_KEY)
if not gcs_uri:
logging.warning('Invalid JSON at line %d, skipped.', i)
continue
annotations = item.get(_JSON_CLASS_ANNOTATION_KEY, [])
ml_use = item.get(_JSON_RESOURCE_LABEL_KEY, {}).get(
_JSON_ML_USE_KEY, common_lib.ML_USE_UNASSIGNED
)
for j, annotation in enumerate(annotations):
label = annotation.get(_JSON_CLASS_NAME_KEY)
if not label:
logging.warning('Invalid annotation #%d at line %d, skipped.', j, i)
continue
# The example in external documentation uses strings like "1.0s", so we
# need to remove the "s" suffix.
start_time = annotation.get(_JSON_START_TIME_KEY, '0').removesuffix('s')
end_time = annotation.get(_JSON_END_TIME_KEY, 'inf').removesuffix('s')
df_rows.append([ml_use, gcs_uri, label, start_time, end_time])
except (json.JSONDecodeError, AttributeError):
logging.warning('Invalid JSON at line %d, skipped.', i)
continue
df = pd.DataFrame(
data=df_rows,
columns=_COLUMN_NAMES,
)
_convert_df_to_tfrecord(df, output_dir, split_ratio, num_shard, output_fps)
@@ -1,50 +0,0 @@
FROM python:3.9
ENV DEBIAN_FRONTEND=noninteractive
# Install basic libs.
RUN apt-get update && apt-get install -y --no-install-recommends \
cmake \
curl \
wget \
sudo \
gnupg \
python3-opencv \
lsb-release \
ca-certificates \
build-essential \
git \
vim \
screen \
libportaudio2 \
libusb-1.0-0-dev \
openjdk-17-jre
# Add gcsfuse distribution URL as a package source and import its public key.
RUN echo "deb https://packages.cloud.google.com/apt gcsfuse-`lsb_release -c -s` main" | sudo tee /etc/apt/sources.list.d/gcsfuse.list
RUN curl https://packages.cloud.google.com/apt/doc/apt-key.gpg | sudo apt-key add -
# Install gcsfuse.
RUN apt-get update && apt-get install -y --no-install-recommends gcsfuse
# Install google cloud SDK.
RUN wget -q https://dl.google.com/dl/cloudsdk/channels/rapid/downloads/google-cloud-sdk-359.0.0-linux-x86_64.tar.gz
RUN tar xzf google-cloud-sdk-359.0.0-linux-x86_64.tar.gz
RUN ./google-cloud-sdk/install.sh -q
# Make sure gsutil will use the default service account.
RUN echo '[GoogleCompute]\nservice_account = default' > /etc/boto.cfg
# Install required libs.
RUN pip install --upgrade pip
RUN pip install pyyaml==5.4.1
RUN pip install pycocotools==2.0.6
RUN pip install opencv-python-headless==4.7.0.72
RUN pip install numpy==1.24.2
RUN pip install pandas==1.5.3
RUN pip install Pillow==9.4.0
RUN pip install apache-beam[gcp]==2.45.0
RUN pip install object-detection==0.0.3
RUN pip install google-cloud-storage==1.42.3
RUN pip install gcsfs==2021.10.1
RUN pip install pylint==2.17.2
@@ -1,23 +0,0 @@
FROM gcr.io/automl-migration-test/automl-vision-data-converter-base:latest
# Copy license.
RUN wget https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/main/LICENSE
COPY model_oss/data_converter /automl_vision/data_converter
COPY model_oss/util /automl_vision/util
WORKDIR /automl_vision
ENV PYTHONPATH "${PYTHONPATH}:/automl_vision"
# Run pylint to validate code.
COPY .pylintrc /automl_vision/.pylintrc
RUN find . -type f -name "*.py" | xargs pylint --rcfile=./.pylintrc --errors-only
ENTRYPOINT ["python3","data_converter/data_converter_main.py"]
CMD ["--input_file_path=YOUR_INPUT_FILE",\
"--input_file_type=csv",\
"--objective=iod",\
"--output_dir=YOUR_OUTPUT_DIR",\
"--num_shard=10,10,10",\
"--split_ratio=0.8,0.1,0.1"]
@@ -1,74 +0,0 @@
# Dockerfile for Diffuser Serving.
#
# To build:
# docker build -f model_oss/diffusers/dockerfile/serve.Dockerfile . -t ${YOUR_IMAGE_TAG}
#
# To push to gcr:
# docker tag ${YOUR_IMAGE_TAG} gcr.io/${YOUR_PROJECT}/${YOUR_IMAGE_TAG}
# docker push gcr.io/${YOUR_PROJECT}/${YOUR_IMAGE_TAG}
FROM pytorch/torchserve:0.7.0-gpu
USER root
ENV infer_port=7080
ENV mng_port=7081
ENV model_name="diffusers_serving"
ENV PATH="/home/model-server/:${PATH}"
# Install libraries.
ENV PIP_ROOT_USER_ACTION=ignore
RUN python3 -m pip install --upgrade pip
RUN pip install torch==1.13.1
RUN pip install torchvision==0.14.1
RUN pip install transformers==4.27.4
RUN pip install datasets==2.9.0
RUN pip install accelerate==0.17.0
RUN pip install triton==2.0.0.dev20221120
RUN pip install xformers==0.0.16
RUN pip install google-cloud-storage==2.7.0
RUN pip install imageio[ffmpeg]==2.31.0
RUN pip install absl-py==1.4.0
# Copy LICENSE file
RUN apt-get update && apt-get install wget
RUN wget https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/main/LICENSE
# Install diffusers from main branch source code with a pinned commit.
RUN git clone --depth 1 --branch v0.18.1 https://github.com/huggingface/diffusers.git
WORKDIR diffusers
RUN pip install -e .
# Copy model artifacts.
COPY model_oss/diffusers/handler.py /home/model-server/handler.py
COPY model_oss/util/ /home/model-server/util/
ENV PYTHONPATH /home/model-server/
# Create torchserve configuration file.
RUN echo \
"default_response_timeout=1800\n" \
"service_envelope=json\n" \
"inference_address=http://0.0.0.0:${infer_port}\n" \
"management_address=http://0.0.0.0:${mng_port}" >> /home/model-server/config.properties
# Expose ports.
EXPOSE ${infer_port}
EXPOSE ${mng_port}
# Archive model artifacts and dependencies.
# Do not set --model-file and --serialized-file because model and checkpoint
# will be dynamically loaded in handler.py.
RUN torch-model-archiver \
--model-name=${model_name} \
--version=1.0 \
--handler=/home/model-server/handler.py \
--runtime=python3 \
--export-path=/home/model-server/model-store \
--archive-format=default \
--force
# Run Torchserve HTTP serve to respond to prediction requests.
CMD ["torchserve", "--start", \
"--ts-config", "/home/model-server/config.properties", \
"--models", "${model_name}=${model_name}.mar", \
"--model-store", "/home/model-server/model-store"]
@@ -1,47 +0,0 @@
# Dockerfile for Diffuser Training.
#
# To build:
# docker build -f model_oss/diffusers/dockerfile/train.Dockerfile . -t ${YOUR_IMAGE_TAG}
#
# To push to gcr:
# docker tag ${YOUR_IMAGE_TAG} gcr.io/${YOUR_PROJECT}/${YOUR_IMAGE_TAG}
# docker push gcr.io/${YOUR_PROJECT}/${YOUR_IMAGE_TAG}
# Base on pytorch-cuda image.
FROM pytorch/pytorch:1.13.0-cuda11.6-cudnn8-runtime
# Install tools.
RUN apt-get update && apt-get install -y --no-install-recommends \
curl \
wget \
git \
vim
# Copy license.
RUN wget https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/main/LICENSE
# Install libraries.
RUN pip install torchvision==0.14.1
RUN pip install transformers==4.26.1
RUN pip install datasets==2.9.0
RUN pip install accelerate==0.17.0
RUN pip install triton==2.0.0.dev20221120
RUN pip install xformers==0.0.16
RUN pip install Jinja2==3.1.2
RUN pip install ftfy==6.1.1
RUN pip install cloudml-hypertune==0.1.0.dev6
RUN pip install tensorboard==2.12.0
# Install diffusers from main branch source code with a pinned commit.
RUN git clone --depth 1 --branch v0.18.1 https://github.com/huggingface/diffusers.git
WORKDIR diffusers
RUN pip install -e .
# Switch to diffusers examples folder.
WORKDIR examples
# Config accelerate.
COPY model_oss/diffusers/train.sh train.sh
# Generate accelerate config at the beginning of docker run.
ENTRYPOINT ["/bin/bash", "train.sh"]
@@ -1,256 +0,0 @@
"""Custom handler for huggingface/diffusers models."""
# pylint: disable=g-importing-member
# pylint: disable=logging-fstring-interpolation
import base64
import io
import logging
import os
from typing import Any, List, Sequence, Tuple
from diffusers import ControlNetModel
from diffusers import DiffusionPipeline
from diffusers import DPMSolverMultistepScheduler
from diffusers import EulerAncestralDiscreteScheduler
from diffusers import StableDiffusionControlNetPipeline
from diffusers import StableDiffusionImg2ImgPipeline
from diffusers import StableDiffusionInpaintPipeline
from diffusers import StableDiffusionInstructPix2PixPipeline
from diffusers import StableDiffusionPipeline
from diffusers import StableDiffusionUpscalePipeline
from diffusers import TextToVideoZeroPipeline
from diffusers import UniPCMultistepScheduler
import imageio
import numpy as np
from PIL import Image
import torch
from ts.torch_handler.base_handler import BaseHandler
from util import constants
from util import fileutils
from util import image_format_converter
from video_util import video_format_converter
STABLE_DIFFUSION_MODEL = "runwayml/stable-diffusion-v1-5"
# Tasks
TEXT_TO_IMAGE = "text-to-image"
IMAGE_TO_IMAGE = "image-to-image"
IMAGE_INPAINTING = "image-inpainting"
INSTRUCT_PIX2PIX = "instruct-pix2pix"
CONTROLNET = "controlnet"
CONDITIONED_SUPER_RES = "conditioned-super-res"
TEXT_TO_VIDEO_ZERO_SHOT = "text-to-video-zero-shot"
TEXT_TO_VIDEO = "text-to-video"
def frames_to_video_bytes(frames: Sequence[np.ndarray], fps: int) -> bytes:
images = [Image.fromarray(array) for array in frames]
io_obj = io.BytesIO()
imageio.mimsave(io_obj, images, format=".mp4", fps=fps)
return io_obj.getvalue()
class DiffusersHandler(BaseHandler):
"""Custom handler for TIMM models."""
def initialize(self, context: Any):
"""Custom initialize."""
properties = context.system_properties
self.map_location = (
"cuda"
if torch.cuda.is_available() and properties.get("gpu_id") is not None
else "cpu"
)
self.device = torch.device(
self.map_location + ":" + str(properties.get("gpu_id"))
if torch.cuda.is_available() and properties.get("gpu_id") is not None
else self.map_location
)
self.manifest = context.manifest
self.model_id = os.environ["MODEL_ID"]
if self.model_id.startswith(constants.GCS_URI_PREFIX):
gcs_path = self.model_id[len(constants.GCS_URI_PREFIX) :]
local_model_dir = os.path.join(constants.LOCAL_MODEL_DIR, gcs_path)
logging.info(f"Download {self.model_id} to {local_model_dir}")
fileutils.download_gcs_dir_to_local(self.model_id, local_model_dir)
self.model_id = local_model_dir
self.task = os.environ.get("TASK", TEXT_TO_IMAGE)
logging.info(f"Using task:{self.task}, model:{self.model_id}")
if self.task == TEXT_TO_IMAGE:
pipeline = StableDiffusionPipeline.from_pretrained(
self.model_id, torch_dtype=torch.float16
)
pipeline.scheduler = EulerAncestralDiscreteScheduler.from_config(
pipeline.scheduler.config
)
pipeline = pipeline.to(self.map_location)
# Reduce memory footprint.
pipeline.enable_attention_slicing()
elif self.task == IMAGE_TO_IMAGE:
pipeline = StableDiffusionImg2ImgPipeline.from_pretrained(
self.model_id, torch_dtype=torch.float16
)
pipeline.scheduler = EulerAncestralDiscreteScheduler.from_config(
pipeline.scheduler.config
)
pipeline = pipeline.to(self.map_location)
# Reduce memory footprint.
pipeline.enable_attention_slicing()
elif self.task == IMAGE_INPAINTING:
pipeline = StableDiffusionInpaintPipeline.from_pretrained(
self.model_id, torch_dtype=torch.float16
)
pipeline.scheduler = EulerAncestralDiscreteScheduler.from_config(
pipeline.scheduler.config
)
pipeline = pipeline.to(self.map_location)
# Reduce memory footprint.
pipeline.enable_attention_slicing()
elif self.task == INSTRUCT_PIX2PIX:
pipeline = StableDiffusionInstructPix2PixPipeline.from_pretrained(
self.model_id, torch_dtype=torch.float16
)
pipeline.scheduler = EulerAncestralDiscreteScheduler.from_config(
pipeline.scheduler.config
)
pipeline = pipeline.to(self.map_location)
# Reduce memory footprint.
pipeline.enable_attention_slicing()
elif self.task == CONTROLNET:
controlnet = ControlNetModel.from_pretrained(
self.model_id, torch_dtype=torch.float16
)
pipeline = StableDiffusionControlNetPipeline.from_pretrained(
STABLE_DIFFUSION_MODEL,
controlnet=controlnet,
torch_dtype=torch.float16,
)
pipeline.scheduler = UniPCMultistepScheduler.from_config(
pipeline.scheduler.config
)
pipeline.enable_xformers_memory_efficient_attention()
pipeline.enable_model_cpu_offload()
pipeline = pipeline.to(self.map_location)
# Reduce memory footprint.
pipeline.enable_attention_slicing()
elif self.task == CONDITIONED_SUPER_RES:
pipeline = StableDiffusionUpscalePipeline.from_pretrained(
self.model_id, torch_dtype=torch.float16
)
pipeline.scheduler = EulerAncestralDiscreteScheduler.from_config(
pipeline.scheduler.config
)
# This is necessary to 4x upscale >=256x256 input images with V100.
logging.info("Enable xformers memory efficient attention for inference.")
pipeline.enable_xformers_memory_efficient_attention()
pipeline = pipeline.to(self.map_location)
# Reduce memory footprint.
pipeline.enable_attention_slicing()
elif self.task == TEXT_TO_VIDEO_ZERO_SHOT:
pipeline = TextToVideoZeroPipeline.from_pretrained(
STABLE_DIFFUSION_MODEL, torch_dtype=torch.float16
)
# Memory optimization.
pipeline.enable_xformers_memory_efficient_attention()
pipeline.enable_model_cpu_offload()
pipeline = pipeline.to(self.map_location)
elif self.task == TEXT_TO_VIDEO:
pipeline = DiffusionPipeline.from_pretrained(
self.model_id, torch_dtype=torch.float16, variant="fp16"
)
pipeline.enable_model_cpu_offload()
# Memory optimization.
pipeline.enable_vae_slicing()
pipeline.scheduler = DPMSolverMultistepScheduler.from_config(
pipeline.scheduler.config
)
else:
raise ValueError(f"Invalid TASK: {self.task}")
self.pipeline = pipeline
self.initialized = True
logging.info("Handler initialization done.")
def preprocess(self, data: Any) -> Tuple[Any, Any, Any]:
"""Preprocess input data."""
prompts = [item["prompt"] for item in data]
images = None
mask_images = None
if "image" in data[0]:
images = [
image_format_converter.base64_to_image(item["image"]) for item in data
]
if "mask_image" in data[0]:
mask_images = [
image_format_converter.base64_to_image(item["mask_image"])
for item in data
]
return prompts, images, mask_images
def inference(self, data: Any, *args, **kwargs) -> List[Image.Image]:
"""Run the inference."""
prompts, images, mask_images = data
if self.task == TEXT_TO_IMAGE:
predicted_images = self.pipeline(prompt=prompts).images
elif self.task == IMAGE_TO_IMAGE:
predicted_images = self.pipeline(prompt=prompts, image=images).images
elif self.task == IMAGE_INPAINTING:
predicted_images = self.pipeline(
prompt=prompts, image=images, mask_image=mask_images
).images
elif self.task == INSTRUCT_PIX2PIX:
predicted_images = self.pipeline(prompt=prompts, image=images).images
elif self.task == CONTROLNET:
predicted_images = self.pipeline(
prompt=prompts, image=images, num_inference_steps=20
).images
elif self.task == CONDITIONED_SUPER_RES:
predicted_images = self.pipeline(
prompt=prompts, image=images, num_inference_steps=20
).images
elif self.task == TEXT_TO_VIDEO_ZERO_SHOT:
# For each given prompt, generate a short video.
# The pipeline doesn't support multiple prompts in one run yet.
videos = []
for prompt in prompts:
numpy_arrays = self.pipeline(prompt=prompt).images
numpy_arrays = [(i * 255).astype("uint8") for i in numpy_arrays]
videos.append(
frames_to_video_bytes(numpy_arrays, fps=4)
)
return videos
elif self.task == TEXT_TO_VIDEO:
predicted_images = np.asarray(self.pipeline(prompt=prompts).frames)
# For multiple prompts, the model concatenates video frames, i.e. the
# output shape is (num_frames, height, width * len(prompts), channels).
# Therefore we need to split the output into different videos.
predicted_images = np.array_split(predicted_images, len(prompts), axis=2)
videos = [
frames_to_video_bytes(images, fps=8)
for images in predicted_images
]
return videos
else:
raise ValueError(f"Invalid TASK: {self.task}")
return predicted_images
def postprocess(self, data: Any) -> List[str]:
"""Convert the images to base64 string."""
outputs = []
for prediction in data:
if isinstance(prediction, bytes):
# This is the video bytes.
outputs.append(base64.b64encode(prediction).decode("utf-8"))
else:
outputs.append(image_format_converter.image_to_base64(prediction))
return outputs
# pylint: enable=logging-fstring-interpolation
@@ -1,6 +0,0 @@
#!/bin/bash
# Setup accelerate config before running trainer.
python -c "from accelerate.utils import write_basic_config; write_basic_config(mixed_precision='fp16')"
accelerate launch "$@"
@@ -1,118 +0,0 @@
# Dockerfile for basic serving dockers with Keras.
#
# To build:
# docker build -f model_oss/keras/dockerfile/serve.Dockerfile . -t ${YOUR_IMAGE_TAG}
#
# To push to gcr:
# docker tag ${YOUR_IMAGE_TAG} gcr.io/${YOUR_PROJECT}/${YOUR_IMAGE_TAG}
# docker push gcr.io/${YOUR_PROJECT}/${YOUR_IMAGE_TAG}
FROM tensorflow/tensorflow:2.12.0-gpu
ENV DEBIAN_FRONTEND=noninteractive
# This is added to fix docker build error related to Nvidia key update.
RUN rm -f /etc/apt/sources.list.d/cuda.list
RUN curl https://packages.cloud.google.com/apt/doc/apt-key.gpg | apt-key add -
# Install basic libs.
RUN apt-get update && apt-get install -y --no-install-recommends \
cmake \
curl \
wget \
sudo \
gnupg \
libsm6 \
libxext6 \
libxrender-dev \
lsb-release \
ca-certificates \
build-essential \
git \
vim \
screen \
libtcmalloc-minimal4
# Install google cloud SDK.
RUN wget -q https://dl.google.com/dl/cloudsdk/channels/rapid/downloads/google-cloud-sdk-359.0.0-linux-x86_64.tar.gz
RUN tar xzf google-cloud-sdk-359.0.0-linux-x86_64.tar.gz
RUN ./google-cloud-sdk/install.sh -q
# Make sure gsutil will use the default service account.
RUN echo '[GoogleCompute]\nservice_account = default' > /etc/boto.cfg
# Install required libs.
RUN pip install --upgrade pip
RUN pip install cloud-tpu-client==0.10
RUN pip install pyyaml==5.4.1
RUN pip install fsspec==2021.10.1
RUN pip install gcsfs==2021.10.1
RUN pip install tensorflow-text==2.11.0
RUN pip install pyglove==0.1.0
RUN pip install cloudml-hypertune==0.1.0.dev6
RUN pip install pylint==2.17.2
RUN pip install keras-cv==0.4.0
RUN pip install tensorflow-datasets==4.8.3
RUN pip install protobuf==3.20.3
RUN pip install Pillow==9.5.0
RUN pip install flask==2.3.2
RUN pip install waitress==2.1.2
# Installs Reduction Server NCCL plugin.
RUN echo "deb https://packages.cloud.google.com/apt google-fast-socket main" | tee /etc/apt/sources.list.d/google-fast-socket.list \
&& curl -s -L https://packages.cloud.google.com/apt/doc/apt-key.gpg | apt-key add - \
&& apt update && apt install -y google-reduction-server
# Downloading gcloud package
RUN curl https://dl.google.com/dl/cloudsdk/release/google-cloud-sdk.tar.gz > /tmp/google-cloud-sdk.tar.gz
# Installing the package
RUN mkdir -p /usr/local/gcloud \
&& tar -C /usr/local/gcloud -xvf /tmp/google-cloud-sdk.tar.gz \
&& /usr/local/gcloud/google-cloud-sdk/install.sh
RUN wget https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/main/LICENSE
# Adding the package path to local
ENV PATH $PATH:/usr/local/gcloud/google-cloud-sdk/bin
ENV PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION=cpp
# Lower the memory fragmentation, and speed up the training.
# https://github.com/tensorflow/tensorflow/issues/44176#issuecomment-783768033
ENV LD_PRELOAD=/usr/lib/x86_64-linux-gnu/libtcmalloc_minimal.so.4
# Enable userspace DNS cache
ENV GCS_RESOLVE_REFRESH_SECS=60
ENV GCS_REQUEST_CONNECTION_TIMEOUT_SECS=300
ENV GCS_METADATA_REQUEST_TIMEOUT_SECS=300
ENV GCS_READ_REQUEST_TIMEOUT_SECS=300
ENV GCS_WRITE_REQUEST_TIMEOUT_SECS=600
# Each opened GCS file takes GCS_READ_CACHE_BLOCK_SIZE_MB of RAM, reduce the
# value from the default 64MB to 8MB to decrease memory footprint.
ENV GCS_READ_CACHE_BLOCK_SIZE_MB=8
EXPOSE 8501
WORKDIR /usr/local/lib/python3.8/dist-packages/official/vision
COPY model_oss/keras /automl_vision/keras
COPY model_oss/util /automl_vision/util
WORKDIR /automl_vision
ENV PYTHONPATH "${PYTHONPATH}:/automl_vision/util"
ENV MODEL_PATH ""
ENV IMAGE_WIDTH "512"
ENV IMAGE_HEIGHT "512"
COPY model_oss/keras/serve.py ./app.py
# Run pylint to validate code.
COPY .pylintrc /automl_vision/.pylintrc
RUN find . -type f -name "*.py" | xargs pylint --rcfile=./.pylintrc --errors-only
ENTRYPOINT ["flask","run"]
CMD ["--host=0.0.0.0", "--port=8501"]
@@ -1,111 +0,0 @@
# Dockerfile for basic training dockers with Keras.
#
# To build:
# docker build -f model_oss/keras/dockerfile/train.Dockerfile . -t ${YOUR_IMAGE_TAG}
#
# To push to gcr:
# docker tag ${YOUR_IMAGE_TAG} gcr.io/${YOUR_PROJECT}/${YOUR_IMAGE_TAG}
# docker push gcr.io/${YOUR_PROJECT}/${YOUR_IMAGE_TAG}
FROM tensorflow/tensorflow:2.12.0-gpu
ENV DEBIAN_FRONTEND=noninteractive
# This is added to fix docker build error related to Nvidia key update.
RUN rm -f /etc/apt/sources.list.d/cuda.list
RUN curl https://packages.cloud.google.com/apt/doc/apt-key.gpg | apt-key add -
# Install basic libs.
RUN apt-get update && apt-get install -y --no-install-recommends \
cmake \
curl \
wget \
sudo \
gnupg \
libsm6 \
libxext6 \
libxrender-dev \
lsb-release \
ca-certificates \
build-essential \
git \
vim \
screen \
libtcmalloc-minimal4
# Install google cloud SDK.
RUN wget -q https://dl.google.com/dl/cloudsdk/channels/rapid/downloads/google-cloud-sdk-359.0.0-linux-x86_64.tar.gz
RUN tar xzf google-cloud-sdk-359.0.0-linux-x86_64.tar.gz
RUN ./google-cloud-sdk/install.sh -q
# Make sure gsutil will use the default service account.
RUN echo '[GoogleCompute]\nservice_account = default' > /etc/boto.cfg
# Install required libs.
RUN pip install --upgrade pip
RUN pip install cloud-tpu-client==0.10
RUN pip install pyyaml==5.4.1
RUN pip install fsspec==2021.10.1
RUN pip install gcsfs==2021.10.1
RUN pip install tensorflow-text==2.11.0
RUN pip install pyglove==0.1.0
RUN pip install cloudml-hypertune==0.1.0.dev6
RUN pip install pylint==2.17.2
RUN pip install keras-cv==0.4.0
RUN pip install tensorflow-datasets==4.8.3
RUN pip install tensorflow-estimator==2.12.0
RUN pip install tensorflow-gcs-config==2.12.0
RUN pip install tensorflow-hub==0.13.0
RUN pip install tensorflow-io-gcs-filesystem==0.32.0
RUN pip install tensorflow-metadata==1.13.1
RUN pip install tensorflow-probability==0.19.0
RUN pip install tensorboard==2.12.2
RUN pip install tensorboard-data-server==0.7.0
RUN pip install tensorboard-plugin-wit==1.8.1
RUN pip install protobuf==3.20.3
RUN pip install pandas==1.5.3
RUN pip install pandas-datareader==0.10.0
RUN pip install pandas-gbq==0.17.9
RUN pip install pycocotools==2.0.6
# Installs Reduction Server NCCL plugin.
RUN echo "deb https://packages.cloud.google.com/apt google-fast-socket main" | tee /etc/apt/sources.list.d/google-fast-socket.list \
&& curl -s -L https://packages.cloud.google.com/apt/doc/apt-key.gpg | apt-key add - \
&& apt update && apt install -y google-reduction-server
RUN wget https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/main/LICENSE
ENV PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION=cpp
# Lower the memory fragmentation, and speed up the training.
# https://github.com/tensorflow/tensorflow/issues/44176#issuecomment-783768033
ENV LD_PRELOAD=/usr/lib/x86_64-linux-gnu/libtcmalloc_minimal.so.4
# Enable userspace DNS cache
ENV GCS_RESOLVE_REFRESH_SECS=60
ENV GCS_REQUEST_CONNECTION_TIMEOUT_SECS=300
ENV GCS_METADATA_REQUEST_TIMEOUT_SECS=300
ENV GCS_READ_REQUEST_TIMEOUT_SECS=300
ENV GCS_WRITE_REQUEST_TIMEOUT_SECS=600
# Each opened GCS file takes GCS_READ_CACHE_BLOCK_SIZE_MB of RAM, reduce the
# value from the default 64MB to 8MB to decrease memory footprint.
ENV GCS_READ_CACHE_BLOCK_SIZE_MB=8
WORKDIR /usr/local/lib/python3.8/dist-packages/official/vision
COPY model_oss/keras /automl_vision/keras
COPY model_oss/util /automl_vision/util
WORKDIR /automl_vision
# Keras stable diffusion training codes set width and height as RESOLUTION.
ENV RESOLUTION "512"
ENV PYTHONPATH "${PYTHONPATH}:/automl_vision/util"
# Run pylint to validate code.
COPY .pylintrc /automl_vision/.pylintrc
RUN find . -type f -name "*.py" | xargs pylint --rcfile=./.pylintrc --errors-only
ENTRYPOINT ["python3","keras/train.py"]
@@ -1,184 +0,0 @@
r"""Servers Keras Stable Diffusion models.
python serve.py --model_path=<model path in gcs>
curl -d \
'{"prompt":"Hello Kitty"}' \
-H "Content-Type: application/json" \
-X POST http://localhost:8501/predict
"""
import base64
import io
import json
import os
from typing import List, Tuple
from absl import app
# The docker builds could not find flask and waitress.
# pylint: disable=import-error
from flask import Flask
from flask import request
from flask import Response
import keras_cv
from PIL import Image
from waitress import serve
from util import constants
from util import fileutils
flask_app = Flask(__name__)
stable_diffusion_model = None
model_path = os.environ.get('MODEL_PATH', '')
if model_path.startswith(constants.GCS_URI_PREFIX):
print('Downloading models from gcs to local.')
os.makedirs(constants.LOCAL_MODEL_DIR, exist_ok=True)
fileutils.download_gcs_dir_to_local(
os.path.dirname(model_path), constants.LOCAL_MODEL_DIR
)
model_path = os.path.join(
constants.LOCAL_MODEL_DIR, os.path.basename(model_path)
)
image_width = int(os.environ.get('IMAGE_WIDTH', 512))
image_height = int(os.environ.get('IMAGE_HEIGHT', 512))
print('image_width=', image_width, 'image_height=', image_height)
print('Create Keras stable diffusion models.')
stable_diffusion_model = keras_cv.models.StableDiffusion(
img_width=image_width,
img_height=image_height,
jit_compile=True,
)
if model_path:
# We just reload the weights of the fine-tuned diffusion model.
print('Initialize finetuned models from: ', model_path)
stable_diffusion_model.diffusion_model.load_weights(model_path)
def error(message: str) -> str:
"""Returns a JSON representing an error response."""
return json.dumps({
'success': False,
'error': message,
})
def check_key_in_json(content: str, keys: List[str]) -> str:
for key in keys:
if key not in content:
return error('No {} in request {}.'.format(key, content))
return None
def validate_json_key(json_key_string: str) -> Tuple[str, bool]:
try:
json_key = json.loads(json_key_string)
except (ValueError, TypeError):
return (error('Invalid key found in request'), False)
return (json_key, True)
# The health check route is required for docker deployment in google cloud.
@flask_app.route('/ping')
def ping() -> Response:
"""Health checks."""
return Response(status=200)
# The return should be `Response` for docker deployment in google cloud.
@flask_app.route('/predict', methods=['GET', 'POST'])
def predict_model() -> Response:
"""Predictions."""
if request.method == 'POST':
contents = request.get_json(force=True)
print('The input contents are:', contents)
batch_size = 1
num_steps = 25
seed = 1234
if 'parameters' in contents:
parameters = contents['parameters']
if 'batch_size' in parameters:
batch_size = int(parameters['batch_size'])
if 'num_steps' in parameters:
num_steps = int(parameters['num_steps'])
if 'seed' in parameters:
seed = int(parameters['seed'])
print('batch_size=', batch_size, 'num_steps=', num_steps, 'seed=', seed)
if batch_size < 1:
return Response(
response=error('The batch size must be a positive integar.'),
status=200,
mimetype='text/plain',
)
if num_steps < 1:
return Response(
response=error('The num steps must be a positive integar.'),
status=200,
mimetype='text/plain',
)
predictions = []
for content in contents['instances']:
print('Processing:', content)
prompt = content['prompt']
generated_image_array = stable_diffusion_model.text_to_image(
prompt=prompt,
batch_size=batch_size,
num_steps=num_steps,
seed=seed,
)
generated_image_bytes_array = []
for i in range(batch_size):
generated_image = Image.fromarray(generated_image_array[i])
# Converts the image to a base64-encoded string.
buffered_image = io.BytesIO()
generated_image.save(buffered_image, format='JPEG')
generated_image_bytes = base64.b64encode(
buffered_image.getvalue()
).decode('utf-8')
generated_image_bytes_array.append(generated_image_bytes)
prediction = {
'prompt': prompt,
'predicted_image': generated_image_bytes_array,
}
predictions.append(prediction)
return Response(
response=json.dumps({
'success': True,
'predictions': predictions,
}),
status=200,
mimetype='text/plain',
)
else:
return Response(
response=json.dumps({
'success': True,
'isalive': stable_diffusion_model is not None,
}),
status=200,
mimetype='text/plain',
)
def serve_main(unused_argv):
"""The main function to serve Keras models."""
del unused_argv
# This is used when running locally only. When deploying to Google App
# Engine, a webserver process such as Gunicorn will serve the app.
# # Debug deployment.
# flask_app.run(host='0.0.0.0', port=8501, debug=True)
# Prod deployment.
serve(flask_app, host='0.0.0.0', port=8501)
if __name__ == '__main__':
app.run(serve_main)
@@ -1,363 +0,0 @@
"""Train Keras Stable Diffusion.
Most the codes below are from
https://keras.io/examples/generative/finetune_stable_diffusion/.
"""
import os
from absl import app
from absl import flags
from absl import logging
import keras_cv
# pylint: disable=g-importing-member
from keras_cv.models.stable_diffusion.clip_tokenizer import SimpleTokenizer
from keras_cv.models.stable_diffusion.diffusion_model import DiffusionModel
from keras_cv.models.stable_diffusion.image_encoder import ImageEncoder
from keras_cv.models.stable_diffusion.noise_scheduler import NoiseScheduler
from keras_cv.models.stable_diffusion.text_encoder import TextEncoder
import numpy as np
# The docker builds could not find pandas.
# pylint: disable=import-error
import pandas as pd
import tensorflow as tf
from tensorflow import keras
import tensorflow.experimental.numpy as tnp
from util import constants
from util import fileutils
_INPUT_CSV_PATH = flags.DEFINE_string(
'input_csv_path',
None,
'The input csv path.',
required=True,
)
_USE_MP = flags.DEFINE_bool(
'use_mp',
True,
'Enable mixed-precision training if the underlying GPU has tensor cores.',
)
_EPOCHS = flags.DEFINE_integer('epochs', 1, 'The number of epochs.')
_OUTPUT_MODEL_DIR = flags.DEFINE_string(
'output_model_dir',
None,
'The output model dir.',
required=True,
)
# These hyperparameters defaults come from this tutorial by Hugging Face:
# https://huggingface.co/docs/diffusers/training/text2image
_LEARNING_RATE = flags.DEFINE_float(
'learning_rate', 1e-5, 'The learning rate parameter for AdamW optimizer.'
)
_BETA_1 = flags.DEFINE_float(
'beta_1', 0.9, 'The beta_1 parameter for AdamW optimizer.'
)
_BETA_2 = flags.DEFINE_float(
'beta_2', 0.999, 'The beta_2 parameter for AdamW optimizer.'
)
_WEIGHT_DECAY = flags.DEFINE_float(
'weight_decay', 1e-2, 'The weight decay parameter for AdamW optimizer.'
)
_EPSILON = flags.DEFINE_float(
'epsilon', 1e-08, 'The epsilon parameter for AdamW optimizer.'
)
RESOLUTION = int(os.environ.get('RESOLUTION', 512))
# The padding token and maximum prompt length are specific to the text encoder.
# If you're using a different text encoder be sure to change them accordingly.
PADDING_TOKEN = 49407
MAX_PROMPT_LENGTH = 77
AUTO = tf.data.AUTOTUNE
POS_IDS = tf.convert_to_tensor([list(range(MAX_PROMPT_LENGTH))], dtype=tf.int32)
augmenter = keras.Sequential(
layers=[
keras_cv.layers.CenterCrop(RESOLUTION, RESOLUTION),
keras_cv.layers.RandomFlip(),
tf.keras.layers.Rescaling(scale=1.0 / 127.5, offset=-1),
]
)
text_encoder = TextEncoder(MAX_PROMPT_LENGTH)
def process_image(image_path, tokenized_text):
image = tf.io.read_file(image_path)
image = tf.io.decode_png(image, 3)
image = tf.image.resize(image, (RESOLUTION, RESOLUTION))
return image, tokenized_text
def apply_augmentation(image_batch, token_batch):
return augmenter(image_batch), token_batch
def run_text_encoder(image_batch, token_batch):
return (
image_batch,
token_batch,
text_encoder([token_batch, POS_IDS], training=False),
)
def prepare_dict(image_batch, token_batch, encoded_text_batch):
return {
'images': image_batch,
'tokens': token_batch,
'encoded_text': encoded_text_batch,
}
def prepare_dataset(image_paths, tokenized_texts, batch_size=1):
dataset = tf.data.Dataset.from_tensor_slices((image_paths, tokenized_texts))
dataset = dataset.shuffle(batch_size * 10)
dataset = dataset.map(process_image, num_parallel_calls=AUTO).batch(
batch_size
)
dataset = dataset.map(apply_augmentation, num_parallel_calls=AUTO)
dataset = dataset.map(run_text_encoder, num_parallel_calls=AUTO)
dataset = dataset.map(prepare_dict, num_parallel_calls=AUTO)
return dataset.prefetch(AUTO)
def prepare_training_dataset(dataset_csv):
"""Prepares training datasets."""
if dataset_csv.startswith(constants.GCS_URI_PREFIX):
if not os.path.exists(constants.LOCAL_DATA_DIR):
os.makedirs(constants.LOCAL_DATA_DIR)
logging.info(
'Start to download data from %s to %s.',
os.path.dirname(dataset_csv),
constants.LOCAL_DATA_DIR,
)
fileutils.download_gcs_dir_to_local(
os.path.dirname(dataset_csv), constants.LOCAL_DATA_DIR
)
data_frame = pd.read_csv(
os.path.join(constants.LOCAL_DATA_DIR, os.path.basename(dataset_csv))
)
data_frame['image_path'] = data_frame['image_path'].apply(
lambda x: os.path.join(constants.LOCAL_DATA_DIR, x)
)
else:
# Keeps the following codes for experiments with
# https://keras.io/examples/generative/finetune_stable_diffusion/.
data_path = tf.keras.utils.get_file(origin=dataset_csv, untar=True)
data_frame = pd.read_csv(os.path.join(data_path, 'data.csv'))
data_frame['image_path'] = data_frame['image_path'].apply(
lambda x: os.path.join(data_path, x)
)
data_frame.head()
# Load the tokenizer.
tokenizer = SimpleTokenizer()
# Method to tokenize and pad the tokens.
def process_text(caption):
tokens = tokenizer.encode(caption)
tokens = tokens + [PADDING_TOKEN] * (MAX_PROMPT_LENGTH - len(tokens))
return np.array(tokens)
# Collate the tokenized captions into an array.
tokenized_texts = np.empty((len(data_frame), MAX_PROMPT_LENGTH))
all_captions = list(data_frame['caption'].values)
for i, caption in enumerate(all_captions):
tokenized_texts[i] = process_text(caption)
# Prepare the dataset.
training_dataset = prepare_dataset(
np.array(data_frame['image_path']), tokenized_texts, batch_size=4
)
return training_dataset
class Trainer(tf.keras.Model):
"""The trainer for Keras Stable Diffusion."""
# Reference:
# https://github.com/huggingface/diffusers/blob/main/examples/text_to_image/train_text_to_image.py
def __init__(
self,
diffusion_model,
vae,
noise_scheduler,
use_mixed_precision=False,
max_grad_norm=1.0,
**kwargs,
):
super().__init__(**kwargs)
self.diffusion_model = diffusion_model
self.vae = vae
self.noise_scheduler = noise_scheduler
self.max_grad_norm = max_grad_norm
self.use_mixed_precision = use_mixed_precision
self.vae.trainable = False
def train_step(self, inputs):
images = inputs['images']
encoded_text = inputs['encoded_text']
batch_size = tf.shape(images)[0]
with tf.GradientTape() as tape:
# Project image into the latent space and sample from it.
latents = self.sample_from_encoder_outputs(
self.vae(images, training=False)
)
# Know more about the magic number here:
# https://keras.io/examples/generative/fine_tune_via_textual_inversion/
latents = latents * 0.18215
# Sample noise that we'll add to the latents.
noise = tf.random.normal(tf.shape(latents))
# Sample a random timestep for each image.
timesteps = tnp.random.randint(
0, self.noise_scheduler.train_timesteps, (batch_size,)
)
# Add noise to the latents according to the noise magnitude at each
# timestep (this is the forward diffusion process).
noisy_latents = self.noise_scheduler.add_noise(
tf.cast(latents, noise.dtype), noise, timesteps
)
# Get the target for loss depending on the prediction type
# just the sampled noise for now.
target = noise # noise_schedule.predict_epsilon == True
# Predict the noise residual and compute loss.
# pylint: disable=unnecessary-lambda
timestep_embedding = tf.map_fn(
lambda t: self.get_timestep_embedding(t), timesteps, dtype=tf.float32
)
timestep_embedding = tf.squeeze(timestep_embedding, 1)
model_pred = self.diffusion_model(
[noisy_latents, timestep_embedding, encoded_text], training=True
)
loss = self.compiled_loss(target, model_pred)
if self.use_mixed_precision:
loss = self.optimizer.get_scaled_loss(loss)
# Update parameters of the diffusion model.
trainable_vars = self.diffusion_model.trainable_variables
gradients = tape.gradient(loss, trainable_vars)
if self.use_mixed_precision:
gradients = self.optimizer.get_unscaled_gradients(gradients)
gradients = [tf.clip_by_norm(g, self.max_grad_norm) for g in gradients]
self.optimizer.apply_gradients(zip(gradients, trainable_vars))
return {m.name: m.result() for m in self.metrics}
def get_timestep_embedding(self, timestep, dim=320, max_period=10000):
half = dim // 2
log_max_preiod = tf.math.log(tf.cast(max_period, tf.float32))
# The docker builds could not support unary `-`.
# pylint: disable=invalid-unary-operand-type
freqs = tf.math.exp(
-log_max_preiod * tf.range(0, half, dtype=tf.float32) / half
)
args = tf.convert_to_tensor([timestep], dtype=tf.float32) * freqs
embedding = tf.concat([tf.math.cos(args), tf.math.sin(args)], 0)
embedding = tf.reshape(embedding, [1, -1])
return embedding
def sample_from_encoder_outputs(self, outputs):
mean, logvar = tf.split(outputs, 2, axis=-1)
logvar = tf.clip_by_value(logvar, -30.0, 20.0)
std = tf.exp(0.5 * logvar)
sample = tf.random.normal(tf.shape(mean), dtype=mean.dtype)
return mean + std * sample
def save_weights(
self, filepath, overwrite=True, save_format=None, options=None
):
# Overriding this method will allow us to use the `ModelCheckpoint`
# callback directly with this trainer class. In this case, it will
# only checkpoint the `diffusion_model` since that's what we're training
# during fine-tuning.
self.diffusion_model.save_weights(
filepath=filepath,
overwrite=overwrite,
save_format=save_format,
options=options,
)
def main(_) -> None:
# _INPUT_CSV_PATH and _OUTPUT_MODEL_DIR should have the format as
# gs://<bucket_name>/<object_name>.
if _INPUT_CSV_PATH.value:
if not _INPUT_CSV_PATH.value.startswith(constants.GCS_URI_PREFIX):
raise ValueError('The input csv path should be a gcs path like gs://<>')
if _OUTPUT_MODEL_DIR.value:
if not _OUTPUT_MODEL_DIR.value.startswith(constants.GCS_URI_PREFIX):
raise ValueError('The output model dir should be a gcs path like gs://<>')
if _USE_MP.value:
keras.mixed_precision.set_global_policy('mixed_float16')
image_encoder = ImageEncoder(RESOLUTION, RESOLUTION)
diffusion_ft_trainer = Trainer(
diffusion_model=DiffusionModel(RESOLUTION, RESOLUTION, MAX_PROMPT_LENGTH),
# Remove the top layer from the encoder, which cuts off the variance and
# only returns the mean.
vae=tf.keras.Model(
image_encoder.input,
image_encoder.layers[-2].output,
),
noise_scheduler=NoiseScheduler(),
use_mixed_precision=_USE_MP.value,
)
optimizer = tf.keras.optimizers.experimental.AdamW(
learning_rate=_LEARNING_RATE.value,
weight_decay=_WEIGHT_DECAY.value,
beta_1=_BETA_1.value,
beta_2=_BETA_2.value,
epsilon=_EPSILON.value,
)
diffusion_ft_trainer.compile(optimizer=optimizer, loss='mse')
training_dataset = prepare_training_dataset(_INPUT_CSV_PATH.value)
# Note: gcsfuse does not work for Keras. We saves the trained models locally
# first, and then copy to gcs storages.
if not os.path.exists(constants.LOCAL_MODEL_DIR):
os.makedirs(constants.LOCAL_MODEL_DIR)
# The default saved model is in HDF5.
ckpt_path = os.path.join(constants.LOCAL_MODEL_DIR, 'saved_model.h5')
ckpt_callback = tf.keras.callbacks.ModelCheckpoint(
ckpt_path,
save_weights_only=True,
monitor='loss',
mode='min',
)
diffusion_ft_trainer.fit(
training_dataset, epochs=_EPOCHS.value, callbacks=[ckpt_callback]
)
# Copies the files in constants.LOCAL_MODEL_DIR to output_model_dir.
fileutils.upload_local_dir_to_gcs(
constants.LOCAL_MODEL_DIR, _OUTPUT_MODEL_DIR.value
)
return
if __name__ == '__main__':
app.run(main)
@@ -1,40 +0,0 @@
# Dockerfile for lm-evaluation-harness evaluation.
#
# To build:
# docker build -f model_oss/lm-evaluation-harness/dockerfile/eval.Dockerfile . -t ${YOUR_IMAGE_TAG}
#
# To push to gcr:
# docker tag ${YOUR_IMAGE_TAG} gcr.io/{YOUR_PROJECT}/${YOUR_IMAGE_TAG}
# docker push gcr.io/{YOUR_PROJECT}/${YOUR_IMAGE_TAG}
FROM pytorch/pytorch:2.0.0-cuda11.7-cudnn8-devel
USER root
# Install tools.
ENV DEBIAN_FRONTEND=noninteractive
RUN apt-get update
RUN apt-get install -y --no-install-recommends apt-utils
RUN apt-get install -y --no-install-recommends curl
RUN apt-get install -y --no-install-recommends wget
RUN apt-get install -y --no-install-recommends git
# Copy license.
RUN wget https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/main/LICENSE
# Install libraries.
ENV PIP_ROOT_USER_ACTION=ignore
RUN python3 -m pip install --upgrade pip
RUN pip install google-cloud-storage==2.7.0
RUN pip install absl-py==1.4.0
# Install lm-evaluation-harness
RUN git clone https://github.com/EleutherAI/lm-evaluation-harness
WORKDIR lm-evaluation-harness
# Pin version up to date 08/08/2023
RUN git reset --hard b952a206de210b72b1bf750fbab38c26121e0dc0
# Edit tokenizer loading function to avoid using fast tokenizer for OpenLLaMA
RUN sed -i '355 i\ use_fast = not pretrained.startswith("openlm-research/open_llama")' lm_eval/models/huggingface.py
RUN sed -i '360 i\ use_fast=use_fast,' lm_eval/models/huggingface.py
# Install from source while including the sentencepiece dependency
RUN pip install -e ".[sentencepiece]"
@@ -1,64 +0,0 @@
FROM tensorflow/build:2.12-python3.9
ENV DEBIAN_FRONTEND=noninteractive
# This is added to fix docker build error related to Nvidia key update.
RUN rm -f /etc/apt/sources.list.d/cuda.list
RUN curl https://packages.cloud.google.com/apt/doc/apt-key.gpg | apt-key add -
# Install basic libs.
RUN apt-get update && apt-get install -y --no-install-recommends \
cmake \
curl \
wget \
sudo \
gnupg \
libsm6 \
libxext6 \
libxrender-dev \
lsb-release \
ca-certificates \
build-essential \
git \
vim \
libtcmalloc-minimal4
# Install google cloud CLI.
RUN wget -q https://dl.google.com/dl/cloudsdk/channels/rapid/downloads/google-cloud-cli-430.0.0-linux-x86.tar.gz
RUN tar xzf google-cloud-cli-430.0.0-linux-x86.tar.gz
RUN ./google-cloud-sdk/install.sh -q
# Make sure gsutil will use the default service account.
RUN echo '[GoogleCompute]\nservice_account = default' > /etc/boto.cfg
# Install required libs.
RUN pip install --upgrade pip
RUN pip install cloud-tpu-client==0.10
RUN pip install pyyaml==6.0
RUN pip install fsspec==2023.4.0
RUN pip install gcsfs==2023.4.0
RUN pip install tf-models-official==2.12.0
RUN pip install cloudml-hypertune==0.1.0.dev6
RUN pip install pylint==2.17.3
# Installs Reduction Server NCCL plugin.
RUN echo "deb https://packages.cloud.google.com/apt google-fast-socket main" | tee /etc/apt/sources.list.d/google-fast-socket.list \
&& curl -s -L https://packages.cloud.google.com/apt/doc/apt-key.gpg | apt-key add - \
&& apt update && apt install -y google-reduction-server
ENV PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION=cpp
# Lower the memory fragmentation, and speed up the training.
# https://github.com/tensorflow/tensorflow/issues/44176#issuecomment-783768033
ENV LD_PRELOAD=/usr/lib/x86_64-linux-gnu/libtcmalloc_minimal.so.4
# Enable userspace DNS cache
ENV GCS_RESOLVE_REFRESH_SECS=60
ENV GCS_REQUEST_CONNECTION_TIMEOUT_SECS=300
ENV GCS_METADATA_REQUEST_TIMEOUT_SECS=300
ENV GCS_READ_REQUEST_TIMEOUT_SECS=300
ENV GCS_WRITE_REQUEST_TIMEOUT_SECS=600
# Each opened GCS file takes GCS_READ_CACHE_BLOCK_SIZE_MB of RAM, reduce the
# value from the default 64MB to 8MB to decrease memory footprint.
ENV GCS_READ_CACHE_BLOCK_SIZE_MB=8
@@ -1,13 +0,0 @@
FROM gcr.io/automl-migration-test/movinet-base:latest
# Copy license.
RUN wget https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/main/LICENSE
RUN wget https://raw.githubusercontent.com/tensorflow/models/954dd73bffd43174bd3ca26a4a34abebe4147570/official/projects/movinet/tools/export_saved_model.py \
-O /usr/local/lib/python3.9/dist-packages/official/projects/movinet/tools/export_saved_model.py
WORKDIR /automl_vision
ENV PYTHONPATH "${PYTHONPATH}:/automl_vision/util"
ENTRYPOINT ["python3", "-m", "official.projects.movinet.tools.export_saved_model"]
@@ -1,18 +0,0 @@
FROM gcr.io/automl-migration-test/movinet-base:latest
# Copy license.
RUN wget https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/main/LICENSE
RUN pip install flask==2.3.2
RUN pip install waitress==2.1.2
RUN mkdir -p /automl_vision/movinet/serving
COPY model_oss/movinet/serving /automl_vision/movinet/serving
COPY model_oss/util /automl_vision/util
WORKDIR /automl_vision
ENV PYTHONPATH "${PYTHONPATH}:/automl_vision/util"
ENTRYPOINT ["flask", "--app", "movinet.serving.serving_main", "run"]
CMD ["--host=0.0.0.0", "--port=8501"]
@@ -1,18 +0,0 @@
FROM gcr.io/automl-migration-test/movinet-base:latest
# Copy license.
RUN wget https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/main/LICENSE
RUN mkdir -p /automl_vision/movinet
COPY model_oss/movinet/*.py /automl_vision/movinet/
COPY model_oss/util /automl_vision/util
WORKDIR /automl_vision
ENV PYTHONPATH "${PYTHONPATH}:/automl_vision/util"
# Run pylint to validate code.
COPY .pylintrc /automl_vision/.pylintrc
RUN find . -type f -name "*.py" | xargs pylint --rcfile=./.pylintrc --errors-only
ENTRYPOINT ["python3","movinet/train.py"]
@@ -1,142 +0,0 @@
"""Main executable for MoViNet online / batch predictions."""
from collections.abc import Sequence
import json
import os
from absl import app
from absl import logging
import flask
import tensorflow as tf
import waitress
from movinet.serving import video_serving_lib
from util import constants
flask_app = flask.Flask(__name__)
logging.set_verbosity(logging.INFO)
movinet_model = None
_BATCH_SIZE = int(os.environ.get('BATCH_SIZE', '1'))
_NUM_FRAMES = int(os.environ.get('NUM_FRAMES', '32'))
_FPS = float(os.environ.get('FPS', '5'))
_OVERLAP_FRAMES = int(os.environ.get('OVERLAP_FRAMES', '24'))
_OBJECTIVE = os.environ.get(
'OBJECTIVE', constants.OBJECTIVE_VIDEO_CLASSIFICATION
).lower()
# VAR parameters.
_CONFIDENCE_THRESHOLD = float(os.environ.get('CONFIDENCE_THRESHOLD', '0.5'))
_MIN_GAP_TIME = float(os.environ.get('MIN_GAP_TIME', '1.5'))
def load_movinet_model() -> None:
model_path = os.environ.get('MODEL_PATH')
if not model_path:
raise app.UsageError('Missing MODEL_PATH environment variable.')
# We just reload the weights of the fine-tuned diffusion model.
logging.info('Initialize finetuned models from: %s', model_path)
global movinet_model
movinet_model = tf.saved_model.load(model_path)
load_movinet_model()
def error(message: str) -> str:
"""Returns a JSON representing an error response."""
return json.dumps({
'success': False,
'error': message,
})
# The health check route is required for docker deployment in google cloud.
@flask_app.route('/ping')
def ping() -> flask.Response:
"""Health checks."""
return flask.Response(status=200)
# The return should be `Response` for docker deployment in google cloud.
@flask_app.route('/predict', methods=['GET', 'POST'])
def predict_model() -> flask.Response:
"""Predictions."""
if flask.request.method == 'POST':
contents = flask.request.get_json(force=True)
logging.info('The input contents are: %s', contents)
instances = contents.get('instances', [])
try:
predictions = []
for instance in instances:
executor = video_serving_lib.parse_request(instance)
prediction = executor.get_prediction(
movinet_model,
_BATCH_SIZE,
_FPS,
_NUM_FRAMES,
_OVERLAP_FRAMES,
_OBJECTIVE,
)
if _OBJECTIVE == constants.OBJECTIVE_VIDEO_CLASSIFICATION:
prediction = video_serving_lib.postprocess_vcn(prediction)
elif _OBJECTIVE == constants.OBJECTIVE_VIDEO_ACTION_RECOGNITION:
prediction = video_serving_lib.postprocess_var(
executor.windows, prediction, _CONFIDENCE_THRESHOLD, _MIN_GAP_TIME
)
predictions.append(prediction)
except ValueError as e:
return flask.Response(
error(str(e)), status=500, mimetype='application/json'
)
return flask.Response(
response=json.dumps({
'success': True,
'predictions': predictions,
}),
status=200,
mimetype='application/json',
)
else:
return flask.Response(
response=json.dumps({
'success': True,
'isalive': movinet_model is not None,
}),
status=200,
mimetype='application/json',
)
def main(argv: Sequence[str]) -> None:
if len(argv) > 1:
raise app.UsageError('Too many command-line arguments.')
# This is used when running locally only. When deploying to Google App
# Engine, a webserver process such as Gunicorn will serve the app.
# # Debug deployment.
# flask_app.run(host='0.0.0.0', port=8501, debug=True)
# Prod deployment.
if _OBJECTIVE not in [
constants.OBJECTIVE_VIDEO_CLASSIFICATION,
constants.OBJECTIVE_VIDEO_ACTION_RECOGNITION,
]:
raise app.UsageError('Objective must be vcn or var.')
logging.info(
'Env: batch_size: %s, num_frames: %s, fps: %s, overlap_frames: %s',
_BATCH_SIZE,
_NUM_FRAMES,
_FPS,
_OVERLAP_FRAMES,
)
waitress.serve(flask_app, host='0.0.0.0', port=8501)
if __name__ == '__main__':
app.run(main)
@@ -1,462 +0,0 @@
"""Lib for handling video prediction requests.
The VCN inference algorithm is as follows:
1. Find all video frames within the given clip according to the sampling FPS.
2. Create possibly overlapping sliding windows according to the num_frames and
overlap_frames parameters. The last window might have a larger overlap if it
doesn't exactly fit.
3. Run model inference on each sliding window and compute softmax to obtain
probabilities.
4. Average the probabilities over all sliding windows.
The VAR inference algorithm is very similar to VCN, with a few differences:
1. The last sliding window is discarded if it does not exactly fit.
2. Instead of averaging, the postprocessing consists of temporal nonmaximal
suppression and removing background and low-confidence labels.
"""
from __future__ import annotations
import dataclasses
import os
from typing import Any, Dict, Optional, Sequence, Union, cast
from absl import logging
import cv2
import numpy as np
import tensorflow as tf
from util import constants
from util import fileutils
_JSON_LABEL_KEY = 'label'
_JSON_GCS_URI_KEY = 'content'
_JSON_CONFIDENCE_KEY = 'confidence'
_JSON_START_TIME_KEY = 'timeSegmentStart'
_JSON_END_TIME_KEY = 'timeSegmentEnd'
_BACKGROUND_LABEL = 0
_JSON_REQUIRED_KEYS = [
_JSON_GCS_URI_KEY,
_JSON_START_TIME_KEY,
_JSON_END_TIME_KEY,
]
_IMAGE_WIDTH = int(os.environ.get('IMAGE_WIDTH', '172'))
_IMAGE_HEIGHT = int(os.environ.get('IMAGE_HEIGHT', '172'))
@dataclasses.dataclass
class DetectionOutput:
timestamp: float
label: int
confidence: float
def to_json_obj(self) -> Dict[str, Union[int, float]]:
"""Encodes self as a dict for JSON serialization."""
return {
_JSON_LABEL_KEY: self.label,
_JSON_START_TIME_KEY: self.timestamp,
_JSON_END_TIME_KEY: self.timestamp,
_JSON_CONFIDENCE_KEY: self.confidence,
}
def create_detection_output(
timestamp: float, predictions: np.ndarray
) -> DetectionOutput:
label = np.argmax(predictions).item()
confidence: float = predictions[label].item()
return DetectionOutput(timestamp, label, confidence)
class SlidingWindow:
"""Represents a sliding window with start / end timestamps."""
def __init__(self, fps: float, frames: Sequence[int]):
if not frames:
raise ValueError('Sliding window cannot be empty.')
self.frames = frames
self.start_time = frames[0] / fps
self.end_time = frames[-1] / fps
self.frame_data: list[Optional[np.ndarray]] = []
self.clear_frame_data()
def load_cache_from(self, other: SlidingWindow) -> int:
"""Loads cache from another sliding window if possible."""
cache_count = 0
for i, frame in enumerate(self.frames):
try:
other_idx = other.frames.index(frame)
self.frame_data[i] = other.frame_data[other_idx]
cache_count += 1
except ValueError:
# Cache miss.
pass
return cache_count
def load_frames(self, video: Any) -> Sequence[np.ndarray]:
"""Loads frames of this sliding window from a video."""
for i, frame in enumerate(self.frames):
if self.frame_data[i] is None:
video.set(cv2.CAP_PROP_POS_FRAMES, frame)
ret, frame = video.read()
if not ret:
raise IOError(f'Failed to read video at frame {frame}.')
self.frame_data[i] = cv2.resize(frame, (_IMAGE_WIDTH, _IMAGE_HEIGHT))
return cast(Sequence[np.ndarray], self.frame_data)
def clear_frame_data(self) -> None:
"""Clears frame data of this sliding window to reduce memory usage."""
self.frame_data: list[Optional[np.ndarray]] = [None] * len(self)
def __len__(self) -> int:
return len(self.frames)
@property
def middle_timestamp(self) -> float:
return (self.start_time + self.end_time) / 2
def _get_sliding_windows(
frames: Sequence[int],
original_fps: float,
window_size: int,
overlap: int,
flush_last_window: bool,
) -> Sequence[SlidingWindow]:
"""Computes a list of sliding windows from frames.
Args:
frames: A list of frame indices.
original_fps: Frames per second of the original video.
window_size: Number of frames in a single window.
overlap: Number of overlapping frames in adjacent windows.
flush_last_window: Where to flush the last window if there are not enough
frames left.
Returns:
A list of sliding windows, each has a list of frame indices. The last two
windows might have a larger overlap if the last window does not exactly fit
and flush_last_window is set to True.
Raises:
ValueError: Arguments are invalid.
"""
if window_size <= overlap:
raise ValueError(f'Window size {window_size} <= overlap {overlap}')
total_frames = len(frames)
windows: list[SlidingWindow] = []
for i in range(0, total_frames, window_size - overlap):
if i == 0 or i + window_size <= total_frames:
windows.append(SlidingWindow(original_fps, frames[i : i + window_size]))
elif i + overlap < total_frames and flush_last_window:
# Some frames in this window are not covered by the previous window.
windows.append(
SlidingWindow(
original_fps, frames[total_frames - window_size : total_frames]
)
)
return windows
def _sample_frame_indices(
start_time: float,
end_time: float,
original_fps: float,
sample_fps: float,
max_frames: int,
padding_left: int = 0,
padding_right: int = 0,
) -> Sequence[int]:
"""Samples frames from start_time to end_time by sample_fps.
Args:
start_time: Start timestamp in seconds.
end_time: End timestamp in seconds.
original_fps: Frames per second of the original video.
sample_fps: Number of frames to sample per second.
max_frames: Total number of frames in the video.
padding_left: Padding to add to the start in frames. Padded frames will be
duplicates of the first frame.
padding_right: Padding to add to the end in frames. Padded frames will be
duplicates of the last frame.
Returns:
A list of sampled frame indices.
"""
ret = [
min(max_frames - 1, round(t * original_fps))
for t in np.arange(start_time, end_time, 1 / sample_fps)
]
if ret:
ret = [ret[0]] * padding_left + ret + [ret[-1]] * padding_right
return ret
class VideoPredictionExecutor:
"""Represents a Video prediction request with a video clip."""
def __init__(self, gcs_uri: str, start_time: float, end_time: float):
self._gcs_uri = gcs_uri
self._start_time = start_time
self._end_time = end_time
self.windows: Sequence[SlidingWindow] = []
self._last_window: SlidingWindow = None
def _read_frames_from_window(
self, video: Any, new_window: SlidingWindow
) -> Sequence[np.ndarray]:
"""Reads video frames from the new window.
Args:
video: Video loaded with cv2.
new_window: A list of sorted frame indices in the new window.
Returns:
Frame data from the video as a list of numpy arrays.
Raises:
IOError: Failed to read video.
"""
# Caches frames as much as possible.
if self._last_window is not None:
cache_count = new_window.load_cache_from(self._last_window)
logging.info('Cached %d frames.', cache_count)
self._last_window.clear_frame_data()
self._last_window = new_window
return new_window.load_frames(video)
def _predict(
self, model: Any, video: Any, batched_windows: Sequence[SlidingWindow]
) -> np.ndarray:
"""Run model inference on specific frames of a video.
Args:
model: MoViNet model.
video: Video loaded with cv2.
batched_windows: A batch of sliding windows to predict. Each element is an
integer frame index. Must have equal number of frames in each window.
Returns:
Prediction results.
Raises:
ValueError: Batched windows are not sorted, or do not have equal number of
frames in each window.
IOError: Failed to read video.
"""
if any(
(
len(window) != len(batched_windows[0])
for window in batched_windows[1:]
)
):
raise ValueError(
'Batched windows do not have equal number of frames in each window.'
)
batch = []
logging.info('Loading video frames...')
for window in batched_windows:
logging.info('Predict frames: %s', window.frames)
frames = self._read_frames_from_window(video, window)
batch.append(frames)
input_tensor = tf.convert_to_tensor(batch, dtype=tf.float32) / 255.0
logging.info('Predict: Input tensor shape %s', input_tensor.shape)
predictions = model({'image': input_tensor})
logging.info('Running softmax on predictions...')
predictions = tf.nn.softmax(predictions, axis=1)
return predictions.numpy()
def get_prediction(
self,
model: Any,
batch_size: int,
fps: float,
num_frames: int,
overlap_frames: int,
objective: str,
) -> Sequence[np.ndarray]:
"""Predicts the video clip with the model.
Args:
model: The loaded MoViNet model.
batch_size: Batch size for prediction.
fps: Video sampling FPS.
num_frames: Number of frames in a single predictions. If the model is
exported with a fixed input shape, this must match its num_frames
dimension.
overlap_frames: Number of overlapping frames of consecutive sliding
windows.
objective: A string `vcn` or `var`.
Returns:
A list of floats as the prediction response.
Raises:
IOError: The video fails to load.
ValueError: Some arguments are invalid.
"""
if objective not in [
constants.OBJECTIVE_VIDEO_CLASSIFICATION,
constants.OBJECTIVE_VIDEO_ACTION_RECOGNITION,
]:
raise ValueError(f'{objective} objective is not supported.')
# cv2 expects a local path so we need to download the video from GCS.
local_file_path = fileutils.generate_tmp_path(
os.path.splitext(self._gcs_uri)[1]
)
logging.info('Downloading %s to %s...', self._gcs_uri, local_file_path)
fileutils.download_gcs_file_to_local(self._gcs_uri, local_file_path)
logging.info('Download %s complete.', self._gcs_uri)
# Loads video.
video = cv2.VideoCapture(local_file_path)
total_frames = video.get(cv2.CAP_PROP_FRAME_COUNT)
original_fps = video.get(cv2.CAP_PROP_FPS)
if not original_fps:
# 0 or None indicates the video is invalid.
raise IOError(f'Failed to load {self._gcs_uri}.')
video_length = total_frames / original_fps
self._start_time = max(0, self._start_time)
self._end_time = min(video_length, self._end_time)
padding = (
(num_frames // 2)
if objective == constants.OBJECTIVE_VIDEO_ACTION_RECOGNITION
else 0
)
# Computes sliding windows.
frame_indices = _sample_frame_indices(
self._start_time,
self._end_time,
original_fps,
fps,
total_frames,
padding,
padding,
)
logging.info('Frame indices: %s', frame_indices)
self.windows = _get_sliding_windows(
frame_indices,
original_fps,
num_frames,
overlap_frames,
objective != 'var',
)
if not self.windows:
raise ValueError(
f'No sliding windows found from {self._start_time} to'
f' {self._end_time}.'
)
self._last_window = None
# Runs inference.
predictions = []
for i in range(0, len(self.windows), batch_size):
predictions.extend(
self._predict(model, video, self.windows[i : i + batch_size])
)
return predictions
def parse_request(req_json: Any) -> VideoPredictionExecutor:
"""Parses VideoPredictionExecutor from request JSON object.
Args:
req_json: Request JSON object.
Returns:
Parsed VideoPredictionExecutor.
Raises:
ValueError: Request JSON object is invalid.
"""
for key in _JSON_REQUIRED_KEYS:
if key not in req_json:
raise ValueError(f'{key} not found in {req_json}.')
gcs_uri = req_json[_JSON_GCS_URI_KEY]
start_time = float(req_json[_JSON_START_TIME_KEY].removesuffix('s'))
end_time = float(req_json[_JSON_END_TIME_KEY].removesuffix('s'))
return VideoPredictionExecutor(gcs_uri, start_time, end_time)
def postprocess_vcn(predictions: Sequence[np.ndarray]) -> Sequence[float]:
"""Aggregates VCN predictions of sliding windows."""
return np.mean(predictions, axis=0).tolist()
def temporal_nonmaximal_suppression(
detections: Sequence[DetectionOutput], min_gap_time: float
) -> Sequence[DetectionOutput]:
"""Nonmaximal suppression for key frame detection.
For consecutive packets of the same label within a pre-defined duration, we
only keep the one with the highest confidence score. Such duration can be
determined by performing data analysis on users' dataset.
Args:
detections: A list of DetectionOutputs.
min_gap_time: Minimum time between consecutive key frames of the same label
in seconds.
Returns:
DetectionOutput after nonmaximal suppression sorted in ascending timestamps.
"""
max_label = max([detection.label for detection in detections])
prev_detections: list[Optional[DetectionOutput]] = [None] * (max_label + 1)
ret: list[DetectionOutput] = []
by_time = lambda x: x.timestamp
for detection in sorted(detections, key=by_time):
prev_detection = prev_detections[detection.label]
prev_detections[detection.label] = detection
if not prev_detection:
continue
if detection.timestamp - prev_detection.timestamp > min_gap_time:
ret.append(prev_detection)
continue
detection.confidence = max(detection.confidence, prev_detection.confidence)
ret.extend((d for d in prev_detections if d is not None))
return sorted(ret, key=by_time)
def postprocess_var(
windows: Sequence[SlidingWindow],
predictions: Sequence[np.ndarray],
confidence_threshold: float,
min_gap_time: float,
) -> Sequence[Dict[str, Any]]:
"""Generates a list of detected keyframes from sliding window predictions.
Args:
windows: Sliding windows.
predictions: A list of predictions of sliding windows.
confidence_threshold: Only probabilities greater than this threshold will
contribute to the final result.
min_gap_time: Minimum time between consecutive key frames of the same label
in seconds. Used in temporal nonmaximal suppression.
Returns:
A sequence of dictionaries, each item has the following keys:
- label: Integer label of the detection result.
- timeSegmentStart: Start timestamp in seconds.
- timeSegmentEnd: End timestamp in seconds. Always equals timeSegmentStart.
"""
if len(windows) != len(predictions):
raise ValueError('Mismatched # of windows with # of predictions.')
# Creates detection results from windows, filtering out the background label.
detections = [
create_detection_output(window.middle_timestamp, predictions[i])
for i, window in enumerate(windows)
]
# Temporal nonmaximal suppression.
detections = temporal_nonmaximal_suppression(detections, min_gap_time)
# Filters out ones with low confidence and the background label.
return [
x.to_json_obj()
for x in detections
if x.label != _BACKGROUND_LABEL and x.confidence > confidence_threshold
]
@@ -1,210 +0,0 @@
"""Main executable for MoViNet docker."""
import json
import os
from typing import Sequence, Any
from absl import app
from absl import flags
from absl import logging
import gin
import hypertune
import tensorflow as tf
from util import constants
from util import hypertune_utils
from official.common import distribute_utils
from official.common import flags as tfm_flags
from official.core import task_factory
from official.core import train_lib
from official.core import train_utils
from official.modeling import performance
# Import movinet libraries to register the backbone and model into tf.vision
# model garden factory.
# pylint: disable=unused-import
from official.projects.movinet.modeling import movinet
from official.projects.movinet.modeling import movinet_model
from official.vision import registry_imports
# pylint: enable=unused-import
FLAGS = flags.FLAGS
_FILE_TYPE_TFRECORD = 'tfrecord'
_LEARNING_RATE = flags.DEFINE_float(
'learning_rate', None, 'The learning rate of this training job.'
)
_NUM_CLASSES = flags.DEFINE_integer(
'num_classes', None, 'The number of classes.'
)
_INIT_CHECKPOINT = flags.DEFINE_string(
'init_checkpoint', None, 'The initial checkpoint of this training job.'
)
_INPUT_TRAIN_DATA_PATH = flags.DEFINE_string(
'input_train_data_path', None, 'Input train data path.'
)
_INPUT_VALIDATION_DATA_PATH = flags.DEFINE_string(
'input_validation_data_path', None, 'Input validation data path.'
)
_GLOBAL_BATCH_SIZE = flags.DEFINE_integer(
'global_batch_size', None, 'Global batch size.'
)
_PREFETCH_BUFFER_SIZE = flags.DEFINE_integer(
'prefetch_buffer_size', None, 'Prefetch buffer size.'
)
_SHUFFLE_BUFFER_SIZE = flags.DEFINE_integer(
'shuffle_buffer_size', None, 'Shuffle buffer size.'
)
_TRAIN_STEPS = flags.DEFINE_integer('train_steps', None, 'Train steps.')
_LOG_LEVEL = flags.DEFINE_enum(
'log_level',
'INFO',
['FATAL', 'ERROR', 'WARNING', 'INFO', 'DEBUG'],
'Log level.',
)
def parse_params() -> Any:
"""Parses parameters."""
gin.parse_config_files_and_bindings(FLAGS.gin_file, FLAGS.gin_params)
params = train_utils.parse_configuration(FLAGS, lock_return=False)
if _INIT_CHECKPOINT.value:
params.task.init_checkpoint = _INIT_CHECKPOINT.value
params.task.init_checkpoint_modules = 'backbone'
if _NUM_CLASSES.value:
params.task.model.num_classes = _NUM_CLASSES.value
params.task.train_data.num_classes = _NUM_CLASSES.value
params.task.validation_data.num_classes = _NUM_CLASSES.value
# If users set input train/validation data path, we assume the data are
# converted from data converter as tfrecord. Users can use tfds by writing
# their own config directly, and no need to override this parameter.
if _INPUT_TRAIN_DATA_PATH.value:
params.task.train_data.input_path = _INPUT_TRAIN_DATA_PATH.value
params.task.train_data.file_type = _FILE_TYPE_TFRECORD
params.task.train_data.tfds_name = ''
if _INPUT_VALIDATION_DATA_PATH.value:
params.task.validation_data.input_path = _INPUT_VALIDATION_DATA_PATH.value
params.task.validation_data.file_type = _FILE_TYPE_TFRECORD
params.task.validation_data.tfds_name = ''
if _GLOBAL_BATCH_SIZE.value:
params.task.train_data.global_batch_size = _GLOBAL_BATCH_SIZE.value
params.task.validation_data.global_batch_size = _GLOBAL_BATCH_SIZE.value
if _PREFETCH_BUFFER_SIZE.value:
params.task.train_data.prefetch_buffer_size = _PREFETCH_BUFFER_SIZE.value
params.task.validation_data.prefetch_buffer_size = (
_PREFETCH_BUFFER_SIZE.value
)
if _SHUFFLE_BUFFER_SIZE.value:
params.task.train_data.shuffle_buffer_size = _SHUFFLE_BUFFER_SIZE.value
if _TRAIN_STEPS.value:
params.trainer.train_steps = _TRAIN_STEPS.value
if _LEARNING_RATE.value:
logging.info('Updating learning_rate: %s', _LEARNING_RATE.value)
# Use `get` method of train_utils.hyperparams.OneOfConfig to get learning
# rate config.
learning_rate = params.trainer.optimizer_config.learning_rate.get()
if hasattr(learning_rate, 'initial_learning_rate'):
learning_rate.initial_learning_rate = _LEARNING_RATE.value
else:
logging.warning('Cannot set learning rate for %s', learning_rate)
# Set default params for best checkpoints.
params.trainer.best_checkpoint_export_subdir = constants.BEST_CKPT_DIRNAME
params.trainer.best_checkpoint_metric_comp = constants.BEST_CKPT_METRIC_COMP
params.trainer.best_checkpoint_eval_metric = (
constants.VIDEO_CLASSIFICATION_BEST_EVAL_METRIC
)
return params
def main(argv: Sequence[str]) -> None:
logging.set_verbosity(_LOG_LEVEL.value)
if len(argv) > 1:
raise app.UsageError('Too many command-line arguments.')
params = parse_params()
logging.info('The actual training parameters are:\n%s', params.as_dict())
model_dir: str = os.path.join(
FLAGS.model_dir,
constants.TRIAL_PREFIX + hypertune_utils.get_trial_id_from_environment(),
)
logging.info('model_dir: %s', model_dir)
if 'train' in FLAGS.mode:
# Pure eval modes do not output yaml files. Otherwise continuous eval job
# may race against the train job for writing the same file.
train_utils.serialize_config(params, model_dir)
# Sets mixed_precision policy. Using 'mixed_float16' or 'mixed_bfloat16'
# can have significant impact on model speeds by utilizing float16 in case of
# GPUs, and bfloat16 in the case of TPUs. loss_scale takes effect only when
# dtype is float16
if params.runtime.mixed_precision_dtype:
performance.set_mixed_precision_policy(params.runtime.mixed_precision_dtype)
distribution_strategy = distribute_utils.get_distribution_strategy(
distribution_strategy=params.runtime.distribution_strategy,
all_reduce_alg=params.runtime.all_reduce_alg,
num_gpus=params.runtime.num_gpus,
tpu_address=params.runtime.tpu,
)
# Create task and run experiment.
with distribution_strategy.scope():
task = task_factory.get_task(params.task, logging_dir=model_dir)
train_lib.run_experiment(
distribution_strategy=distribution_strategy,
task=task,
mode=FLAGS.mode,
params=params,
model_dir=model_dir,
)
train_utils.save_gin_config(FLAGS.mode, model_dir)
eval_metric_name = constants.VIDEO_CLASSIFICATION_BEST_EVAL_METRIC
eval_filepath = os.path.join(
model_dir, constants.BEST_CKPT_DIRNAME, constants.BEST_CKPT_EVAL_FILENAME
)
logging.info('Load eval metrics from: %s.', eval_filepath)
with tf.io.gfile.GFile(eval_filepath, 'rb') as f:
eval_metric_results = json.load(f)
logging.info('eval metrics are: %s.', eval_metric_results)
if (
eval_metric_name in eval_metric_results
and constants.BEST_CKPT_STEP_NAME in eval_metric_results
):
hp_metric = eval_metric_results[eval_metric_name]
hp_step = int(eval_metric_results[constants.BEST_CKPT_STEP_NAME])
hpt = hypertune.HyperTune()
hpt.report_hyperparameter_tuning_metric(
hyperparameter_metric_tag=constants.HP_METRIC_TAG,
metric_value=hp_metric,
global_step=hp_step,
)
logging.info(
'Send HP metric: %f and steps %d to hyperparameter tuning.',
hp_metric,
hp_step,
)
else:
logging.info(
'Either %s or %s is not included in the evaluation results: %s.',
eval_metric_name,
constants.BEST_CKPT_STEP_NAME,
eval_metric_results,
)
if __name__ == '__main__':
tfm_flags.define_flags()
app.run(main)
@@ -1,67 +0,0 @@
# Dockerfile for basic serving dockers for OpenCLIP.
#
# To build:
# docker build -f model_oss/open_clip/dockerfile/serve.Dockerfile . -t ${YOUR_IMAGE_TAG}
#
# To push to gcr:
# docker tag ${YOUR_IMAGE_TAG} gcr.io/${YOUR_PROJECT}/${YOUR_IMAGE_TAG}
# docker push gcr.io/${YOUR_PROJECT}/${YOUR_IMAGE_TAG}
# Switch to this base image for gpu serve.
FROM pytorch/torchserve:0.7.1-gpu
USER root
# Install tools.
RUN apt-get update && apt-get install -y --no-install-recommends \
curl \
wget \
vim
# Copy license.
RUN wget https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/main/LICENSE
ENV infer_port=7080
ENV mng_port=7081
ENV model_name="transformers_serving"
ENV PATH="/home/model-server/:${PATH}"
# Install libraries.
RUN python3 -m pip install --upgrade pip
RUN pip install torch==1.13.1
RUN pip install open_clip_torch==2.20.0
RUN pip install pillow==9.5.0
RUN pip install google-cloud-storage==2.7.0
# Copy model artifacts.
COPY model_oss/open_clip/handler.py /home/model-server/handler.py
COPY model_oss/util/ /home/model-server/util/
ENV PYTHONPATH /home/model-server/
# Create torchserve configuration file.
RUN echo \
"default_response_timeout=1800\n" \
"service_envelope=json\n" \
"inference_address=http://0.0.0.0:${infer_port}\n" \
"management_address=http://0.0.0.0:${mng_port}" >> /home/model-server/config.properties
# Expose ports.
EXPOSE ${infer_port}
EXPOSE ${mng_port}
# Archive model artifacts and dependencies.
# Do not set --model-file and --serialized-file because model and checkpoint will be dynamically loaded in handler.py.
RUN torch-model-archiver \
--model-name=${model_name} \
--version=1.0 \
--handler=/home/model-server/handler.py \
--runtime=python3 \
--export-path=/home/model-server/model-store \
--archive-format=default \
--force
# Run Torchserve HTTP serve to respond to prediction requests.
CMD ["torchserve", "--start", \
"--ts-config", "/home/model-server/config.properties", \
"--models", "${model_name}=${model_name}.mar", \
"--model-store", "/home/model-server/model-store"]
@@ -1,53 +0,0 @@
# Dockerfile for training dockers with OpenCLIP.
#
# To build:
# docker build -f model_oss/open_clilp/dockerfile/train.Dockerfile . -t ${YOUR_IMAGE_TAG}
#
# To push to gcr:
# docker tag ${YOUR_IMAGE_TAG} gcr.io/${YOUR_PROJECT}/${YOUR_IMAGE_TAG}
# docker push gcr.io/${YOUR_PROJECT}/${YOUR_IMAGE_TAG}
FROM pytorch/pytorch:2.0.0-cuda11.7-cudnn8-devel
# Install tools.
ENV DEBIAN_FRONTEND=noninteractive
RUN apt-get update
RUN apt-get install -y --no-install-recommends apt-utils
RUN apt-get install -y --no-install-recommends curl
RUN apt-get install -y --no-install-recommends wget
RUN apt-get install -y --no-install-recommends git
RUN apt-get install -y --no-install-recommends jq
RUN apt-get install -y --no-install-recommends gnupg
RUN apt-get install -y --no-install-recommends build-essential
ENV PIP_ROOT_USER_ACTION=ignore
RUN apt-get update && apt-get install -y --no-install-recommends \
curl \
wget \
vim
# Copy license.
RUN wget https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/main/LICENSE
# Prepare artifacts.
WORKDIR /workspace
RUN git clone --branch main https://github.com/mlfoundations/open_clip.git
WORKDIR ./open_clip
RUN git reset --hard 67e5e5ec8741281eb9b30f640c26f91c666308b7
# Install libraries.
RUN pip install webdataset==0.2.5
RUN pip install regex==2023.6.3
RUN pip install ftfy==6.1.1
RUN pip install pandas==2.0.3
RUN pip install braceexpand==0.1.7
RUN pip install huggingface_hub==0.16.4
RUN pip install transformers==4.31.0
RUN pip install timm==0.9.2
RUN pip install fsspec==2023.6.0
RUN pip install sentencepiece==0.1.99
RUN pip install protobuf==3.20.3
RUN pip install tensorboard==2.12.2
# Switch work folder for training.
WORKDIR ./src
@@ -1,142 +0,0 @@
"""Custom handler for OpenCLIP model."""
# pylint:disable=g-importing-member
import enum
import logging
import os
from typing import Any, Dict, List
import open_clip
import torch
from ts.torch_handler.base_handler import BaseHandler
from google3.cloud.ml.applications.vision.model_garden.model_oss.util import constants
from google3.cloud.ml.applications.vision.model_garden.model_oss.util import fileutils
from google3.cloud.ml.applications.vision.model_garden.model_oss.util import image_format_converter
@enum.unique
class Precision(enum.Enum):
AMP = "amp"
AMP_BF16 = "amp_bf16"
AMP_BFLOAT16 = "amp_bfloat16"
BF16 = "bf16"
FP16 = "fp16"
PURE_BF16 = "pure_bf16"
PURE_FP16 = "pure_fp16"
FP32 = "fp32"
# Supported checkpoint&model pairs:
# https://github.com/mlfoundations/open_clip#pretrained-model-interface
_DEFAULT_CHECKPOINT = "openai"
_DEFAULT_MODEL = "RN50"
_DEFAULT_PRECISION = Precision.AMP
_ZERO_CLASSIFICATION = "zero-shot-image-classification"
_FEATURE_EMBEDDING = "feature-embedding"
_VALID_TASKS = frozenset([_ZERO_CLASSIFICATION, _FEATURE_EMBEDDING])
_IMAGE_KEY = "image"
_TEXT_KEY = "text"
_IMAGE_FEATURES_KEY = "image_features"
_TEXT_FEATURES_KEY = "text_features"
class OpenclipHandler(BaseHandler):
"""Custom handler for OpenCLIP."""
def initialize(self, context: Any):
"""Custom initialize."""
properties = context.system_properties
self.map_location = (
"cuda"
if torch.cuda.is_available() and properties.get("gpu_id") is not None
else "cpu"
)
self.device = torch.device(
self.map_location + ":" + str(properties.get("gpu_id"))
if torch.cuda.is_available() and properties.get("gpu_id") is not None
else self.map_location
)
self.manifest = context.manifest
model_name = os.environ.get("MODEL", _DEFAULT_MODEL)
precision = os.environ.get("PRECISION", _DEFAULT_PRECISION)
checkpoint = os.environ.get("CHECKPOINT", _DEFAULT_CHECKPOINT)
self.task = os.environ.get("TASK", _FEATURE_EMBEDDING)
if self.task not in _VALID_TASKS:
raise ValueError(f"Invalid task: {self.task}.")
logging.info(
"Handler initializing task:%s, model:%s, precision:%s, checkpoint:%s",
self.task,
model_name,
precision,
checkpoint,
)
if checkpoint != _DEFAULT_CHECKPOINT:
local_fname = os.path.join(constants.LOCAL_MODEL_DIR, "model.pt")
fileutils.download_gcs_file_to_local(checkpoint, local_fname)
checkpoint = local_fname
self.model, _, self.preprocessor = open_clip.create_model_and_transforms(
model_name, pretrained=checkpoint, precision=precision
)
self.tokenizer = open_clip.get_tokenizer(model_name)
self.initialized = True
def preprocess(self, data: Any) -> List[Dict[str, Any]]:
"""Preprocess input data."""
logging.info("preprocessing: %d instances received.", len(data))
processed_list = []
for item in data:
sample = {}
if _IMAGE_KEY in item:
sample[_IMAGE_KEY] = self.preprocessor(
image_format_converter.base64_to_image(item[_IMAGE_KEY])
).unsqueeze(0)
if _TEXT_KEY in item:
sample[_TEXT_KEY] = self.tokenizer(item[_TEXT_KEY])
processed_list.append(sample)
return processed_list
def inference(
self, data: List[Dict[str, Any]], *args, **kwargs
) -> List[Dict[str, Any]]:
feature_list = []
with torch.no_grad(), torch.cuda.amp.autocast():
for item in data:
sample = {}
if _IMAGE_KEY in item:
sample[_IMAGE_FEATURES_KEY] = self.model.encode_image(
item[_IMAGE_KEY]
)
if _TEXT_KEY in item:
sample[_TEXT_FEATURES_KEY] = self.model.encode_text(item[_TEXT_KEY])
feature_list.append(sample)
return feature_list
def postprocess(self, features: List[Dict[str, Any]]) -> List[Dict[str, Any]]:
"""Postprocess the image/text featreus for downstream task."""
preds = []
if self.task == _FEATURE_EMBEDDING:
for item in features:
preds.append({k: v.tolist() for k, v in item.items()})
elif self.task == _ZERO_CLASSIFICATION:
for item in features:
image_features = item.get(_IMAGE_FEATURES_KEY, None)
text_features = item.get(_TEXT_FEATURES_KEY, None)
if image_features is None or text_features is None:
raise ValueError(
"Missing input for {} task. {} received.".format(
_ZERO_CLASSIFICATION, item.keys()
)
)
image_features /= image_features.norm(dim=-1, keepdim=True)
text_features /= text_features.norm(dim=-1, keepdim=True)
text_probs = (100.0 * image_features @ text_features.T).softmax(dim=-1)
preds.append(text_probs.tolist())
return preds
@@ -1,142 +0,0 @@
"""Causal language modeling with LoRA models."""
# pylint: disable=g-importing-member
from datasets import load_dataset
from peft import get_peft_model
from peft import LoraConfig
import torch
from torch import nn
import transformers
from transformers import AutoModelForCausalLM
from transformers import AutoTokenizer
from transformers import BitsAndBytesConfig
from transformers import TrainingArguments
from util import constants
def finetune_causal_language_modeling(
pretrained_model_id: str,
dataset_name: str,
output_dir: str,
precision_mode: str = None,
lora_rank: int = 16,
lora_alpha: int = 32,
lora_dropout: float = 0.05,
warmup_steps: int = 10,
max_steps: int = 10,
learning_rate: float = 2e-4,
local_pretrained_model_id: str = None,
) -> None:
"""Finetunes causal language modelings."""
if precision_mode == constants.PRECISION_MODE_32:
model = AutoModelForCausalLM.from_pretrained(
local_pretrained_model_id
if local_pretrained_model_id
else pretrained_model_id,
torch_dtype=torch.float32,
device_map="auto",
)
elif precision_mode == constants.PRECISION_MODE_16:
model = AutoModelForCausalLM.from_pretrained(
local_pretrained_model_id
if local_pretrained_model_id
else pretrained_model_id,
torch_dtype=torch.bfloat16,
device_map="auto",
)
elif precision_mode == constants.PRECISION_MODE_8:
quantization_config = BitsAndBytesConfig(
load_in_8bit=True, int8_threshold=0
)
model = AutoModelForCausalLM.from_pretrained(
local_pretrained_model_id
if local_pretrained_model_id
else pretrained_model_id,
torch_dtype=torch.float16,
device_map="auto",
quantization_config=quantization_config,
)
else:
quantization_config = BitsAndBytesConfig(
load_in_4bit=True,
bnb_4bit_quant_type="nf4",
bnb_4bit_compute_dtype=torch.bfloat16,
)
model = AutoModelForCausalLM.from_pretrained(
local_pretrained_model_id
if local_pretrained_model_id
else pretrained_model_id,
device_map="auto",
torch_dtype=torch.bfloat16,
quantization_config=quantization_config,
)
tokenizer = AutoTokenizer.from_pretrained(
local_pretrained_model_id
if local_pretrained_model_id
else pretrained_model_id
)
if "llama" in pretrained_model_id:
tokenizer.pad_token = "[PAD]"
for param in model.parameters():
# Freezes the model - train adapters later.
param.requires_grad = False
if param.ndim == 1:
# Casts the small parameters (e.g. layernorm) to fp32 for stability.
param.data = param.data.to(torch.float32)
# Reduces the number of stored activations.
model.gradient_checkpointing_enable()
model.enable_input_require_grads()
class CastOutputToFloat(nn.Sequential):
def forward(self, x):
return super().forward(x).to(torch.float32)
model.lm_head = CastOutputToFloat(model.lm_head)
config = LoraConfig(
r=lora_rank,
lora_alpha=lora_alpha,
target_modules=["q_proj", "v_proj"],
lora_dropout=lora_dropout,
bias="none",
task_type="CAUSAL_LM",
)
model = get_peft_model(model, config)
model.print_trainable_parameters()
data = load_dataset(dataset_name)
data = data.map(
lambda samples: tokenizer(samples["quote"]),
batched=True,
)
trainer = transformers.Trainer(
model=model,
train_dataset=data["train"],
args=TrainingArguments(
per_device_train_batch_size=4,
gradient_accumulation_steps=4,
warmup_steps=warmup_steps,
max_steps=max_steps,
learning_rate=learning_rate,
fp16=True,
logging_steps=1,
output_dir=output_dir,
ddp_find_unused_parameters=False,
),
data_collator=transformers.DataCollatorForLanguageModeling(
tokenizer,
mlm=False,
),
)
# Silence the warnings. Please re-enable for inference!
model.config.use_cache = False
trainer.train()
model.save_pretrained(output_dir)
@@ -1,21 +0,0 @@
number_of_netty_threads=32
job_queue_size=1000
model_store=/home/model-server/model-store
workflow_store=/home/model-server/wf-store
default_response_timeout=1800
service_envelope=json
inference_address=http://0.0.0.0:7080
management_address=http://0.0.0.0:7081
metrics_address=http://0.0.0.0:7082
models={\
"peft_serving": {\
"1.0": {\
"defaultVersion": true,\
"marName": "peft_serving.mar",\
"minWorkers": 1,\
"maxWorkers": 1,\
"batchSize": 1\
}\
}\
}
@@ -1,107 +0,0 @@
# Dockerfile for PEFT Serving.
#
# To build:
# docker build -f model_oss/peft/dockerfile/serve.Dockerfile . -t ${YOUR_IMAGE_TAG}
#
# To push to gcr:
# docker tag ${YOUR_IMAGE_TAG} gcr.io/${YOUR_PROJECT}/${YOUR_IMAGE_TAG}
# docker push gcr.io/${YOUR_PROJECT}/${YOUR_IMAGE_TAG}
FROM pytorch/torchserve:0.7.0-gpu
USER root
ENV infer_port=7080
ENV mng_port=7081
ENV model_name="peft_serving"
ENV PATH="/home/model-server/:${PATH}"
RUN apt-get update && apt-get install -y --no-install-recommends \
curl \
wget \
vim \
git \
git-lfs
RUN git lfs install
# Install libraries.
ENV PIP_ROOT_USER_ACTION=ignore
RUN python3 -m pip install --upgrade pip
RUN pip install --upgrade torch==2.0.1
RUN pip install torchvision==0.15.2
RUN pip install tokenizers==0.13.3
RUN pip install accelerate==0.21.0
RUN pip install sentencepiece==0.1.99
RUN pip install grpcio-status==1.33.2
RUN pip install protobuf==3.19.6
RUN python3 -m pip install --no-cache-dir git+https://github.com/huggingface/peft.git
RUN pip install datasets==2.14.4
RUN pip install triton==2.0.0.dev20221120
RUN pip install xformers==0.0.20
RUN pip install google-cloud-storage==2.7.0
RUN pip install absl-py==1.4.0
RUN pip install scipy==1.10.1
RUN pip install evaluate==0.4.0
RUN pip install scikit-learn==1.2.2
RUN pip install loralib==0.1.1
RUN pip install bitsandbytes==0.39.0
RUN pip install trl==0.4.4
RUN pip install einops==0.6.1
# Install diffusers from source.
RUN git clone --depth 1 --branch v0.16.1 https://github.com/huggingface/diffusers.git
WORKDIR diffusers
RUN pip install -e .
WORKDIR /home/model-server
# Install transformers from source.
RUN git clone --depth 1 --branch v4.31.0 https://github.com/huggingface/transformers.git
# The patch is used to change the transformers loading model behavior:
# 1) For models on Huggingface hub: if the model has multiple shards, each shard
# will be downloaded separately and get deleted after loading to GPU.
# 2) For models on local disk: if a model bin file is actually a text file
# recording a GCS path, the model file will be downloaded and get deleted
# after loading to GPU.
COPY model_oss/peft/hf_transformers_lazy_download.patch /home/model-server/hf_transformers_lazy_download.patch
WORKDIR transformers
RUN git apply /home/model-server/hf_transformers_lazy_download.patch
RUN pip install -e .
WORKDIR /home/model-server
# Copy license.
RUN wget https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/main/LICENSE
# Copy model artifacts.
COPY model_oss/peft/handler.py /home/model-server/handler.py
COPY model_oss/peft/config.properties /home/model-server/config.properties
COPY model_oss/util/ /home/model-server/util/
ENV PYTHONPATH /home/model-server/
# Expose ports.
EXPOSE ${infer_port}
EXPOSE ${mng_port}
# Set environments.
ENV TASK "causal-language-modeling-lora"
ENV BASE_MODEL_ID "openlm-research/open_llama_7b"
ENV PRECISION_LOADING_MODE "float16"
ENV FINETUNED_LORA_MODEL_PATH ""
# Archive model artifacts and dependencies.
# Do not set --model-file and --serialized-file because model and checkpoint
# will be dynamically loaded in handler.py.
RUN torch-model-archiver \
--model-name=${model_name} \
--version=1.0 \
--handler=/home/model-server/handler.py \
--runtime=python3 \
--export-path=/home/model-server/model-store \
--archive-format=default \
--force
# Run Torchserve HTTP serve to respond to prediction requests.
CMD ["torchserve", "--start", \
"--ts-config", "/home/model-server/config.properties", \
"--models", "${model_name}=${model_name}.mar", \
"--model-store", "/home/model-server/model-store"]
@@ -1,111 +0,0 @@
# Dockerfile for PEFT Training.
#
# To build:
# docker build -f model_oss/peft/dockerfile/train.Dockerfile . -t ${YOUR_IMAGE_TAG}
#
# To push to gcr:
# docker tag ${YOUR_IMAGE_TAG} gcr.io/${YOUR_PROJECT}/${YOUR_IMAGE_TAG}
# docker push gcr.io/${YOUR_PROJECT}/${YOUR_IMAGE_TAG}
# Builds GPU docker image of PyTorch
# Uses multi-staged approach to reduce size
# Stage 1
# Use base conda image to reduce time
FROM continuumio/miniconda3:latest AS compile-image
# Specify py version
ENV PYTHON_VERSION=3.8
# Install apt libs - copied from https://github.com/huggingface/accelerate/blob/main/docker/accelerate-gpu/Dockerfile
RUN apt-get update && \
apt-get install -y curl git wget software-properties-common git-lfs && \
apt-get clean && \
rm -rf /var/lib/apt/lists*
# Install audio-related libraries
RUN apt-get update && \
apt install -y ffmpeg
RUN apt install -y libsndfile1-dev
RUN git lfs install
# Create our conda env - copied from https://github.com/huggingface/accelerate/blob/main/docker/accelerate-gpu/Dockerfile
RUN conda create --name peft python=${PYTHON_VERSION} ipython jupyter pip
RUN python3 -m pip install --no-cache-dir --upgrade pip
# Below is copied from https://github.com/huggingface/accelerate/blob/main/docker/accelerate-gpu/Dockerfile
# We don't install pytorch here yet since CUDA isn't available
# instead we use the direct torch wheel
ENV PATH /opt/conda/envs/peft/bin:$PATH
# Activate our bash shell
RUN chsh -s /bin/bash
SHELL ["/bin/bash", "-c"]
# Activate the conda env and install transformers + accelerate from source
RUN source activate peft
RUN python3 -m pip install --no-cache-dir git+https://github.com/huggingface/transformers
RUN python3 -m pip install --no-cache-dir git+https://github.com/huggingface/accelerate
RUN python3 -m pip install --no-cache-dir git+https://github.com/huggingface/peft#egg=peft[test]
RUN python3 -m pip install --no-cache-dir bitsandbytes
# Stage 2
FROM nvidia/cuda:11.2.2-cudnn8-devel-ubuntu20.04 AS build-image
COPY --from=compile-image /opt/conda /opt/conda
ENV PATH /opt/conda/bin:$PATH
# Install apt libs
RUN apt-get update && \
apt-get install -y curl git wget vim && \
apt-get clean && \
rm -rf /var/lib/apt/lists*
# Copy license.
RUN wget https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/main/LICENSE
RUN echo "source activate peft" >> ~/.profile
# Install libraries.
RUN pip install --upgrade torch==2.0.1
RUN pip install torchvision==0.15.2
RUN pip install git+https://github.com/huggingface/transformers@de9255de27abfcae4a1f816b904915f0b1e23cd9
RUN pip install transformers -U
RUN pip install accelerate==0.21.0
RUN pip install sentencepiece==0.1.99
RUN pip install grpcio-status==1.33.2
RUN pip install protobuf==3.19.6
RUN python3 -m pip install --no-cache-dir git+https://github.com/huggingface/peft.git
RUN pip install datasets==2.9.0
RUN pip install triton==2.0.0.dev20221120
RUN pip install xformers==0.0.20
RUN pip install Jinja2==3.1.2
RUN pip install ftfy==6.1.1
RUN pip install cloudml-hypertune==0.1.0.dev6
RUN pip install tensorboard==2.12.0
RUN pip install scipy==1.10.1
RUN pip install evaluate==0.4.0
RUN pip install scikit-learn==1.2.2
RUN pip install loralib==0.1.1
RUN pip install bitsandbytes==0.39.0
RUN pip install trl==0.4.4
RUN pip install einops==0.6.1
RUN pip install google-cloud-storage==2.7.0
RUN git clone --depth 1 --branch v0.16.1 https://github.com/huggingface/diffusers.git
WORKDIR diffusers
RUN pip install -e .
# Switch to diffusers examples folder.
WORKDIR examples
# NOTE: use 'sed' to modify train_text_to_image_lora.py to
# fix the bug for accelerator.
RUN sed -i \
"s#logging_dir=logging_dir#project_dir=logging_dir#g" \
text_to_image/train_text_to_image_lora.py
# Config accelerate.
RUN mkdir -p ./vertex_vision_model_garden_peft/
COPY model_oss/peft/train.sh ./vertex_vision_model_garden_peft/train.sh
COPY model_oss/peft/*.py ./vertex_vision_model_garden_peft/
COPY model_oss/util /diffusers/examples/util
ENV PYTHONPATH /diffusers/examples/
# Generate accelerate config at the beginning of docker run.
ENTRYPOINT ["python3", "vertex_vision_model_garden_peft/main.py"]
@@ -1,250 +0,0 @@
"""Custom handler for huggingface/peft models."""
# pylint: disable=g-importing-member
# pylint: disable=logging-fstring-interpolation
import logging
import os
from typing import Any, List
from absl import logging
from diffusers import DPMSolverMultistepScheduler
from diffusers import StableDiffusionPipeline
from peft import PeftModel
from PIL import Image
import torch
import transformers
from transformers import AutoModelForCausalLM
from transformers import AutoModelForSequenceClassification
from transformers import AutoTokenizer
from transformers import BitsAndBytesConfig
from ts.torch_handler.base_handler import BaseHandler
from util import constants
from util import fileutils
from util import image_format_converter
# Tasks
TEXT_TO_IMAGE_LORA = "text-to-image-lora"
SEQUENCE_CLASSIFICATION_LORA = "sequence-classification-lora"
CAUSAL_LANGUAGE_MODELING_LORA = "causal-language-modeling-lora"
INSTRUCT_LORA = "instruct-lora"
# Inference parameters.
_NUM_INFERENCE_STEPS = 25
_MAX_LENGTH_DEFAULT = 200
_TOP_K_DEFAULT = 10
class PeftHandler(BaseHandler):
"""Custom handler for Peft models."""
def initialize(self, context: Any):
"""Initializes the handler."""
logging.info("Start to initialize the PEFT handler.")
properties = context.system_properties
self.map_location = (
"cuda"
if torch.cuda.is_available() and properties.get("gpu_id") is not None
else "cpu"
)
self.device = torch.device(
self.map_location + ":" + str(properties.get("gpu_id"))
if torch.cuda.is_available() and properties.get("gpu_id") is not None
else self.map_location
)
self.manifest = context.manifest
self.precision_mode = os.environ.get(
"PRECISION_LOADING_MODE", constants.PRECISION_MODE_16
)
self.task = os.environ.get("TASK", CAUSAL_LANGUAGE_MODELING_LORA)
self.base_model_id = os.environ.get(
"BASE_MODEL_ID", "openlm-research/open_llama_7b"
)
if fileutils.is_gcs_path(self.base_model_id):
fileutils.download_gcs_dir_to_local(
self.base_model_id,
constants.LOCAL_BASE_MODEL_DIR,
skip_hf_model_bin=True,
)
self.base_model_id = constants.LOCAL_BASE_MODEL_DIR
self.finetuned_lora_model_path = os.environ.get(
"FINETUNED_LORA_MODEL_PATH", ""
)
if fileutils.is_gcs_path(self.finetuned_lora_model_path):
fileutils.download_gcs_dir_to_local(
self.finetuned_lora_model_path, constants.LOCAL_MODEL_DIR
)
self.finetuned_lora_model_path = constants.LOCAL_MODEL_DIR
logging.info(
f"Using task:{self.task}, base model:{self.base_model_id}, lora model:"
f" {self.finetuned_lora_model_path}, and precision"
f" {self.precision_mode}."
)
self.pipeline = None
self.model = None
self.tokenizer = None
if self.task == TEXT_TO_IMAGE_LORA:
pipeline = StableDiffusionPipeline.from_pretrained(
self.base_model_id, torch_dtype=torch.float16
)
logging.debug("Initialized the base model for text to image.")
pipeline.scheduler = DPMSolverMultistepScheduler.from_config(
pipeline.scheduler.config
)
logging.debug("Initialized the scheduler for text to image.")
if self.finetuned_lora_model_path:
pipeline.unet.load_attn_procs(self.finetuned_lora_model_path)
logging.debug("Initialized the LoRA model for text to image.")
# This is to reduce GPU memory requirements.
pipeline.enable_xformers_memory_efficient_attention()
pipeline = pipeline.to(self.map_location)
# Reduces memory footprint.
pipeline.enable_attention_slicing()
self.pipeline = pipeline
logging.info("Initialized the text to image pipelines.")
elif self.task == SEQUENCE_CLASSIFICATION_LORA:
tokenizer = AutoTokenizer.from_pretrained(self.base_model_id)
logging.debug("Initialized the tokenizer for sequence classification.")
model = AutoModelForSequenceClassification.from_pretrained(
self.base_model_id, torch_dtype=torch.float16
)
logging.debug("Initialized the base model for sequence classification.")
if self.finetuned_lora_model_path:
model = PeftModel.from_pretrained(model, self.finetuned_lora_model_path)
logging.debug("Initialized the LoRA model for sequence classification.")
model.to(self.map_location)
self.model = model
self.tokenizer = tokenizer
elif (
self.task == CAUSAL_LANGUAGE_MODELING_LORA or self.task == INSTRUCT_LORA
):
tokenizer = AutoTokenizer.from_pretrained(self.base_model_id)
logging.debug("Initialized the tokenizer.")
if self.task == CAUSAL_LANGUAGE_MODELING_LORA:
if self.precision_mode == constants.PRECISION_MODE_32:
model = AutoModelForCausalLM.from_pretrained(
self.base_model_id,
return_dict=True,
torch_dtype=torch.float32,
device_map="auto",
)
elif self.precision_mode == constants.PRECISION_MODE_16:
model = AutoModelForCausalLM.from_pretrained(
self.base_model_id,
return_dict=True,
torch_dtype=torch.bfloat16,
device_map="auto",
)
elif self.precision_mode == constants.PRECISION_MODE_8:
quantization_config = BitsAndBytesConfig(
load_in_8bit=True, int8_threshold=0
)
model = AutoModelForCausalLM.from_pretrained(
self.base_model_id,
return_dict=True,
torch_dtype=torch.float16,
device_map="auto",
quantization_config=quantization_config,
)
else:
quantization_config = BitsAndBytesConfig(
load_in_4bit=True,
bnb_4bit_quant_type="nf4",
bnb_4bit_compute_dtype=torch.bfloat16,
)
model = AutoModelForCausalLM.from_pretrained(
self.base_model_id,
return_dict=True,
device_map="auto",
torch_dtype=torch.bfloat16,
quantization_config=quantization_config,
)
else:
model = AutoModelForCausalLM.from_pretrained(
self.base_model_id,
return_dict=True,
torch_dtype=torch.bfloat16,
trust_remote_code=True,
device_map="auto",
)
logging.debug("Initialized the base model.")
if self.finetuned_lora_model_path:
model = PeftModel.from_pretrained(model, self.finetuned_lora_model_path)
logging.debug("Initialized the LoRA model.")
pipeline = transformers.pipeline(
"text-generation",
model=model,
tokenizer=tokenizer,
)
self.tokenizer = tokenizer
self.pipeline = pipeline
else:
raise ValueError(f"Invalid TASK: {self.task}")
self.initialized = True
logging.info("The PEFT handler was initialized.")
def preprocess(self, data: Any) -> Any:
"""Preprocesses input data."""
# Assumes that the parameters are same in one request. We parse the
# parameters from the first instance for all instances in one request.
max_length = _MAX_LENGTH_DEFAULT
top_k = _TOP_K_DEFAULT
prompts = [item["prompt"] for item in data]
if "max_length" in data[0]:
max_length = data[0]["max_length"]
if "top_k" in data[0]:
top_k = data[0]["top_k"]
return prompts, max_length, top_k
def inference(self, data: Any, *args, **kwargs) -> List[Image.Image]:
"""Runs the inference."""
prompts, max_length, top_k = data
logging.debug(
f"Inference prompts={prompts}, max_length={max_length}, top_k={top_k}."
)
if self.task == TEXT_TO_IMAGE_LORA:
predicted_results = self.pipeline(
prompt=prompts, num_inference_steps=_NUM_INFERENCE_STEPS
).images
elif self.task == SEQUENCE_CLASSIFICATION_LORA:
encoded_input = self.tokenizer(prompts, return_tensors="pt")
encoded_input.to(self.map_location)
with torch.no_grad():
outputs = self.model(**encoded_input)
predictions = outputs.logits.argmax(dim=-1)
predicted_results = predictions.tolist()
elif (
self.task == CAUSAL_LANGUAGE_MODELING_LORA or self.task == INSTRUCT_LORA
):
predicted_results = self.pipeline(
prompts,
max_length=max_length,
do_sample=True,
top_k=top_k,
num_return_sequences=1,
eos_token_id=self.tokenizer.eos_token_id,
)
else:
raise ValueError(f"Invalid TASK: {self.task}")
return predicted_results
def postprocess(self, data: Any) -> List[str]:
"""Postprocesses output data."""
if self.task == TEXT_TO_IMAGE_LORA:
# Converts the images to base64 string.
outputs = [
image_format_converter.image_to_base64(image) for image in data
]
else:
outputs = data
return outputs
# pylint: enable=logging-fstring-interpolation
@@ -1,131 +0,0 @@
diff --git a/src/transformers/modeling_utils.py b/src/transformers/modeling_utils.py
index 45459ed..32527f4 100644
--- a/src/transformers/modeling_utils.py
+++ b/src/transformers/modeling_utils.py
@@ -32,6 +32,8 @@ import torch
from packaging import version
from torch import Tensor, nn
from torch.nn import CrossEntropyLoss
+from huggingface_hub import hf_hub_download
+from google.cloud import storage
from .activations import get_activation
from .configuration_utils import PretrainedConfig
@@ -442,6 +444,29 @@ def load_state_dict(checkpoint_file: Union[str, os.PathLike]):
"""
Reads a PyTorch checkpoint file, returning properly formatted errors if they arise.
"""
+ delete_download = False
+ tmp_dir = "/tmp/model"
+ os.makedirs(tmp_dir, exist_ok=True)
+ if isinstance(checkpoint_file, dict):
+ # Download model file from huggingface
+ print(f"==> Download model from HF: {checkpoint_file}")
+ checkpoint_file = hf_hub_download(
+ local_dir=tmp_dir, local_dir_use_symlinks=False, force_download=True, resume_download=True, **checkpoint_file)
+ delete_download = True
+ else:
+ with open(checkpoint_file, "rb") as f:
+ is_gcs_file = (f.read(2) == b"gs")
+ if is_gcs_file:
+ # Download model file from GCS
+ with open(checkpoint_file, "r") as f:
+ gcs_file = f.read()
+ checkpoint_file = os.path.join(tmp_dir, gcs_file.split("/")[-1])
+ print(f"==> Download model from GCS: {gcs_file} to: {checkpoint_file}")
+ client = storage.Client()
+ with open(checkpoint_file, 'wb') as f:
+ client.download_blob_to_file(gcs_file, f)
+ delete_download = True
+
if checkpoint_file.endswith(".safetensors") and is_safetensors_available():
# Check format of the archive
with safe_open(checkpoint_file, framework="pt") as f:
@@ -455,9 +480,9 @@ def load_state_dict(checkpoint_file: Union[str, os.PathLike]):
raise NotImplementedError(
f"Conversion from a {metadata['format']} safetensors archive to PyTorch is not implemented yet."
)
- return safe_load_file(checkpoint_file)
+ state_dict = safe_load_file(checkpoint_file)
try:
- return torch.load(checkpoint_file, map_location="cpu")
+ state_dict = torch.load(checkpoint_file, map_location="cpu")
except Exception as e:
try:
with open(checkpoint_file) as f:
@@ -478,6 +503,10 @@ def load_state_dict(checkpoint_file: Union[str, os.PathLike]):
f"at '{checkpoint_file}'. "
"If you tried to load a PyTorch model from a TF 2.0 checkpoint, please set from_tf=True."
)
+ if delete_download:
+ print(f"==> Delete downloaded model: {checkpoint_file}")
+ os.remove(checkpoint_file)
+ return state_dict
def set_initialized_submodules(model, state_dict_keys):
@@ -3179,7 +3208,10 @@ class PreTrainedModel(nn.Module, ModuleUtilsMixin, GenerationMixin, PushToHubMix
return mismatched_keys
if resolved_archive_file is not None:
- folder = os.path.sep.join(resolved_archive_file[0].split(os.path.sep)[:-1])
+ if isinstance(resolved_archive_file, str):
+ folder = os.path.sep.join(resolved_archive_file[0].split(os.path.sep)[:-1])
+ else:
+ folder = None
else:
folder = None
if device_map is not None and is_safetensors:
diff --git a/src/transformers/utils/hub.py b/src/transformers/utils/hub.py
index ffed743..4b15770 100644
--- a/src/transformers/utils/hub.py
+++ b/src/transformers/utils/hub.py
@@ -414,20 +414,34 @@ def cached_file(
user_agent = http_user_agent(user_agent)
try:
# Load from URL or cache if already cached
- resolved_file = hf_hub_download(
- path_or_repo_id,
- filename,
- subfolder=None if len(subfolder) == 0 else subfolder,
- repo_type=repo_type,
- revision=revision,
- cache_dir=cache_dir,
- user_agent=user_agent,
- force_download=force_download,
- proxies=proxies,
- resume_download=resume_download,
- use_auth_token=use_auth_token,
- local_files_only=local_files_only,
- )
+ if filename.endswith(".bin"):
+ # NOTE: To save disk we do not download bin file eagerly. Do not support safetensors.
+ resolved_file = dict(
+ repo_id=path_or_repo_id,
+ filename=filename,
+ subfolder=None if len(subfolder) == 0 else subfolder,
+ repo_type=repo_type,
+ revision=revision,
+ user_agent=user_agent,
+ proxies=proxies,
+ use_auth_token=use_auth_token,
+ )
+ print(f"--> Apply lazy download to bin file: {resolved_file}")
+ else:
+ resolved_file = hf_hub_download(
+ path_or_repo_id,
+ filename,
+ subfolder=None if len(subfolder) == 0 else subfolder,
+ repo_type=repo_type,
+ revision=revision,
+ cache_dir=cache_dir,
+ user_agent=user_agent,
+ force_download=force_download,
+ proxies=proxies,
+ resume_download=resume_download,
+ use_auth_token=use_auth_token,
+ local_files_only=local_files_only,
+ )
except RepositoryNotFoundError:
raise EnvironmentError(
@@ -1,97 +0,0 @@
"""Instruct/Chat with LoRA models."""
# pylint: disable=g-importing-member
from datasets import load_dataset
from peft import LoraConfig
import torch
from transformers import AutoModelForCausalLM
from transformers import AutoTokenizer
from transformers import BitsAndBytesConfig
from transformers import TrainingArguments
from trl import SFTTrainer
def finetune_instruct(
pretrained_model_id: str,
dataset_name: str,
output_dir: str,
lora_rank: int = 64,
lora_alpha: int = 16,
lora_dropout: float = 0.1,
warmup_ratio: int = 0.03,
max_steps: int = 10,
max_seq_length: int = 512,
learning_rate: float = 2e-4,
) -> None:
"""Finetunes instruct."""
dataset = load_dataset(dataset_name, split="train")
bnb_config = BitsAndBytesConfig(
load_in_4bit=True,
bnb_4bit_quant_type="nf4",
bnb_4bit_compute_dtype=torch.float16,
)
model = AutoModelForCausalLM.from_pretrained(
pretrained_model_id,
quantization_config=bnb_config,
trust_remote_code=True,
)
model.config.use_cache = False
tokenizer = AutoTokenizer.from_pretrained(
pretrained_model_id, trust_remote_code=True
)
tokenizer.pad_token = tokenizer.eos_token
peft_config = LoraConfig(
lora_alpha=lora_alpha,
lora_dropout=lora_dropout,
r=lora_rank,
bias="none",
task_type="CAUSAL_LM",
target_modules=[
"query_key_value",
"dense",
"dense_h_to_4h",
"dense_4h_to_h",
],
)
per_device_train_batch_size = 4
gradient_accumulation_steps = 4
optim = "paged_adamw_32bit"
save_steps = 10
logging_steps = 10
max_grad_norm = 0.3
lr_scheduler_type = "constant"
training_arguments = TrainingArguments(
output_dir=output_dir,
per_device_train_batch_size=per_device_train_batch_size,
gradient_accumulation_steps=gradient_accumulation_steps,
optim=optim,
save_steps=save_steps,
logging_steps=logging_steps,
learning_rate=learning_rate,
fp16=True,
max_grad_norm=max_grad_norm,
max_steps=max_steps,
warmup_ratio=warmup_ratio,
group_by_length=True,
lr_scheduler_type=lr_scheduler_type,
)
trainer = SFTTrainer(
model=model,
train_dataset=dataset,
peft_config=peft_config,
dataset_text_field="text",
max_seq_length=max_seq_length,
tokenizer=tokenizer,
args=training_arguments,
)
for name, module in trainer.model.named_modules():
if "norm" in name:
module = module.to(torch.float32)
trainer.train()
@@ -1,177 +0,0 @@
"""Main function to start PEFT finetuning."""
import subprocess
from absl import app
from absl import flags
from absl import logging
from peft import causal_language_modeling_lora
from peft import instruct_lora
from peft import sequence_classification_lora
from util import constants
from util import fileutils
_TASK = flags.DEFINE_string(
'task',
constants.CAUSAL_LANGUAGE_MODELING_LORA,
'The supported PEFT tasks.',
)
_PRETRAINED_MODEL_ID = flags.DEFINE_string(
'pretrained_model_id',
None,
'The pretrained model id. Supported models can be causal language modeling'
' models from https://github.com/huggingface/peft/tree/main.',
required=True,
)
_DATASET_NAME = flags.DEFINE_string(
'dataset_name',
None,
'The dataset name in huggingface.',
required=True,
)
_OUTPUT_DIR = flags.DEFINE_string(
'output_dir',
None,
'The output directory.',
required=True,
)
_PRECISION_MODE = flags.DEFINE_string(
'precision_mode',
constants.PRECISION_MODE_16,
'Supported finetuning precision_modes are `{}` and `{}`.'.format(
constants.PRECISION_MODE_8, constants.PRECISION_MODE_16
),
)
_LORA_RANK = flags.DEFINE_integer(
'lora_rank',
16,
'The rank of the update matrices, expressed in int. Lower rank results in'
' smaller update matrices with fewer trainable parameters, referring to'
' https://huggingface.co/docs/peft/conceptual_guides/lora.',
)
_LORA_ALPHA = flags.DEFINE_integer(
'lora_alpha',
32,
'LoRA scaling factor, referring to'
' https://huggingface.co/docs/peft/conceptual_guides/lora.',
)
_LORA_DROPOUT = flags.DEFINE_float(
'lora_dropout',
0.05,
'dropout probability of the LoRA layers, referring to'
' https://huggingface.co/docs/peft/task_guides/token-classification-lora.',
)
_WARMUP_STEPS = flags.DEFINE_integer(
'warmup_steps',
10,
'Number of steps for the warmup in the learning rate scheduler.',
)
_WARMUP_RATIO = flags.DEFINE_float(
'warmup_ratio',
0.03,
'The warmup ratio in the learning rate scheduler.',
)
_MAX_STEPS = flags.DEFINE_integer(
'max_steps',
10,
'Total number of training steps.',
)
_MAX_SEQ_LENGTH = flags.DEFINE_integer(
'max_seq_length',
512,
'The maximum sequence length.',
)
_NUM_EPOCHS = flags.DEFINE_integer(
'num_epochs',
20,
'The number of training epochs.',
)
_BATCH_SIZE = flags.DEFINE_integer(
'batch_size',
32,
'The batch size.',
)
_LEARNING_RATE = flags.DEFINE_float(
'learning_rate',
2e-4,
'The learning rate after the potential warmup period.',
)
def main(_) -> None:
task = _TASK.value
pretrained_model_id = _PRETRAINED_MODEL_ID.value
local_pretrained_model_id = None
if pretrained_model_id.startswith(constants.GCS_URI_PREFIX):
logging.info(
'Start to copy pretrained models locally: %s.', pretrained_model_id
)
fileutils.download_gcs_dir_to_local(
pretrained_model_id, constants.LOCAL_BASE_MODEL_DIR
)
local_pretrained_model_id = constants.LOCAL_BASE_MODEL_DIR
logging.info(
'Finished copying pretrained models locally to: %s.',
local_pretrained_model_id,
)
if task == constants.TEXT_TO_IMAGE_LORA:
subprocess.run(['/bin/bash', 'train.sh'], check=True)
elif task == constants.SEQUENCE_CLASSIFICATION_LORA:
sequence_classification_lora.finetune_sequence_classification(
pretrained_model_id=pretrained_model_id,
dataset_name=_DATASET_NAME.value,
output_dir=_OUTPUT_DIR.value,
lora_rank=_LORA_RANK.value,
lora_alpha=_LORA_ALPHA.value,
lora_dropout=_LORA_DROPOUT.value,
num_epochs=_NUM_EPOCHS.value,
batch_size=_BATCH_SIZE.value,
learning_rate=_LEARNING_RATE.value,
)
elif task == constants.CAUSAL_LANGUAGE_MODELING_LORA:
causal_language_modeling_lora.finetune_causal_language_modeling(
pretrained_model_id=pretrained_model_id,
dataset_name=_DATASET_NAME.value,
output_dir=_OUTPUT_DIR.value,
precision_mode=_PRECISION_MODE.value,
lora_rank=_LORA_RANK.value,
lora_alpha=_LORA_ALPHA.value,
lora_dropout=_LORA_DROPOUT.value,
warmup_steps=_WARMUP_STEPS.value,
max_steps=_MAX_STEPS.value,
learning_rate=_LEARNING_RATE.value,
local_pretrained_model_id=local_pretrained_model_id,
)
elif task == constants.INSTRUCT_LORA:
instruct_lora.finetune_instruct(
pretrained_model_id=pretrained_model_id,
dataset_name=_DATASET_NAME.value,
output_dir=_OUTPUT_DIR.value,
lora_rank=_LORA_RANK.value,
lora_alpha=_LORA_ALPHA.value,
lora_dropout=_LORA_DROPOUT.value,
warmup_ratio=_WARMUP_RATIO.value,
max_steps=_MAX_STEPS.value,
max_seq_length=_MAX_SEQ_LENGTH.value,
learning_rate=_LEARNING_RATE.value,
)
else:
raise ValueError('The task {} is not supported.'.format(task))
if __name__ == '__main__':
app.run(main)
@@ -1,133 +0,0 @@
"""Sequence classification with LoRA models."""
# pylint: disable=g-importing-member
from datasets import load_dataset
import evaluate
from peft import get_peft_model
from peft import LoraConfig
import torch
from torch.optim import AdamW
from torch.utils.data import DataLoader
from tqdm import tqdm
from transformers import AutoModelForSequenceClassification
from transformers import AutoTokenizer
from transformers import get_linear_schedule_with_warmup
def finetune_sequence_classification(
pretrained_model_id: str,
dataset_name: str,
output_dir: str,
lora_rank: int = 8,
lora_alpha: int = 16,
lora_dropout: float = 0.1,
num_epochs: int = 20,
batch_size: int = 32,
learning_rate: float = 3e-4,
) -> None:
"""Finetunes sequence classification."""
task = "mrpc"
device = "cuda"
peft_config = LoraConfig(
task_type="SEQ_CLS",
inference_mode=False,
r=lora_rank,
lora_alpha=lora_alpha,
lora_dropout=lora_dropout,
)
if any(k in pretrained_model_id for k in ("gpt", "opt", "bloom")):
padding_side = "left"
else:
padding_side = "right"
tokenizer = AutoTokenizer.from_pretrained(
pretrained_model_id, padding_side=padding_side
)
if getattr(tokenizer, "pad_token_id") is None:
tokenizer.pad_token_id = tokenizer.eos_token_id
datasets = load_dataset(dataset_name, task)
metric = evaluate.load(dataset_name, task)
def tokenize_function(examples):
# max_length=None => use the model max length (it's actually the default)
outputs = tokenizer(
examples["sentence1"],
examples["sentence2"],
truncation=True,
max_length=None,
)
return outputs
tokenized_datasets = datasets.map(
tokenize_function,
batched=True,
remove_columns=["idx", "sentence1", "sentence2"],
)
# We also rename the 'label' column to 'labels' which is the expected name for
# labels by the models of the transformers library.
tokenized_datasets = tokenized_datasets.rename_column("label", "labels")
def collate_fn(examples):
return tokenizer.pad(examples, padding="longest", return_tensors="pt")
# Instantiate dataloaders.
train_dataloader = DataLoader(
tokenized_datasets["train"],
shuffle=True,
collate_fn=collate_fn,
batch_size=batch_size,
)
eval_dataloader = DataLoader(
tokenized_datasets["validation"],
shuffle=False,
collate_fn=collate_fn,
batch_size=batch_size,
)
model = AutoModelForSequenceClassification.from_pretrained(
pretrained_model_id, return_dict=True
)
model = get_peft_model(model, peft_config)
model.print_trainable_parameters()
optimizer = AdamW(params=model.parameters(), lr=learning_rate)
# Instantiate scheduler
lr_scheduler = get_linear_schedule_with_warmup(
optimizer=optimizer,
num_warmup_steps=0.06 * (len(train_dataloader) * num_epochs),
num_training_steps=(len(train_dataloader) * num_epochs),
)
model.to(device)
for epoch in range(num_epochs):
model.train()
for _, batch in enumerate(tqdm(train_dataloader)):
batch.to(device)
outputs = model(**batch)
loss = outputs.loss
loss.backward()
optimizer.step()
lr_scheduler.step()
optimizer.zero_grad()
model.eval()
for _, batch in enumerate(tqdm(eval_dataloader)):
batch.to(device)
with torch.no_grad():
outputs = model(**batch)
predictions = outputs.logits.argmax(dim=-1)
references = batch["labels"]
metric.add_batch(
predictions=predictions,
references=references,
)
eval_metric = metric.compute()
print(f"epoch {epoch}:", eval_metric)
model.save_pretrained(output_dir)
@@ -1,6 +0,0 @@
#!/bin/bash
# Setup accelerate config before running trainer.
python -c "from accelerate.utils import write_basic_config; write_basic_config(mixed_precision='fp16')"
accelerate launch "$@"
@@ -1,115 +0,0 @@
FROM pytorch/torchserve:0.7.1-gpu
USER root
ENV infer_port=7080
ENV mng_port=7081
ENV model_name="pic2word"
ENV PATH="/home/model-server/:${PATH}"
# Copy license.
RUN apt-get update && apt-get install -y --no-install-recommends \
wget
RUN wget https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/main/LICENSE
# Install dependencies.
ENV PIP_ROOT_USER_ACTION=ignore
RUN python3 -m pip install --upgrade pip
RUN pip install google-cloud-storage==2.7.0
RUN pip install open_clip_torch==2.20.0
RUN pip install numpy==1.22.0
RUN pip install scikit-image==0.21.0
RUN pip install scikit-learn==1.0.2
RUN pip install torch==2.0.0
RUN pip install torchvision==0.15.2
RUN pip install tensorboard==2.13.0
RUN pip install ase==3.21.1
RUN pip install braceexpand==0.1.7
RUN pip install cached-property==1.5.2
RUN pip install configparser==5.0.2
RUN pip install cycler==0.10.0
RUN pip install decorator==4.4.2
RUN pip install docker-pycreds==0.4.0
RUN pip install gitdb==4.0.7
RUN pip install gitpython==3.1.30
RUN pip install googledrivedownloader==0.4
RUN pip install h5py==3.1.0
RUN pip install isodate==0.6.0
RUN pip install jinja2==3.0.1
RUN pip install kiwisolver==1.3.1
RUN pip install littleutils==0.2.2
RUN pip install llvmlite==0.36.0
RUN pip install markupsafe==2.0.1
RUN pip install matplotlib==3.3.4
RUN pip install networkx==2.5.1
RUN pip install numba==0.53.1
RUN pip install ogb==1.3.1
RUN pip install outdated==0.2.1
RUN pip install pathtools==0.1.2
RUN pip install promise==2.3
RUN pip install psutil==5.8.0
RUN pip install pyarrow==4.0.0
RUN pip install pyparsing==2.4.7
RUN pip install python-louvain==0.15
RUN pip install pyyaml==5.4.1
RUN pip install rdflib==5.0.0
RUN pip install sentry-sdk==1.14.0
RUN pip install shortuuid==1.0.1
RUN pip install sklearn==0.0
RUN pip install smmap==4.0.0
RUN pip install subprocess32==3.5.4
RUN pip install torch-geometric==1.7.0
RUN pip install wandb==0.10.30
RUN pip install wilds==1.1.0
RUN pip install ftfy==6.1.1
RUN pip install regex==2023.6.3
RUN pip install webdataset==0.2.48
RUN pip install requests==2.31.0
RUN pip install hydra-core==1.3.2
RUN pip install omegaconf==2.3.0
RUN pip install fairseq==0.10.0
RUN pip install bitarray==2.7.6
# Get 'composed_image_retrieval' repository from github.
RUN git clone https://github.com/google-research/composed_image_retrieval
# Set workdir to composed_image_retrieval.
WORKDIR ./composed_image_retrieval
# Using git reset command to pin it down to a specific version.
RUN git reset --hard 8c053297c2fae9cd17ddcded48445a4f47208dbd
# Fix issue introduced by installing composed_image_retrieval
# https://github.com/huggingface/transformers/issues/8638#issuecomment-790772391
RUN pip uninstall dataclasses -y
# Copy model artifacts.
COPY model_oss/pic2word/handler.py /home/model-server/handler.py
# Create torchserve configuration file.
RUN echo \
"default_response_timeout=1800\n" \
"service_envelope=json\n" \
"inference_address=http://0.0.0.0:${infer_port}\n" \
"management_address=http://0.0.0.0:${mng_port}" >> /home/model-server/config.properties
# Expose ports.
EXPOSE ${infer_port}
EXPOSE ${mng_port}
# Archive model artifacts and dependencies.
# Do not set --model-file and --serialized-file because model and checkpoint
# will be dynamically loaded in handler.py.
RUN torch-model-archiver \
--model-name=${model_name} \
--version=1.0 \
--handler=/home/model-server/handler.py \
--runtime=python3 \
--export-path=/home/model-server/model-store \
--archive-format=default \
--force
# Run Torchserve HTTP serve to respond to prediction requests.
CMD ["torchserve", "--start", \
"--ts-config", "/home/model-server/config.properties", \
"--models", "${model_name}=${model_name}.mar", \
"--model-store", "/home/model-server/model-store"]
@@ -1,167 +0,0 @@
"""Custom handler for Pic2Word."""
from argparse import Namespace # pylint: disable=g-importing-member
import os
from typing import Any
from absl import logging
from data import CustomFolder
from eval_utils import visualize_results
from model.clip import load
from model.model import convert_weights
from model.model import IM2TEXT
from params import get_project_root
import torch
from torch.utils.data import DataLoader
from ts.torch_handler.base_handler import BaseHandler
from util import fileutils
# The COCO dataset is stored in a publicly accessible bucket.
_COCO_STORAGE_DIR = "gs://pic2word-bucket/data/coco/"
_COCO_LOCAL_DIR = "/home/model-server/composed_image_retrieval/data/coco/"
_COCO_VAL2017_PATH = "coco/val2017"
_COCO_DATASET_NAME = "coco"
_MODEL_NAME = "ViT-L/14"
_LOCAL_QUERY_PATH = "./query/"
_IMAGE_OUTPUT_LOCAL_DIR = "demo_out/images"
_OUTPUT_LOCAL_DIR = "/demo_out/"
_DATA_DIR = "data"
_CHECKPOINT_DIR = "checkpoint/pic2word_model.pt"
_REQUEST_PROMPTS = "prompts"
_REQUEST_OUTPUT_STORAGE_DIR = "output_storage_dir"
_REQUEST_IMAGE_PATH = "image_path"
_REQUEST_IMAGE_FILE_NAME = "image_file_name"
_RESPONSE_MSG = "Successfully retrieved images."
class ModelHandler(BaseHandler):
"""A custom model handler implementation."""
def __init__(self):
self.initialized = False
self.gpu = 0
self.model = None
self.dataloader = None
self.prompt = None
self.output_storage_dir = None
def initialize(self, context: Any):
"""Initialize."""
logging.info("Initializing pic2word.")
# Download COCO dataset. The model looks for this folder specifically
# during image retrieval to generate a response for each request.
# This is a publicly accessible bucket.
fileutils.download_gcs_dir_to_local(
_COCO_STORAGE_DIR,
_COCO_LOCAL_DIR,
)
# Load the model.
self.initialized = True
torch.cuda.set_device(self.gpu)
model, _, preprocess_val = load(_MODEL_NAME, jit=False)
img2text = IM2TEXT(
embed_dim=model.embed_dim,
output_dim=model.token_embedding.weight.shape[1],
)
model.cuda(self.gpu)
img2text.cuda(self.gpu)
convert_weights(model)
convert_weights(img2text)
self.model = model
self.img2text = img2text
# Load the dataset
logging.info("Loading dataset.")
root_project = os.path.join(get_project_root(), _DATA_DIR)
dataset = CustomFolder(
os.path.join(root_project, _COCO_VAL2017_PATH), transform=preprocess_val
)
# Initialize the dataloader. This is used to create the pickle file from
# the dataset.
dataloader = DataLoader(
dataset,
batch_size=64,
shuffle=False,
num_workers=1,
pin_memory=True,
drop_last=False,
)
self.dataloader = dataloader
logging.info("Finished initializing Pic2Word server.")
def preprocess(self, data: Any) -> str:
"""Preprocess input data."""
logging.info("Preprocessing Pic2Word inference request.")
query = data[0]
self.output_storage_dir = query[_REQUEST_OUTPUT_STORAGE_DIR]
prompts = query[_REQUEST_PROMPTS]
prompts = prompts.split(",")
self.prompt = prompts
image_path = query[_REQUEST_IMAGE_PATH]
# The query image is only supported via GCS bucket upload.
fileutils.download_gcs_dir_to_local(image_path, _LOCAL_QUERY_PATH)
image_file_name = query[_REQUEST_IMAGE_FILE_NAME]
query_file = f"./query/{image_file_name}"
logging.info("Setting model args.")
args = {
"openai-pretrained": True,
"resume": _CHECKPOINT_DIR,
"retrieval_data": _COCO_DATASET_NAME,
"query_file": query_file,
"demo_out": _OUTPUT_LOCAL_DIR,
"prompts": prompts,
"distributed": False,
"dp": False,
"gpu": 0,
"model": _MODEL_NAME,
"world_size": 1,
}
model_input = Namespace(**args)
logging.info("Finished preprocessing Pic2Word inference request.")
return model_input
def inference(self, model_input: Any):
"""Runs inference."""
logging.info("Running model-inference.")
visualize_results(
model=self.model,
img2text=self.img2text,
args=model_input,
prompt=self.prompt,
dataloader=self.dataloader,
)
def postprocess(self):
"""Upload the output images to the bucket."""
logging.info("Running request postprocess.")
fileutils.upload_local_dir_to_gcs(
_IMAGE_OUTPUT_LOCAL_DIR, self.output_storage_dir
)
def handle(self, data: Any, context: Any) -> str: # pylint: disable=unused-argument
"""Runs preprocess, inference, and post-processing."""
logging.info("Received Pic2Word inference request")
model_input = self.preprocess(data)
self.inference(model_input)
self.postprocess()
logging.info("Done handling input.")
return _RESPONSE_MSG
@@ -1,59 +0,0 @@
# Dockerfile for serving dockers with timm.
#
# To build:
# docker build -f model_oss/timm/dockerfile/serve.Dockerfile . -t ${YOUR_IMAGE_TAG}
#
# To push to gcr:
# docker tag ${YOUR_IMAGE_TAG} gcr.io/${YOUR_PROJECT}/${YOUR_IMAGE_TAG}
# docker push gcr.io/${YOUR_PROJECT}/${YOUR_IMAGE_TAG}
FROM pytorch/torchserve:0.7.0-gpu
USER root
RUN apt-get update && apt-get install -y --no-install-recommends \
curl \
wget \
vim
# Copy license.
RUN wget https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/main/LICENSE
ENV infer_port=7080
ENV mng_port=7081
ENV model_name="timm_serving"
# Install timm.
RUN python3 -m pip install --upgrade pip
RUN python3 -m pip install timm==0.6.12
RUN python3 -m pip install google-cloud-storage==2.9.0
# Copy model artifacts.
COPY model_oss/timm/handler.py /home/model-server/handler.py
# Create torchserve configuration file.
RUN echo \
"default_response_timeout=1200\n" \
"service_envelope=json\n" \
"inference_address=http://0.0.0.0:${infer_port}\n" \
"management_address=http://0.0.0.0:${mng_port}" >> /home/model-server/config.properties
# Expose ports.
EXPOSE ${infer_port}
EXPOSE ${mng_port}
# Archive eager mode model artifacts and dependencies.
# Do not set --model-file and --serialized-file because model and checkpoint will be dynamically loaded in handler.py.
RUN torch-model-archiver \
--model-name=${model_name} \
--version=1.0 \
--handler=/home/model-server/handler.py \
--runtime=python3 \
--export-path=/home/model-server/model-store \
--archive-format=default \
--force
# Run Torchserve HTTP serve to respond to prediction requests.
CMD ["torchserve", "--start", \
"--ts-config", "/home/model-server/config.properties", \
"--models", "${model_name}=${model_name}.mar", \
"--model-store", "/home/model-server/model-store"]
@@ -1,47 +0,0 @@
# Dockerfile for basic training dockers with timm.
#
# To build:
# docker build -f model_oss/timm/dockerfile/train.Dockerfile . -t ${YOUR_IMAGE_TAG}
#
# To push to gcr:
# docker tag ${YOUR_IMAGE_TAG} gcr.io/${YOUR_PROJECT}/${YOUR_IMAGE_TAG}
# docker push gcr.io/${YOUR_PROJECT}/${YOUR_IMAGE_TAG}
# Base on pytorch-cuda image.
FROM pytorch/pytorch:1.13.0-cuda11.6-cudnn8-runtime
# Install tools.
RUN apt-get update && apt-get install -y --no-install-recommends \
curl \
wget \
vim
# Copy license.
RUN wget https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/main/LICENSE
# Download timm source code with pinned version.
RUN wget -q https://github.com/rwightman/pytorch-image-models/archive/refs/tags/v0.6.12.tar.gz
RUN tar xzf v0.6.12.tar.gz
# Install libraries.
RUN pip install cloudml-hypertune==0.1.0.dev6
# Switch to timm repo.
WORKDIR /workspace/pytorch-image-models-0.6.12
# NOTE: use 'sed' to modify the timm source code to
# make timm CheckpointSaver can work with gcsfuse.
RUN sed -i "1 i\import shutil" timm/utils/checkpoint_saver.py
RUN sed -i "s#os.link#shutil.copyfile#g" timm/utils/checkpoint_saver.py
RUN sed -i "s#os.unlink#os.remove#g" timm/utils/checkpoint_saver.py
# NOTE: use 'sed' to modify the timm source code to
# add hp training support to timm trainer.
RUN sed -i "693 a\ if saver is not None: hpt = hypertune.HyperTune(); hpt.report_hyperparameter_tuning_metric(hyperparameter_metric_tag='top1_accuracy', metric_value=best_metric, global_step=best_epoch)" train.py
RUN sed -i "1 i\import hypertune" train.py
# Install timm from source code.
RUN pip install -e .
# https://pytorch.org/docs/stable/elastic/run.html
ENTRYPOINT ["torchrun"]
@@ -1,97 +0,0 @@
"""Custom handler for TIMM models."""
import logging
import os
from typing import Any
from google.cloud import storage
import timm
import torch
from ts.torch_handler.base_handler import load_label_mapping
from ts.torch_handler.image_classifier import ImageClassifier
GCS_PREFIX = "gs://"
DOWNLOAD_DIR = "/tmp/download"
def download_gcs_file(gcs_uri: str, local_dir: str) -> str:
"""Download a GCS file to a local directory.
Arguments:
gcs_uri: A string of file path on GCS.
local_dir: A string of local directory path.
Returns:
Local path to downloaded file.
"""
if not gcs_uri.startswith(GCS_PREFIX):
raise ValueError(f"{gcs_uri} is not a GCS path starting with gs://.")
file_name = os.path.basename(gcs_uri)
local_file_path = os.path.join(local_dir, file_name)
os.makedirs(local_dir, exist_ok=True)
client = storage.Client()
with open(local_file_path, "wb") as f:
client.download_blob_to_file(gcs_uri, f)
return local_file_path
class TimmHandler(ImageClassifier):
"""Custom handler for TIMM models."""
def initialize(self, context: Any):
"""Custom initialize."""
properties = context.system_properties
self.map_location = (
"cuda"
if torch.cuda.is_available() and properties.get("gpu_id") is not None
else "cpu"
)
self.device = torch.device(
self.map_location + ":" + str(properties.get("gpu_id"))
if torch.cuda.is_available() and properties.get("gpu_id") is not None
else self.map_location
)
self.manifest = context.manifest
# Load timm model by model name.
self.model_name = os.environ["MODEL_NAME"]
# Whether to use timm pretrained weights, MODEL_PT_PATH overrides this.
timm_pretrained = True if os.environ.get("TIMM_PRETRAINED") else False
# Load custom checkpoint, it overrides TIMM_PRETRAINED model.
self.model_pt_path = os.environ.get("MODEL_PT_PATH")
if self.model_pt_path and self.model_pt_path.startswith(GCS_PREFIX):
self.model_pt_path = download_gcs_file(self.model_pt_path, DOWNLOAD_DIR)
if self.model_pt_path and self.model_pt_path.endswith(".pt"):
logging.info(
"Load model with .pt in jit mode, not working for all timm models"
" yet."
)
self.model = self._load_torchscript_model(self.model_pt_path)
else:
logging.info("Load model with .pth in eager mode.")
self.model = timm.create_model(
self.model_name, pretrained=timm_pretrained
)
if self.model_pt_path and (
self.model_pt_path.endswith(".pth")
or self.model_pt_path.endswith(".pth.tar")
):
checkpoint = torch.load(self.model_pt_path, map_location=self.device)
state_dict = checkpoint["state_dict"]
self.model.load_state_dict(state_dict)
self.model.to(self.device)
self.model.eval()
mapping_file_path = os.environ.get("INDEX_TO_NAME_FILE")
if mapping_file_path:
if mapping_file_path.startswith(GCS_PREFIX):
mapping_file_path = download_gcs_file(mapping_file_path, DOWNLOAD_DIR)
self.mapping = load_label_mapping(mapping_file_path)
self.initialized = True
# NOTE: Preprocess and postprocess are implemented by ImageClassifier.
@@ -1,79 +0,0 @@
# Dockerfile for serving dockers for transformers.
#
# To build:
# docker build -f model_oss/transformers/dockerfile/serve.Dockerfile . -t ${YOUR_IMAGE_TAG}
#
# To push to gcr:
# docker tag ${YOUR_IMAGE_TAG} gcr.io/${YOUR_PROJECT}/${YOUR_IMAGE_TAG}
# docker push gcr.io/${YOUR_PROJECT}/${YOUR_IMAGE_TAG}
# Switch to this base image for gpu serve.
FROM pytorch/torchserve:0.7.0-gpu
USER root
ENV infer_port=7080
ENV mng_port=7081
ENV model_name="transformers_serving"
ENV PATH="/home/model-server/:${PATH}"
# Install libraries.
ENV PIP_ROOT_USER_ACTION=ignore
RUN python3 -m pip install --upgrade pip
RUN pip install torch==1.13.1
RUN pip install torchvision==0.14.1
RUN pip install transformers==4.27.4
RUN pip install datasets==2.9.0
RUN pip install accelerate==0.17.0
RUN pip install triton==2.0.0.dev20221120
RUN pip install xformers==0.0.16
RUN pip install google-cloud-storage==2.7.0
RUN pip install absl-py==1.4.0
# Install libraries for document-question-answering.
RUN apt-get update
RUN apt-get install -y --no-install-recommends tesseract-ocr
RUN pip install tesseract==0.1.3
RUN pip install pytesseract==0.3.10
# Install tools.
RUN apt-get update && apt-get install -y --no-install-recommends \
curl \
wget \
vim
# Copy license.
RUN wget https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/main/LICENSE
# Copy model artifacts.
COPY model_oss/transformers/handler.py /home/model-server/handler.py
COPY model_oss/util/ /home/model-server/util/
ENV PYTHONPATH /home/model-server/
# Create torchserve configuration file.
RUN echo \
"default_response_timeout=1800\n" \
"service_envelope=json\n" \
"inference_address=http://0.0.0.0:${infer_port}\n" \
"management_address=http://0.0.0.0:${mng_port}" >> /home/model-server/config.properties
# Expose ports.
EXPOSE ${infer_port}
EXPOSE ${mng_port}
# Archive model artifacts and dependencies.
# Do not set --model-file and --serialized-file because model and checkpoint will be dynamically loaded in handler.py.
RUN torch-model-archiver \
--model-name=${model_name} \
--version=1.0 \
--handler=/home/model-server/handler.py \
--runtime=python3 \
--export-path=/home/model-server/model-store \
--archive-format=default \
--force
# Run Torchserve HTTP serve to respond to prediction requests.
CMD ["torchserve", "--start", \
"--ts-config", "/home/model-server/config.properties", \
"--models", "${model_name}=${model_name}.mar", \
"--model-store", "/home/model-server/model-store"]
@@ -1,233 +0,0 @@
"""Custom handler for huggingface/transformers models."""
# pylint: disable=g-multiple-import
# pylint: disable=g-importing-member
import logging
import os
from typing import Any, List, Optional, Tuple
from PIL import Image
import torch
from transformers import (
AutoProcessor,
AutoTokenizer,
Blip2ForConditionalGeneration,
Blip2Processor,
BlipForConditionalGeneration,
BlipForQuestionAnswering,
BlipProcessor,
CLIPModel,
)
from transformers import pipeline
from ts.torch_handler.base_handler import BaseHandler
from util import constants
from util import fileutils
from util import image_format_converter
DEFAULT_MODEL_ID = "openai/clip-vit-base-patch32"
SALESFORCE_BLIP = "Salesforce/blip"
SALESFORCE_BLIP2 = "Salesforce/blip2"
FLAN_T5 = "flan-t5"
BART_LARGE_CNN = "facebook/bart-large-cnn"
ZERO_CLASSIFICATION = "zero-shot-image-classification"
FEATURE_EMBEDDING = "feature-embedding"
ZERO_DETECTION = "zero-shot-object-detection"
IMAGE_CAPTIONING = "image-to-text"
VQA = "visual-question-answering"
DQA = "document-question-answering"
SUMMARIZATION = "summarization"
SUMMARIZATION_TEMPLATE = (
"Summarize the following news article:\n{input}\nSummary:\n"
)
class TransformersHandler(BaseHandler):
"""Custom handler for huggingface/transformers models."""
def initialize(self, context: Any):
"""Custom initialize."""
properties = context.system_properties
self.map_location = (
"cuda"
if torch.cuda.is_available() and properties.get("gpu_id") is not None
else "cpu"
)
self.device = torch.device(
self.map_location + ":" + str(properties.get("gpu_id"))
if torch.cuda.is_available() and properties.get("gpu_id") is not None
else self.map_location
)
self.manifest = context.manifest
# The model id is can be either:
# 1) a huggingface model card id, like "Salesforce/blip", or
# 2) a GCS path to the model files, like "gs://foo/bar".
# If it's a model card id, the model will be loaded from huggingface.
self.model_id = (
DEFAULT_MODEL_ID
if os.environ.get("MODEL_ID") is None
else os.environ["MODEL_ID"]
)
# Else it will be downloaded from GCS to local first.
# Since the transformers from_pretrained API can't read from GCS.
if self.model_id.startswith(constants.GCS_URI_PREFIX):
gcs_path = self.model_id[len(constants.GCS_URI_PREFIX) :]
local_model_dir = os.path.join(constants.LOCAL_MODEL_DIR, gcs_path)
logging.info("Download %s to %s", self.model_id, local_model_dir)
fileutils.download_gcs_dir_to_local(self.model_id, local_model_dir)
self.model_id = local_model_dir
self.task = (
ZERO_CLASSIFICATION
if os.environ.get("TASK") is None
else os.environ["TASK"]
)
logging.info(
"Handler initializing task:%s, model:%s", self.task, self.model_id
)
if SALESFORCE_BLIP in self.model_id:
# pipeline() hasn't been ready for Salesforce/blip models.
self.salesforce_blip = True
self._create_blip_model()
else:
self.salesforce_blip = False
if self.task == FEATURE_EMBEDDING:
self.model = CLIPModel.from_pretrained(self.model_id).to(
self.map_location
)
self.tokenizer = AutoTokenizer.from_pretrained(self.model_id)
self.processor = AutoProcessor.from_pretrained(self.model_id)
elif self.task == SUMMARIZATION and FLAN_T5 in self.model_id:
self.pipeline = pipeline(
task=self.task,
model=self.model_id,
torch_dtype=torch.bfloat16,
device_map="auto",
)
else:
self.pipeline = pipeline(
task=self.task, model=self.model_id, device=self.device
)
self.initialized = True
logging.info("Handler initialization done.")
def _create_blip_model(self):
"""A helper for creating BLIP and BLIP2 models."""
if SALESFORCE_BLIP2 in self.model_id:
self.torch_type = torch.float16
self.processor = Blip2Processor.from_pretrained(self.model_id)
self.model = Blip2ForConditionalGeneration.from_pretrained(
self.model_id, torch_dtype=self.torch_type
).to(self.map_location)
else:
self.torch_type = torch.float32
self.processor = BlipProcessor.from_pretrained(self.model_id)
if self.task == IMAGE_CAPTIONING:
self.model = BlipForConditionalGeneration.from_pretrained(
self.model_id
).to(self.map_location)
elif self.task == VQA:
self.model = BlipForQuestionAnswering.from_pretrained(self.model_id).to(
self.map_location
)
def _reformat_detection_result(self, data: List[Any]) -> List[Any]:
"""Reformat zero-shot-object-detection output."""
if not data:
return [data]
boxes = {}
boxes["label"] = data[0]["label"]
boxes["boxes"] = []
for item in data:
box = {}
box["score"] = item["score"]
box.update(item["box"])
boxes["boxes"].append(box)
outputs = [boxes]
return outputs
def preprocess(
self, data: Any
) -> Tuple[Optional[List[str]], Optional[List[Image.Image]]]:
"""Preprocess input data."""
texts = None
images = None
if "text" in data[0]:
texts = [item["text"] for item in data]
if "image" in data[0]:
images = [
image_format_converter.base64_to_image(item["image"]) for item in data
]
return texts, images
def inference(self, data: Any, *args, **kwargs) -> List[Any]:
"""Run the inference."""
texts, images = data
preds = None
if self.task == ZERO_CLASSIFICATION:
preds = self.pipeline(images=images, candidate_labels=texts)
elif self.task == ZERO_DETECTION:
# The object detection pipeline doesn't support batch prediction.
preds = self.pipeline(image=images[0], candidate_labels=texts[0])
elif self.task == IMAGE_CAPTIONING:
if self.salesforce_blip:
inputs = self.processor(images[0], return_tensors="pt").to(
self.map_location, self.torch_type
)
preds = self.model.generate(**inputs)
preds = [
self.processor.decode(preds[0], skip_special_tokens=True).strip()
]
else:
preds = self.pipeline(images=images)
elif self.task == VQA:
# The VQA pipelines doesn't support batch prediction.
if self.salesforce_blip:
inputs = self.processor(images[0], texts[0], return_tensors="pt").to(
self.map_location, self.torch_type
)
preds = self.model.generate(**inputs)
preds = [
self.processor.decode(preds[0], skip_special_tokens=True).strip()
]
else:
preds = self.pipeline(image=images[0], question=texts[0])
elif self.task == DQA:
# The DQA pipelines doesn't support batch prediction.
preds = self.pipeline(image=images[0], question=texts[0])
elif self.task == FEATURE_EMBEDDING:
preds = {}
if texts:
inputs = self.tokenizer(
text=texts, padding=True, return_tensors="pt"
).to(self.map_location)
text_features = self.model.get_text_features(**inputs)
preds["text_features"] = text_features.detach().cpu().numpy().tolist()
if images:
inputs = self.processor(images=images, return_tensors="pt").to(
self.map_location
)
image_features = self.model.get_image_features(**inputs)
preds["image_features"] = image_features.detach().cpu().numpy().tolist()
preds = [preds]
elif self.task == SUMMARIZATION and FLAN_T5 in self.model_id:
texts = [SUMMARIZATION_TEMPLATE.format(input=text) for text in texts]
preds = self.pipeline(texts, max_length=130)
elif self.task == SUMMARIZATION and self.model_id == BART_LARGE_CNN:
preds = self.pipeline(
texts[0], max_length=130, min_length=30, do_sample=False
)
else:
raise ValueError(f"Invalid TASK: {self.task}")
return preds
def postprocess(self, data: Any) -> List[Any]:
if self.task == ZERO_DETECTION:
data = self._reformat_detection_result(data)
return data
@@ -1,79 +0,0 @@
"""Common utility lib for prediction on images."""
from typing import Any, Dict, List
import numpy as np
from PIL import Image
import tensorflow as tf
import yaml
from util import image_format_converter
def get_prediction_instances(image: Image.Image) -> List[Dict[str, Any]]:
"""Gets prediction instances.
Args:
image: Image instance.
Returns:
List[Dict[str, Any]]: List of prediction instances.
"""
instances = [{
"encoded_image": {"b64": image_format_converter.image_to_base64(image)},
}]
return instances
def get_label_map(label_map_yaml_filepath: str) -> Dict[str, Any]:
"""Gets the label map from a YAML file.
Args:
label_map_yaml_filepath: Filepath to the label map YAML file.
Returns:
dict: Label map.
"""
with tf.io.gfile.GFile(label_map_yaml_filepath, "rb") as input_file:
label_map = yaml.safe_load(input_file.read())
return label_map
def get_object_detection_endpoint_predictions(
detection_endpoint: ...,
input_image: np.ndarray,
detection_thresh: float = 0.2,
) -> np.ndarray:
"""Gets endpoint predictions.
Args:
detection_endpoint: image object detection endpoint.
input_image: Input image.
detection_thresh: Detection threshold.
Returns:
Object detection predictions from endpoints.
"""
height, width, _ = input_image.shape
predictions = detection_endpoint.predict(
get_prediction_instances(Image.fromarray(input_image))
).predictions
detection_scores = np.array(predictions[0]["detection_scores"])
detection_classes = np.array(predictions[0]["detection_classes"])
detection_boxes = np.array(
[
[b[1] * width, b[0] * height, b[3] * width, b[2] * height]
for b in predictions[0]["detection_boxes"]
]
)
thresh_indices = [
x for x, val in enumerate(detection_scores) if val > detection_thresh
]
preds_merge_conf = np.column_stack((
detection_boxes[thresh_indices],
detection_scores[thresh_indices],
))
preds_merge_cls = np.column_stack(
(preds_merge_conf, detection_classes[thresh_indices])
)
return preds_merge_cls
@@ -1,85 +0,0 @@
"""Vertex vision model garden util constants."""
# TfVision Objectives.
OBJECTIVE_IMAGE_CLASSIFICATION = 'icn'
OBJECTIVE_IMAGE_OBJECT_DETECTION = 'iod'
OBJECTIVE_IMAGE_SEGMENTATION = 'isg'
OBJECTIVE_VIDEO_CLASSIFICATION = 'vcn'
OBJECTIVE_VIDEO_ACTION_RECOGNITION = 'var'
# PyTorch Models.
OBJECTIVE_TIMM = 'timm'
# Input file types.
INPUT_FILE_TYPE_CSV = 'csv'
INPUT_FILE_TYPE_JSONL = 'jsonl'
INPUT_FILE_TYPE_COCO_JSON = 'coco_json'
# Output file types.
OUTPUT_FILE_TYPE_TFRECORD = 'tfrecord'
OUTPUT_FILE_TYPE_COCO_JSON = 'coco_json'
# Best evaluation metrics.
IMAGE_CLASSIFICATION_SINGLE_LABEL_BEST_EVAL_METRIC = 'accuracy'
IMAGE_CLASSIFICATION_MULTI_LABEL_BEST_EVAL_METRIC = 'meanPR-AUC'
IMAGE_OBJECT_DETECTION_BEST_EVAL_METRIC = 'AP50'
IMAGE_SEGMENTATION_BEST_EVAL_METRIC = 'mean_iou'
VIDEO_CLASSIFICATION_BEST_EVAL_METRIC = 'accuracy'
# Best checkpoints.
BEST_CKPT_DIRNAME = 'best_ckpt'
BEST_CKPT_EVAL_FILENAME = 'info.json'
BEST_CKPT_STEP_NAME = 'best_ckpt_global_step'
BEST_CKPT_METRIC_COMP = 'higher'
# Reported hyperparameter tuning metric tag.
HP_METRIC_TAG = 'model_performance'
# HPT trial prefix.
TRIAL_PREFIX = 'trial_'
# ML uses from user input.
ML_USE_TRAINING = 'training'
ML_USE_VALIDATION = 'validation'
ML_USE_TEST = 'test'
# COCO json keys
COCO_JSON_ANNOTATIONS = 'annotations'
COCO_JSON_ANNOTATION_IMAGE_ID = 'image_id'
COCO_JSON_ANNOTATION_CATEGORY_ID = 'category_id'
COCO_JSON_CATEGORIES = 'categories'
COCO_JSON_CATEGORY_ID = 'id'
COCO_JSON_CATEGORY_NAME = 'name'
COCO_JSON_FILE_NAME = 'file_name'
COCO_JSON_IMAGES = 'images'
COCO_JSON_IMAGE_ID = 'id'
COCO_JSON_IMAGE_WIDTH = 'width'
COCO_JSON_IMAGE_HEIGHT = 'height'
COCO_JSON_IMAGE_COCO_URL = 'coco_url'
COCO_ANNOTATION_BBOX = 'bbox'
# GCS prefixes
GCS_URI_PREFIX = 'gs://'
GCSFUSE_URI_PREFIX = '/gcs/'
LOCAL_EVALUATION_RESULT_DIR = '/tmp/evaluation_result_dir'
LOCAL_MODEL_DIR = '/tmp/model_dir'
LOCAL_BASE_MODEL_DIR = '/tmp/base_model_dir'
LOCAL_DATA_DIR = '/tmp/data'
# Huggingface files.
HF_MODEL_WEIGHTS_SUFFIX = '.bin'
# PEFT finetuning constants.
TEXT_TO_IMAGE_LORA = 'text-to-image-lora'
SEQUENCE_CLASSIFICATION_LORA = 'sequence-classification-lora'
CAUSAL_LANGUAGE_MODELING_LORA = 'causal-language-modeling-lora'
INSTRUCT_LORA = 'instruct-lora'
# Precision modes for loading model weights.
PRECISION_MODE_4 = '4bit'
PRECISION_MODE_8 = '8bit'
PRECISION_MODE_16 = 'float16'
PRECISION_MODE_32 = 'float32'
@@ -1,257 +0,0 @@
"""Fileutil lib to copy files between gcs and local."""
import glob
import os
import pathlib
import shutil
from typing import Tuple
import uuid
from absl import logging
from google.cloud import storage
from util import constants
def generate_tmp_path(extension: str = '') -> str:
"""Generates a temporary file path with UUID.
Args:
extension: File extension, e.g. '.jpg', '.avi'. If not given, no extension
will be appended to the filename.
Returns:
Generated file path.
"""
return os.path.join(constants.LOCAL_DATA_DIR, uuid.uuid1().hex) + extension
def force_gcs_fuse_path(gcs_uri: str) -> str:
"""Converts gs:// uris to their /gcs/ equivalents. No-op for other uris."""
if is_gcs_path(gcs_uri):
return (
constants.GCSFUSE_URI_PREFIX + gcs_uri[len(constants.GCS_URI_PREFIX) :]
)
else:
return gcs_uri
def download_gcs_file_to_local_dir(gcs_uri: str, local_dir: str):
"""Download a gcs file to a local dir.
Args:
gcs_uri: A string of file path on GCS.
local_dir: A string of local directory.
"""
if not is_gcs_path(gcs_uri):
raise ValueError(
f'{gcs_uri} is not a GCS path starting with {constants.GCS_URI_PREFIX}.'
)
filename = os.path.basename(gcs_uri)
download_gcs_file_to_local(gcs_uri, os.path.join(local_dir, filename))
def download_gcs_file_to_local(gcs_uri: str, local_path: str):
"""Download a gcs file to a local path.
Args:
gcs_uri: A string of file path on GCS.
local_path: A string of local file path.
"""
if not is_gcs_path(gcs_uri):
raise ValueError(
f'{gcs_uri} is not a GCS path starting with {constants.GCS_URI_PREFIX}.'
)
client = storage.Client()
os.makedirs(os.path.dirname(local_path), exist_ok=True)
with open(local_path, 'wb') as f:
client.download_blob_to_file(gcs_uri, f)
def download_gcs_dir_to_local(
gcs_dir: str, local_dir: str, skip_hf_model_bin: bool = False
):
"""Downloads files in a GCS directory to a local directory.
For example:
download_gcs_dir_to_local(gs://bucket/foo, /tmp/bar)
gs://bucket/foo/a -> /tmp/bar/a
gs://bucket/foo/b/c -> /tmp/bar/b/c
Arguments:
gcs_dir: A string of directory path on GCS.
local_dir: A string of local directory path.
skip_hf_model_bin: True to skip downloading HF model bin files.
"""
if not is_gcs_path(gcs_dir):
raise ValueError(f'{gcs_dir} is not a GCS path starting with gs://.')
bucket_name = gcs_dir.split('/')[2]
prefix = gcs_dir[len(constants.GCS_URI_PREFIX + bucket_name) :].strip('/')
client = storage.Client()
blobs = client.list_blobs(bucket_name, prefix=prefix)
for blob in blobs:
if blob.name[-1] == '/':
continue
file_path = blob.name[len(prefix) :].strip('/')
local_file_path = os.path.join(local_dir, file_path)
os.makedirs(os.path.dirname(local_file_path), exist_ok=True)
if (
file_path.endswith(constants.HF_MODEL_WEIGHTS_SUFFIX)
and skip_hf_model_bin
):
logging.info('Skip downloading model bin %s', file_path)
with open(local_file_path, 'w') as f:
f.write(f'{constants.GCS_URI_PREFIX}{bucket_name}/{prefix}/{file_path}')
else:
logging.info('Downloading %s to %s', file_path, local_file_path)
blob.download_to_filename(local_file_path)
def upload_local_dir_to_gcs(local_dir: str, gcs_dir: str):
"""Uploads local dir to gcs.
For example:
upload_local_dir_to_gcs(/tmp/bar, gs://bucket/foo)
gs://bucket/foo/a -> /tmp/bar/a
gs://bucket/foo/b/c -> /tmp/bar/b/c
Arguments:
local_dir: A string of local directory path.
gcs_dir: A string of directory path on GCS.
"""
bucket_name = gcs_dir.split('/')[2]
blob_dir = '/'.join(gcs_dir.split('/')[3:])
client = storage.Client()
bucket = client.bucket(bucket_name)
for local_file in glob.glob(local_dir + '/**'):
if os.path.isfile(local_file):
logging.info(
'Uploading %s to %s',
local_file,
os.path.join(constants.GCS_URI_PREFIX, bucket_name, blob_dir),
)
blob = bucket.blob(os.path.join(blob_dir, os.path.basename(local_file)))
blob.upload_from_filename(local_file)
def upload_file_to_gcs_path(
source_path: str,
destination_uri: str,
):
"""Uploads local files to GCS uri.
After upload the destination_uri will contain the same data as the
source_path.
Args:
source_path: Required. Path of the local data to copy to GCS.
destination_uri: Required. GCS URI where the data should be uploaded.
Raises:
RuntimeError: When source_path does not exist.
GoogleCloudError: When the upload process fails.
"""
source_path_obj = pathlib.Path(source_path)
if not source_path_obj.exists():
raise RuntimeError(f'Source path does not exist: {source_path}')
storage_client = storage.Client()
source_file_path = source_path
destination_file_uri = destination_uri
logging.info('Uploading "%s" to "%s"', source_file_path, destination_file_uri)
destination_blob = storage.Blob.from_string(
destination_file_uri, client=storage_client
)
destination_blob.upload_from_filename(filename=source_file_path)
def is_gcs_path(input_path: str) -> bool:
"""Checks if the input path is a Google Cloud Storage (GCS) path.
Args:
input_path: The input path to be checked.
Returns:
True if the input path is a GCS path, False otherwise.
"""
return input_path.startswith(constants.GCS_URI_PREFIX)
def release_text_assets(
output_bucket: str, local_text_file_name: str, remote_text_file_name: str
) -> None:
"""Releases text assets.
Args:
output_bucket: gcs output bucket.
local_text_file_name: Local text file name.
remote_text_file_name: Remote text file name.
Returns:
None
"""
remote_file_path = '{}/{}'.format(output_bucket, remote_text_file_name)
logging.info('Uploading "%s" to "%s"', local_text_file_name, remote_file_path)
upload_file_to_gcs_path(local_text_file_name, remote_file_path)
os.remove(local_text_file_name)
def upload_video_from_local_to_gcs(
output_bucket: str,
local_video_file_name: str,
remote_video_file_name: str,
temp_local_video_file_name: str,
) -> None:
"""Uploads video from local to gcs buckent and releases video assets.
Args:
output_bucket: GCS bucket address.
local_video_file_name: Local video file name.
remote_video_file_name: Remote video file name.
temp_local_video_file_name: Temporary local video file name.
Returns:
None
"""
upload_file_to_gcs_path(
temp_local_video_file_name,
'{}/{}'.format(output_bucket, remote_video_file_name),
)
shutil.rmtree(local_video_file_name, ignore_errors=True)
shutil.rmtree(temp_local_video_file_name, ignore_errors=True)
def download_video_from_gcs_to_local(video_file_path: str) -> Tuple[str, str]:
"""Downloads video from gcs to local folders.
Args:
video_file_path: Path to the video file.
Returns:
Local and remote video file paths.
"""
_, local_video_file_name = os.path.split(video_file_path)
file_extension = os.path.splitext(video_file_path)[1]
remote_video_file_name = local_video_file_name.replace(
file_extension, '_overlay.mp4'
)
local_file_path = generate_tmp_path(os.path.splitext(video_file_path)[1])
logging.info('Downloading %s to %s...', video_file_path, local_file_path)
download_gcs_file_to_local(video_file_path, local_file_path)
return local_file_path, remote_video_file_name
def get_output_video_file(video_output_file_path: str) -> str:
"""Gets the output video file name for writing video.
Args:
video_output_file_path: Path to the video output file.
Returns:
str: Local video output file path.
"""
file_extension = os.path.splitext(video_output_file_path)[1]
out_local_video_file_name = video_output_file_path.replace(
file_extension, '_overlay' + file_extension
)
return out_local_video_file_name
@@ -1,22 +0,0 @@
"""Utility functions for Vertex Hyperparameter Tuning Jobs."""
import os
from absl import logging
_ENVIRONMENT_VARIABLE_FOR_TRIAL_ID = 'CLOUD_ML_TRIAL_ID'
def get_trial_id_from_environment() -> str:
"""Gets the trial id from environment variable.
Returns:
The trial id from environement or '0' if not found.
"""
if _ENVIRONMENT_VARIABLE_FOR_TRIAL_ID not in os.environ:
logging.warning(
'Environment variable %s not found, return 0 as default trial id.',
_ENVIRONMENT_VARIABLE_FOR_TRIAL_ID,
)
return os.environ.get(_ENVIRONMENT_VARIABLE_FOR_TRIAL_ID, '0')
@@ -1,20 +0,0 @@
"""Image format converter util lib."""
import base64
import io
from PIL import Image
def image_to_base64(image: Image.Image) -> str:
"""Convert a PIL image to a base64 string."""
buffer = io.BytesIO()
image.save(buffer, format="JPEG")
image_str = base64.b64encode(buffer.getvalue()).decode("utf-8")
return image_str
def base64_to_image(image_str: str) -> Image.Image:
"""Convert a base64 string to a PIL image."""
image = Image.open(io.BytesIO(base64.b64decode(image_str)))
return image
@@ -1,73 +0,0 @@
# Dockerfile for vLLM serving.
#
# To build:
# docker build -f model_oss/vllm/dockerfile/serve.Dockerfile . -t ${YOUR_IMAGE_TAG}
#
# To push to gcr:
# docker tag ${YOUR_IMAGE_TAG} gcr.io/{YOUR_PROJECT}/${YOUR_IMAGE_TAG}
# docker push gcr.io/{YOUR_PROJECT}/${YOUR_IMAGE_TAG}
# The base image is required by vllm
# https://vllm.readthedocs.io/en/latest/getting_started/installation.html
FROM nvcr.io/nvidia/pytorch:22.12-py3
USER root
# Install tools.
ENV DEBIAN_FRONTEND=noninteractive
RUN apt-get update
RUN apt-get install -y --no-install-recommends apt-utils
RUN apt-get install -y --no-install-recommends curl
RUN apt-get install -y --no-install-recommends wget
RUN apt-get install -y --no-install-recommends git
RUN apt-get install -y --no-install-recommends jq
RUN apt-get install -y --no-install-recommends gnupg
# Copy license.
RUN wget https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/main/LICENSE
# Install libraries.
ENV PIP_ROOT_USER_ACTION=ignore
RUN python3 -m pip install --upgrade pip
RUN pip install google-cloud-storage==2.7.0
RUN pip install absl-py==1.4.0
# Install pytorch
RUN pip install --upgrade torch==2.0.1
# Install vllm deps.
RUN pip install xformers==0.0.20
RUN pip install ninja==1.11.1
RUN pip install psutil==5.9.5
RUN pip install ray==2.6.2
RUN pip install sentencepiece==0.1.99
RUN pip install fastapi==0.100.1
RUN pip install uvicorn==0.23.2
RUN pip install pydantic==1.10.12
# Install transformers from source.
WORKDIR /workspace
RUN git clone https://github.com/huggingface/transformers.git
WORKDIR transformers
# Pin the commit to add-code-llama at 08/25/2023
RUN git reset --hard 015f8e110d270a0ad42de4ae5b98198d69eb1964
RUN pip install -e .
WORKDIR /workspace
# Install vllm from source.
RUN git clone https://github.com/vllm-project/vllm.git
WORKDIR vllm
# Pin the version to a fixed git commit on 08/16/2023.
RUN git reset --hard d1744376ae9fdbfa6a2dc763e1c67309e138fa3d
# Apply a patch to vllm source:
# 1) For models on Huggingface hub: if the model has multiple bin files, each
# bin file is downloaded separately and gets deleted after loading to GPU
# 2) For models on GCS bucket: each model bin files is download separately
# and gets deleted after loading to GPU.
# 3) Support code-llama model loading.
COPY model_oss/vllm/vllm.patch /tmp/vllm.patch
RUN git apply /tmp/vllm.patch
RUN pip install -e .
# Expose port 7080 for host serving.
EXPOSE 7080
@@ -1,311 +0,0 @@
diff --git a/vllm/engine/arg_utils.py b/vllm/engine/arg_utils.py
index 99fe593..e11246b 100644
--- a/vllm/engine/arg_utils.py
+++ b/vllm/engine/arg_utils.py
@@ -1,12 +1,43 @@
import argparse
import dataclasses
from dataclasses import dataclass
+import os
from typing import Optional, Tuple
+from google.cloud import storage
from vllm.config import (CacheConfig, ModelConfig, ParallelConfig,
SchedulerConfig)
+GCS_PREFIX = "gs://"
+
+
+def is_gcs_path(input_path: str) -> bool:
+ return input_path.startswith(GCS_PREFIX)
+
+
+def download_gcs_dir_to_local(gcs_dir: str, local_dir: str):
+ if os.path.isdir(local_dir):
+ return
+ # gs://bucket_name/dir
+ bucket_name = gcs_dir.split('/')[2]
+ prefix = gcs_dir[len(GCS_PREFIX + bucket_name) :].strip('/')
+ client = storage.Client()
+ blobs = client.list_blobs(bucket_name, prefix=prefix)
+ for blob in blobs:
+ if blob.name[-1] == '/':
+ continue
+ file_path = blob.name[len(prefix) :].strip('/')
+ local_file_path = os.path.join(local_dir, file_path)
+ os.makedirs(os.path.dirname(local_file_path), exist_ok=True)
+ if file_path.endswith(".bin"):
+ with open(local_file_path, 'w') as f:
+ f.write(f'{GCS_PREFIX}{bucket_name}/{prefix}/{file_path}')
+ else:
+ print(f"==> Download {gcs_dir}/{file_path} to {local_file_path}")
+ blob.download_to_filename(local_file_path)
+
+
@dataclass
class EngineArgs:
"""Arguments for vLLM engine."""
@@ -143,6 +174,19 @@ class EngineArgs:
def create_engine_configs(
self,
) -> Tuple[ModelConfig, CacheConfig, ParallelConfig, SchedulerConfig]:
+ # Preprocess GCS paths.
+ if is_gcs_path(self.tokenizer) and self.tokenizer != self.model:
+ local_dir = "/tmp/gcs_tokenizer"
+ download_gcs_dir_to_local(self.tokenizer, local_dir)
+ self.tokenizer = local_dir
+ if is_gcs_path(self.model):
+ # Download GCS model without bin files.
+ local_dir = "/tmp/gcs_model"
+ download_gcs_dir_to_local(self.model, local_dir)
+ if self.tokenizer == self.model:
+ self.tokenizer = local_dir
+ self.model = local_dir
+
# Initialize the configs.
model_config = ModelConfig(self.model, self.tokenizer,
self.tokenizer_mode, self.trust_remote_code,
diff --git a/vllm/entrypoints/api_server.py b/vllm/entrypoints/api_server.py
index 58ea2e2..350e209 100644
--- a/vllm/entrypoints/api_server.py
+++ b/vllm/entrypoints/api_server.py
@@ -15,6 +15,10 @@ TIMEOUT_KEEP_ALIVE = 5 # seconds.
TIMEOUT_TO_PREVENT_DEADLOCK = 1 # seconds.
app = FastAPI()
+# Required by Vertex deployment.
+@app.get("/ping")
+async def ping() -> Response:
+ return Response(status_code=200)
@app.post("/generate")
async def generate(request: Request) -> Response:
@@ -26,6 +30,9 @@ async def generate(request: Request) -> Response:
- other fields: the sampling parameters (See `SamplingParams` for details).
"""
request_dict = await request.json()
+ is_on_vertex = "instances" in request_dict
+ if is_on_vertex:
+ request_dict = request_dict["instances"][0]
prompt = request_dict.pop("prompt")
stream = request_dict.pop("stream", False)
sampling_params = SamplingParams(**request_dict)
@@ -63,7 +70,10 @@ async def generate(request: Request) -> Response:
assert final_output is not None
prompt = final_output.prompt
text_outputs = [prompt + output.text for output in final_output.outputs]
- ret = {"text": text_outputs}
+ if is_on_vertex:
+ ret = {"predictions": text_outputs}
+ else:
+ ret = {"text": text_outputs}
return JSONResponse(ret)
diff --git a/vllm/model_executor/models/llama.py b/vllm/model_executor/models/llama.py
index 93ab499..eca1b89 100644
--- a/vllm/model_executor/models/llama.py
+++ b/vllm/model_executor/models/llama.py
@@ -85,6 +85,7 @@ class LlamaAttention(nn.Module):
hidden_size: int,
num_heads: int,
num_kv_heads: int,
+ rope_theta: float = 10000,
):
super().__init__()
self.hidden_size = hidden_size
@@ -99,6 +100,7 @@ class LlamaAttention(nn.Module):
self.q_size = self.num_heads * self.head_dim
self.kv_size = self.num_kv_heads * self.head_dim
self.scaling = self.head_dim**-0.5
+ self.rope_theta = rope_theta
self.qkv_proj = ColumnParallelLinear(
hidden_size,
@@ -118,6 +120,7 @@ class LlamaAttention(nn.Module):
self.attn = PagedAttentionWithRoPE(self.num_heads,
self.head_dim,
self.scaling,
+ base=self.rope_theta,
rotary_dim=self.head_dim,
num_kv_heads=self.num_kv_heads)
@@ -143,10 +146,15 @@ class LlamaDecoderLayer(nn.Module):
def __init__(self, config: LlamaConfig):
super().__init__()
self.hidden_size = config.hidden_size
+ try:
+ rope_theta = config.rope_theta
+ except AttributeError:
+ rope_theta = 10000
self.self_attn = LlamaAttention(
hidden_size=self.hidden_size,
num_heads=config.num_attention_heads,
num_kv_heads=config.num_key_value_heads,
+ rope_theta=rope_theta,
)
self.mlp = LlamaMLP(
hidden_size=self.hidden_size,
diff --git a/vllm/model_executor/weight_utils.py b/vllm/model_executor/weight_utils.py
index a9d899a..57f39b5 100644
--- a/vllm/model_executor/weight_utils.py
+++ b/vllm/model_executor/weight_utils.py
@@ -3,13 +3,17 @@ import filelock
import glob
import json
import os
+import time
from typing import Iterator, List, Optional, Tuple
-from huggingface_hub import snapshot_download
+from google.cloud import storage
+from huggingface_hub import hf_hub_download, snapshot_download
import numpy as np
import torch
from tqdm.auto import tqdm
+HF_PREFIX = "hf://"
+
class Disabledtqdm(tqdm):
@@ -22,60 +26,90 @@ def hf_model_weights_iterator(
cache_dir: Optional[str] = None,
use_np_cache: bool = False,
) -> Iterator[Tuple[str, torch.Tensor]]:
+ if use_np_cache:
+ raise ValueError("Do not support use_np_cache for lazy download.")
+
# Prepare file lock directory to prevent multiple processes from
# downloading the same model weights at the same time.
lock_dir = cache_dir if cache_dir is not None else "/tmp"
lock_file_name = model_name_or_path.replace("/", "-") + ".lock"
lock = filelock.FileLock(os.path.join(lock_dir, lock_file_name))
- # Download model weights from huggingface.
- is_local = os.path.isdir(model_name_or_path)
- if not is_local:
- with lock:
- hf_folder = snapshot_download(model_name_or_path,
- allow_patterns="*.bin",
- cache_dir=cache_dir,
- tqdm_class=Disabledtqdm)
- else:
- hf_folder = model_name_or_path
-
- hf_bin_files = [
- x for x in glob.glob(os.path.join(hf_folder, "*.bin"))
- if not x.endswith("training_args.bin")
- ]
-
- if use_np_cache:
- # Convert the model weights from torch tensors to numpy arrays for
- # faster loading.
- np_folder = os.path.join(hf_folder, "np")
- os.makedirs(np_folder, exist_ok=True)
- weight_names_file = os.path.join(np_folder, "weight_names.json")
- with lock:
- if not os.path.exists(weight_names_file):
- weight_names = []
- for bin_file in hf_bin_files:
- state = torch.load(bin_file, map_location="cpu")
- for name, param in state.items():
- param_path = os.path.join(np_folder, name)
- with open(param_path, "wb") as f:
- np.save(f, param.cpu().detach().numpy())
- weight_names.append(name)
- with open(weight_names_file, "w") as f:
- json.dump(weight_names, f)
-
- with open(weight_names_file, "r") as f:
- weight_names = json.load(f)
-
- for name in weight_names:
- param_path = os.path.join(np_folder, name)
- with open(param_path, "rb") as f:
- param = np.load(f)
- yield name, torch.from_numpy(param)
+ bin_files = []
+ if not os.path.isdir(model_name_or_path):
+ try:
+ with lock:
+ index_file = hf_hub_download(repo_id=model_name_or_path,
+ filename="pytorch_model.bin.index.json",
+ cache_dir=cache_dir)
+ except:
+ print("==> The model is in HF hub with 1 bin file, download it directly.", flush=True)
+ with lock:
+ hf_folder = snapshot_download(repo_id=model_name_or_path,
+ allow_patterns="*.bin",
+ cache_dir=cache_dir,
+ tqdm_class=Disabledtqdm)
+ bin_files = [x for x in glob.glob(os.path.join(hf_folder, "*.bin"))]
+ else:
+ print("==> The model is in HF hub with multiple bin file, do not download it now.", flush=True)
+ with open(index_file, "r") as f:
+ index = json.loads(f.read())
+ bin_filenames = set(index["weight_map"].values())
+ bin_files = [f"{HF_PREFIX}{model_name_or_path}/{bin_filename}" for bin_filename in bin_filenames]
else:
- for bin_file in hf_bin_files:
- state = torch.load(bin_file, map_location="cpu")
- for name, param in state.items():
- yield name, param
+ print("==> The model is in local disk.", flush=True)
+ bin_files = [x for x in glob.glob(os.path.join(model_name_or_path, "*.bin"))]
+
+ if "training_args.bin" in bin_files:
+ bin_files.remove("training_args.bin")
+ bin_files.sort()
+ print(f"==> Fetched bin files: {bin_files}", flush=True)
+
+ model_dir = "/tmp/model"
+ os.makedirs(model_dir, exist_ok=True)
+ for bin_file in bin_files:
+ delete_download = False
+
+ if os.path.exists(bin_file):
+ if open(bin_file, "rb").read(2) == b"gs":
+ gcs_path = open(bin_file).read()
+ bin_filename = gcs_path.split("/")[-1]
+ local_file = os.path.join(model_dir, bin_filename)
+ with lock:
+ if not os.path.exists(local_file):
+ client = storage.Client()
+ with open(local_file, 'wb') as f:
+ print(f"==> Download {gcs_path} to {bin_file}", flush=True)
+ client.download_blob_to_file(gcs_path, f)
+ bin_file = local_file
+ delete_download = True
+ else:
+ assert bin_file.startswith(HF_PREFIX)
+ bin_filename = os.path.basename(bin_file)
+ local_file = os.path.join(model_dir, bin_filename)
+ with lock:
+ if not os.path.exists(local_file):
+ print(f"==> Download {model_name_or_path}/{bin_filename} to {local_file}", flush=True)
+ hf_hub_download(repo_id=model_name_or_path,
+ filename=bin_filename,
+ local_dir=model_dir,
+ local_dir_use_symlinks=False,
+ force_download=True)
+ bin_file = local_file
+ delete_download = True
+
+ torch.distributed.barrier()
+ print(f"==> Load {bin_file} to memory.", flush=True)
+ state = torch.load(bin_file, map_location="cpu")
+ for name, param in state.items():
+ yield name, param
+ torch.distributed.barrier()
+
+ if delete_download:
+ with lock:
+ if os.path.exists(bin_file):
+ print(f"==> Delete {bin_file}", flush=True)
+ os.remove(bin_file)
def load_tensor_parallel_weights(
@@ -1,87 +0,0 @@
# Dockerfile for basic serving dockers for vot.
#
# To build:
# docker build -f model_oss/vot/dockerfile/serving.Dockerfile . -t ${YOUR_IMAGE_TAG}
#
# To push to gcr:
# docker tag ${YOUR_IMAGE_TAG} gcr.io/${YOUR_PROJECT}/${YOUR_IMAGE_TAG}
# docker push gcr.io/${YOUR_PROJECT}/${YOUR_IMAGE_TAG}
# Switch to this base image for gpu serve.
FROM pytorch/torchserve:0.7.0-gpu
USER root
ENV infer_port=7080
ENV mng_port=7081
ENV model_name="vot_serving"
ENV PATH="/home/model-server/:${PATH}"
ENV PYTHONPATH "${PYTHONPATH}:/automl_vision/vot"
# Install libraries.
ENV PIP_ROOT_USER_ACTION=ignore
RUN python3 -m pip install --upgrade pip
RUN pip install accelerate==0.17.0
RUN pip install datasets==2.9.0
RUN pip install bytetracker==0.3.2
RUN pip install imageio[ffmpeg]==2.31.1
RUN pip install google-cloud-aiplatform==1.25.0
RUN pip install google-cloud-storage==2.9.0
RUN pip install fastapi==0.96.0
RUN pip install lap==0.4.0
RUN pip install numpy==1.24.3
RUN pip install opencv-python==4.7.0.72
RUN pip install Pillow==9.5.0
RUN pip install protobuf==3.19.6
RUN pip install pandas==2.0.2
RUN pip install pycocotools==2.0.6
RUN pip install scipy==1.10.1
RUN pip install tensorflow==2.11.1
RUN pip install torch==2.0.1
RUN pip install torchvision==0.15.2
RUN pip install triton==2.0.0.dev20221120
RUN pip install uvicorn==0.22.0
# Install tools.
RUN apt-get update && apt-get install -y --no-install-recommends \
curl \
wget \
vim
# Copy license.
RUN wget https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/main/LICENSE
# Copy model artifacts.
COPY model_oss/vot/handler.py /home/model-server/handler.py
COPY model_oss/vot/visualization_utils.py /home/model-server/vot/
COPY model_oss/util/ /home/model-server/util/
ENV PYTHONPATH /home/model-server/
# Create torchserve configuration file.
RUN echo \
"default_response_timeout=3600\n" \
"service_envelope=json\n" \
"inference_address=http://0.0.0.0:${infer_port}\n" \
"management_address=http://0.0.0.0:${mng_port}" >> /home/model-server/config.properties
# Expose ports.
EXPOSE ${infer_port}
EXPOSE ${mng_port}
# Archive model artifacts and dependencies.
# Do not set --model-file and --serialized-file because model and checkpoint will be dynamically loaded in handler.py.
RUN torch-model-archiver \
--model-name=${model_name} \
--version=1.0 \
--handler=/home/model-server/handler.py \
--runtime=python3 \
--export-path=/home/model-server/model-store \
--archive-format=default \
--force
# Run Torchserve HTTP serve to respond to prediction requests.
CMD ["torchserve", "--start", \
"--ts-config", "/home/model-server/config.properties", \
"--models", "${model_name}=${model_name}.mar", \
"--model-store", "/home/model-server/model-store"]
@@ -1,196 +0,0 @@
"""Custom handler for video object tracking models."""
import logging
import os
import tempfile
from typing import Any, List, Optional, Tuple
from bytetracker import BYTETracker
import cv2
from google.cloud import aiplatform
import imageio.v2 as iio
from PIL import Image
import tensorflow as tf
import torch
from ts.torch_handler.base_handler import BaseHandler
from util import commons
from util import fileutils
import visualization_utils
_VIDEO_URI = "video_uri"
_DATA = "data"
_TRACK_THRESHOLD = 0.45
_TRACK_BUFFER = 25
_MATCH_THRESHOLD = 0.8
class VideoObjectTrackingHandler(BaseHandler):
"""Custom handler for video object tracking models."""
def initialize(self, context: Any) -> None:
properties = context.system_properties
self.map_location = (
"cuda"
if torch.cuda.is_available() and properties.get("gpu_id") is not None
else "cpu"
)
self.device = torch.device(
self.map_location + ":" + str(properties.get("gpu_id"))
if torch.cuda.is_available() and properties.get("gpu_id") is not None
else self.map_location
)
self.manifest = context.manifest
detection_endpoint_id = os.environ.get("DETECTION_ENDPOINT", None)
if detection_endpoint_id:
self.detection_endpoint = aiplatform.Endpoint(detection_endpoint_id)
endpoint_label_map = os.environ.get("LABEL_MAP", None)
if endpoint_label_map:
endpoint_label_map_file = endpoint_label_map
self.label_map = commons.get_label_map(endpoint_label_map_file)
else:
raise ValueError(
"LABEL MAP must be provided with DETECTION ENDPOINT:"
f" {self.detection_endpoint}"
)
self.track_thresh = os.environ.get("TRACK_THRESHOLD", _TRACK_THRESHOLD)
self.track_buffer = os.environ.get("TRACK_BUFFER", _TRACK_BUFFER)
self.match_thresh = os.environ.get("MATCH_THRESHOLD", _MATCH_THRESHOLD)
self.save_video_results = bool(int(os.environ.get("SAVE_VIDEO_RESULTS", 0)))
self.output_bucket = os.environ.get("OUTPUT_BUCKET", None)
if not self.output_bucket:
raise ValueError("Empty Output Bucket.")
self.initialized = True
logging.info("Handler initialization done.")
def preprocess(
self, data: Any
) -> Tuple[Optional[List[str]], Optional[List[Image.Image]]]:
"""Preprocesses the input data.
Args:
data (Any): Input data.
Returns:
List of videos uris.
"""
video_uris = None
if _VIDEO_URI in data[0]:
video_uris = [item[_VIDEO_URI] for item in data]
# TorchServe's default handlers expect each instance
# to be wrapped in a data field for batch prediction.
if _DATA in data[0]:
video_uris = [item[_DATA][_VIDEO_URI] for item in data]
return video_uris
def inference(self, data: Any, *args, **kwargs) -> List[Any]:
"""Runs object detection and tracking inference on a video frame by frame.
If using yolo detection, the function uses the ultralytics yolo models for
IOD, otherwise it uses the provided IOD endpoint and associated the selected
tracking method to the detections.
Args:
data: List of video files.
*args: Additional arguments.
**kwargs: Additional keyword arguments.
Returns:
List of video frame annotations and/or output decorated video uris.
"""
gcs_video_files = data
video_preds = []
for gcs_video_file in gcs_video_files:
results_info = {}
temp_text_file = tempfile.NamedTemporaryFile(delete=False, mode="w+t")
local_video_file_name, remote_video_file_name = (
fileutils.download_video_from_gcs_to_local(gcs_video_file)
)
remote_text_file_name = remote_video_file_name.replace(
"overlay.mp4", "annotations.txt"
)
cap = cv2.VideoCapture(local_video_file_name)
fps = cap.get(cv2.CAP_PROP_FPS)
temp_local_video_file_name = fileutils.get_output_video_file(
local_video_file_name
)
if self.save_video_results:
self.video_writer = iio.get_writer(
temp_local_video_file_name,
format="FFMPEG",
mode="I",
fps=float(fps),
codec="h264",
)
self.tracker = BYTETracker(
track_thresh=self.track_thresh,
track_buffer=self.track_buffer,
match_thresh=self.match_thresh,
frame_rate=fps,
)
frame_idx = 1
while cap.isOpened():
ret, frame = cap.read()
if not ret:
break
dets_np = commons.get_object_detection_endpoint_predictions(
self.detection_endpoint, frame
)
dets_tf = tf.convert_to_tensor(dets_np)
online_targets = self.tracker.update(dets_tf, None)
if online_targets.size > 0:
frame = visualization_utils.overlay_tracking_results(
frame_idx,
frame,
online_targets,
label_map=self.label_map,
temp_text_file_path=temp_text_file.name,
)
frame = cv2.cvtColor(frame, cv2.COLOR_BGR2RGB)
if self.save_video_results:
self.video_writer.append_data(frame)
logging.info(
"Finished processing frame %s for video %s.",
frame_idx,
gcs_video_file,
)
frame_idx += 1
self.video_writer.close()
cap.release()
if self.save_video_results:
fileutils.upload_video_from_local_to_gcs(
self.output_bucket,
local_video_file_name,
remote_video_file_name,
temp_local_video_file_name,
)
results_info["output_video"] = "{}/{}".format(
self.output_bucket, remote_video_file_name
)
fileutils.release_text_assets(
self.output_bucket,
temp_text_file.name,
remote_text_file_name,
)
results_info["annotations"] = "{}/{}".format(
self.output_bucket, remote_text_file_name
)
video_preds.append(results_info)
return video_preds
def handle(self, data: Any, context: Any) -> List[Any]:
model_input = self.preprocess(data)
model_out = self.inference(model_input)
output = self.postprocess(model_out)
return output
def postprocess(self, inference_result: List[Any]) -> List[Any]:
return inference_result
@@ -1,168 +0,0 @@
"""Image and bounding box visualization util lib."""
from typing import Dict, List, Optional
import cv2
import numpy as np
from PIL import ImageColor
def draw_bounding_box_on_image(
image: np.ndarray,
ymin: float,
xmin: float,
ymax: float,
xmax: float,
color: str,
thickness: int = 4,
display_str_list: Optional[List[str]] = None,
) -> np.ndarray:
"""Draws a bounding box on an image.
Args:
image: The image to draw the bounding box on.
ymin: The minimum y-coordinate of the bounding box.
xmin: The minimum x-coordinate of the bounding box.
ymax: The maximum y-coordinate of the bounding box.
xmax: The maximum x-coordinate of the bounding box.
color: The color of the bounding box.
thickness: The thickness of the bounding box lines. Defaults to 4.
display_str_list: List of strings to display in new line inside the bounding
box.
Returns:
An image with a bounding box.
"""
color = ImageColor.getrgb(color)
cv2.rectangle(
image, (int(xmin), int(ymin)), (int(xmax), int(ymax)), color, thickness
)
# Display the strings below the bounding box
for i, display_str in enumerate(display_str_list):
font = cv2.FONT_HERSHEY_SIMPLEX
scale = 0.4
thickness = 1
text_width, text_height = cv2.getTextSize(
display_str, font, scale, thickness
)[0]
text_bottom = int(ymin - i * text_height)
text_left = int(xmin)
cv2.rectangle(
image,
(text_left, text_bottom - text_height),
(text_left + text_width, text_bottom),
color,
-1,
)
cv2.putText(
image,
display_str,
(text_left, text_bottom),
font,
scale,
(0, 0, 0),
thickness,
)
return image
def draw_boxes(
image: np.ndarray,
boxes: List[List[float]],
track_ids: List[int],
class_names: List[str],
scores: List[float],
max_boxes: int = 40,
min_score: float = 0.05,
) -> np.ndarray:
"""Overlays labeled boxes on an image with formatted scores and label names.
Args:
image: The image to overlay the boxes on.
boxes: List of bounding box coordinates [xmin, ymin, xmax, ymax].
track_ids: List of track IDs corresponding to each box.
class_names: List of class names corresponding to each box.
scores: List of scores corresponding to each box.
max_boxes: Maximum number of boxes to draw. Defaults to 40.
min_score: Minimum score threshold for displaying a box. Defaults to 0.05.
Returns:
PIL.Image.Image: The image with the labeled boxes overlay.
"""
colors = list(ImageColor.colormap.values())
for i in range(min(len(boxes), max_boxes)):
if scores[i] >= min_score:
xmin, ymin, xmax, ymax = boxes[i]
display_str = "{}-{}: {}%".format(
track_ids[i], class_names[i], int(100 * scores[i])
)
color = colors[hash(class_names[i]) % len(colors)]
image = draw_bounding_box_on_image(
image,
ymin,
xmin,
ymax,
xmax,
color,
display_str_list=[display_str],
)
return image
def overlay_tracking_results(
frame_idx: int,
image_np: np.ndarray,
tracker_outputs: np.ndarray,
model_names: Optional[Dict[int, str]] = None,
label_map: Optional[Dict[str, Dict[int, str]]] = None,
temp_text_file_path: Optional[str] = None,
) -> np.ndarray:
"""Overlays the results on the image.
Args:
frame_idx: frame index.
image_np: Input image.
tracker_outputs: Tracker outputs.
model_names: label map for yolo models.
label_map: label map for IOD detector model.
temp_text_file_path: tempfile to save annotations.
Returns:
Decorated output frame.
"""
dboxes = tracker_outputs[:, :4]
dtracks = tracker_outputs[:, 4]
dclasses = tracker_outputs[:, 5]
dscores = tracker_outputs[:, 6]
dclasses_as_text = []
for detection_class in dclasses:
if model_names:
dclasses_as_text.append(model_names[int(detection_class)])
elif label_map:
dclasses_as_text.append(label_map["label_map"][int(detection_class)])
else:
dclasses_as_text.append("")
plotted_img = np.array(
draw_boxes(
image=image_np,
boxes=dboxes,
track_ids=dtracks,
class_names=dclasses_as_text,
scores=dscores,
)
)
track_anno_list = []
for i, box in enumerate(dboxes):
result_list = [dtracks[i], dscores[i], dclasses[i]]
xyxy_anno = [np.round(item.item(), 2) for item in box]
tracks_anno = (
[frame_idx]
+ [np.round(item.item(), 2) for item in result_list]
+ xyxy_anno
)
track_anno_list.append(tracks_anno)
with open(temp_text_file_path, "a") as file:
file.write(", ".join([str(item) for item in tracks_anno]) + "\n")
return plotted_img
+1 -51
View File
@@ -33,7 +33,6 @@
/notebooks/community/cohere/cohere_embedding_with_matching_engine.ipynb @stewart-co
/notebooks/community/ml_ops/stage2/get_started_vertex_hpt_r_kernel.ipynb @fhirschmann
/notebooks/community/ml_ops/stage2/get_started_vertex_training_r_using_r_kernel.ipynb @fhirschmann
/notebooks/community/ml_ops/stage3/get_started_with_dataflow_flex_template_component.ipynb @wintwoo
/notebooks/community/vertex-ai-samples/notebooks/community/model_registry/vertex_ai_model_registry_bqml_custom_model_versioning.ipynb @inardini
/notebooks/community/vertex-ai-samples/notebooks/community/model_registry/vertex_ai_model_registry_automl_model_versioning.ipynb @inardini
/notebooks/community/vizier/conversions_vertex_vizier_and_open_source_vizier.ipynb @halio-g
@@ -41,53 +40,4 @@
/notebooks/community/pipelines/google_cloud_pipeline_components_bqml_pipeline_anomaly_detection.ipynb @inardini
/notebooks/community/pipelines/google_cloud_pipeline_components_cloud_natural_language_pipeline.ipynb @Narwhalprime
/notebooks/community/pipelines/google_cloud_pipeline_components_ready_to_go_text_classification_pipeline.ipynb @Narwhalprime
/notebooks/community/feature_store/get_started_vertex_feature_store.ipynb @junkourata
/notebooks/community/model_garden/model_garden_huggingface_local_inference.ipynb @dstnluong-google
/notebooks/community/model_garden/model_garden_mediapipe_face_stylizer.pynb @schmidt-sebastian
/notebooks/community/model_garden/model_garden_mediapipe_gesture_recognition.ipynb @schmidt-sebastian
/notebooks/community/model_garden/model_garden_mediapipe_image_classification.ipynb @schmidt-sebastian
/notebooks/community/model_garden/model_garden_mediapipe_image_generation.ipynb @schmidt-sebastian
/notebooks/community/model_garden/model_garden_mediapipe_object_detection.ipynb @schmidt-sebastian
/notebooks/community/model_garden/model_garden_mediapipe_text_classification.ipynb @schmidt-sebastian
/notebooks/community/model_garden/model_garden_proprietary_image_classification.ipynb @weigary
/notebooks/community/model_garden/model_garden_proprietary_image_object_detection.ipynb @weigary
/notebooks/community/model_garden/model_garden_tfvision_image_classification.ipynb @genquan9
/notebooks/community/model_garden/model_garden_tfvision_image_object_detection.ipynb @genquan9
/notebooks/community/model_garden/model_garden_tfvision_image_segmentation.ipynb @genquan9
/notebooks/community/model_garden/model_garden_pytorch_stable_diffusion.ipynb @xiangxu-google
/notebooks/community/model_garden/model_garden_pytorch_stable_diffusion_2_1.ipynb @bingatgoogle
/notebooks/community/model_garden/model_garden_pytorch_stable_diffusion_inpainting.ipynb @xiangxu-google
/notebooks/community/model_garden/model_garden_pytorch_stable_diffusion_xl_1_0.ipynb @bingatgoogle
/notebooks/community/model_garden/model_garden_pytorch_instructpix2pix.ipynb @xiangxu-google
/notebooks/community/model_garden/model_garden_pytorch_controlnet.ipynb @xiangxu-google
/notebooks/community/model_garden/model_garden_pytorch_blip_image_captioning.ipynb @xiangxu-google
/notebooks/community/model_garden/model_garden_pytorch_blip_vqa.ipynb @xiangxu-google
/notebooks/community/model_garden/model_garden_pytorch_vilt_vqa.ipynb @xiangxu-google
/notebooks/community/model_garden/model_garden_pytorch_vit_gpt2_image_captioning.ipynb @xiangxu-google
/notebooks/community/model_garden/model_garden_pytorch_clip.ipynb @xiangxu-google
/notebooks/community/model_garden/model_garden_pytorch_owlvit.ipynb @xiangxu-google
/notebooks/community/model_garden/model_garden_pytorch_layoutml_document_qa.ipynb @xiangxu-google
/notebooks/community/model_garden/model_garden_pytorch_blip2.ipynb @xiangxu-google
/notebooks/community/model_garden/model_garden_pytorch_detectron2.ipynb @lavraicse
/notebooks/community/model_garden/model_garden_pytorch_dolly_v2.ipynb @lavraicse
/notebooks/community/model_garden/model_garden_pytorch_bart_large_cnn.ipynb @lavraicse
/notebooks/community/model_garden/model_garden_pytorch_starcoder.ipynb @xcchen1
/notebooks/community/model_garden/model_garden_jax_vision_transformer.ipynb @lavraicse
/notebooks/community/model_garden/model_garden_jax_fvlm.ipynb @lavraicse
/notebooks/community/model_garden/model_garden_pytorch_text_to_video_zero_shot.ipynb @bingatgoogle
/notebooks/community/model_garden/model_garden_pytorch_text_to_video.ipynb @KCFindstr
/notebooks/community/generative_ai/text_embedding_api_cloud_next_new_models.ipynb @xqr-g
/notebooks/community/generative_ai/text_embedding_api_semantic_search_with_scann.ipynb @henrytansetiawan
/notebooks/community/bigquery_ml_inference/bq_ml_with_vision_translation_nlp.ipynb @deaconsmith
/notebooks/community/model_garden/model_garden_keras_stable_diffusion.ipynb @genquan9
/notebooks/community/model_garden/model_garden_keras_yolov8.ipynb @@dstnluong-google
/notebooks/community/model_garden/model_garden_pytorch_sam.ipynb @huguensjean
/notebooks/community/model_garden/model_garden_pytorch_pic2word.ipynb @jismailyan
/notebooks/community/model_garden/model_garden_pytorch_peft.ipynb @genquan9
/notebooks/community/model_garden/model_garden_pytorch_openllama_peft.ipynb @genquan9
/notebooks/community/model_garden/model_garden_pytorch_falcon_instruct_peft.ipynb @genquan9
/notebooks/community/model_garden/model_garden_movinet_clip_classification.ipynb @KCFindstr
/notebooks/community/model_garden/model_garden_movinet_action_recognition.ipynb @KCFindstr
/notebooks/community/model_garden/model_garden_pytorch_open_clip.ipynb @lydhr
/notebooks/community/model_garden/model_garden_pytorch_llama2_peft.ipynb @genquan9
/notebooks/community/model_garden/model_garden_pytorch_codellama.ipynb @xiangxu-google
-19
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@@ -1,19 +0,0 @@
[Unstructured data analytics with BigQuery ML and Vertex AI pre-trained models](https://github.com/GoogleCloudPlatform/vertex-ai-samples/blob/main/notebooks/community/bigquery_ml/bq_ml_with_vision_translation_nlp.ipynb)
```
Learn how to analyze unstructured data within BigQuery using BigQuery's inference engine. You will use BigQuery ML to connect to three pretrained Vertex AI APIs - Vision API, Translation API and Natural Language Processing API.
The steps performed include:
- Define pre-trained models for Vision AI, Translation AI and NLP AI in BigQuery ML
- Call the Vision API (`ML.ANNOTATE_IMAGE`) to detect text in images stored in Cloud Storage
You will need to create an object table in BigQuery to do this
- Call the Translation API (`ML.TRANSLATE`) to detect the language of text, and translate non-English movie titles to English
- Call the Natural Language API (`ML.UNDERSTAND_TEXT`) to run sentiment analysis over movie reviews stored in BigQuery
```
&nbsp;&nbsp;&nbsp;Check out the [blog for this notebook](https://cloud.google.com/blog/products/data-analytics/how-simplify-unstructured-data-analytics-using-bigquery-ml-and-vertex-ai).
&nbsp;&nbsp;&nbsp;Learn more about [BigQuery ML inference engine](https://cloud.google.com/bigquery/docs/reference/standard-sql/inference-overview).
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@@ -1,363 +0,0 @@
{
"cells": [
{
"cell_type": "markdown",
"metadata": {
"id": "view-in-github"
},
"source": [
"<a href=\"https://colab.research.google.com/github/xqr-g/vertex-ai-samples/blob/main/notebooks/community/generative_ai/text_embedding_api_cloud_next_new_models.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "KSP1duKDeaDR"
},
"outputs": [],
"source": [
"# Copyright 2023 Google LLC\n",
"#\n",
"# Licensed under the Apache License, Version 2.0 (the \"License\");\n",
"# you may not use this file except in compliance with the License.\n",
"# You may obtain a copy of the License at\n",
"#\n",
"# https://www.apache.org/licenses/LICENSE-2.0\n",
"#\n",
"# Unless required by applicable law or agreed to in writing, software\n",
"# distributed under the License is distributed on an \"AS IS\" BASIS,\n",
"# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n",
"# See the License for the specific language governing permissions and\n",
"# limitations under the License."
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "JAPoU8Sm5E6e"
},
"source": [
"# Cloud Next Embedding models\n",
"\n",
"\n",
"<table align=\"left\">\n",
"\n",
" <td>\n",
" <a href=\"https://colab.research.google.com/github/GoogleCloudPlatform/vertex-ai-samples/blob/main/notebooks/community/generative_ai/text_embedding_api_cloud_next_new_models.ipynb\">\n",
" <img src=\"https://cloud.google.com/ml-engine/images/colab-logo-32px.png\" alt=\"Colab logo\"> Run in Colab\n",
" </a>\n",
" </td>\n",
" <td>\n",
" <a href=\"https://github.com/GoogleCloudPlatform/vertex-ai-samples/blob/main/notebooks/community/generative_ai/text_embedding_api_cloud_next_new_models.ipynb\">\n",
" <img src=\"https://cloud.google.com/ml-engine/images/github-logo-32px.png\" alt=\"GitHub logo\">\n",
" View on GitHub\n",
" </a>\n",
" </td>\n",
" <td>\n",
" <a href=\"https://console.cloud.google.com/vertex-ai/workbench/deploy-notebook?download_url=https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/main/notebooks/community/generative_ai/text_embedding_api_cloud_next_new_models.ipynb\">\n",
" <img src=\"https://lh3.googleusercontent.com/UiNooY4LUgW_oTvpsNhPpQzsstV5W8F7rYgxgGBD85cWJoLmrOzhVs_ksK_vgx40SHs7jCqkTkCk=e14-rj-sc0xffffff-h130-w32\" alt=\"Vertex AI logo\">\n",
" Open in Vertex AI Workbench\n",
" </a>\n",
" </td> \n",
"</table>"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "24743cf4a1e1"
},
"source": [
"**_NOTE_**: This notebook has been tested in the following environment:\n",
"\n",
"* Python version = 3.10"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "tvgnzT1CKxrO"
},
"source": [
"## Overview\n",
"\n",
"This colab is used as a code example for how to call our newly released text embedding models (textembedding-gecko@latest and textembedding-gecko-multilingual@latest).\n",
"\n",
"Learn more about [text embedding api](https://cloud.google.com/vertex-ai/docs/generative-ai/embeddings/get-text-embeddings).\n",
"\n",
"This tutorial uses the following Google Cloud ML services and resources:\n",
"- Vertex LLM SDK\n",
"\n",
"The steps performed include:\n",
"- Installation and imports\n",
"- Generate embeddings\n"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "aed92deeb4a0"
},
"source": [
"### Costs\n",
"\n",
"This tutorial uses billable components of Google Cloud:\n",
"\n",
"* Vertex AI\n",
"\n",
"Learn about [Vertex AI pricing](https://cloud.google.com/vertex-ai/pricing),\n",
"and use the [Pricing Calculator](https://cloud.google.com/products/calculator/)\n",
"to generate a cost estimate based on your projected usage."
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "BF1j6f9HApxa"
},
"source": [
"## Before you begin\n",
"\n",
"### Set up your Google Cloud project\n",
"\n",
"**The following steps are required, regardless of your notebook environment.**\n",
"\n",
"1. [Select or create a Google Cloud project](https://console.cloud.google.com/cloud-resource-manager). When you first create an account, you get a $300 free credit towards your compute/storage costs.\n",
"\n",
"2. [Make sure that billing is enabled for your project](https://cloud.google.com/billing/docs/how-to/modify-project).\n",
"\n",
"3. [Enable the Vertex AI API](https://console.cloud.google.com/flows/enableapi?apiid=aiplatform.googleapis.com).\n",
"\n",
"4. If you are running this notebook locally, you need to install the [Cloud SDK](https://cloud.google.com/sdk)."
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "sBCra4QMA2wR"
},
"source": [
"### Authenticate your Google Cloud account\n",
"\n",
"Depending on your Jupyter environment, you may have to manually authenticate. Follow the relevant instructions below."
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "74ccc9e52986"
},
"source": [
"**1. Vertex AI Workbench**\n",
"* Do nothing as you are already authenticated."
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "de775a3773ba"
},
"source": [
"**2. Local JupyterLab instance, uncomment and run:**"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "254614fa0c46"
},
"outputs": [],
"source": [
"# ! gcloud auth login"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "ef21552ccea8"
},
"source": [
"**3. Colab, uncomment and run:**"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "603adbbf0532"
},
"outputs": [],
"source": [
"# from google.colab import auth\n",
"# auth.authenticate_user()"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "FyyMdUeAJIVv"
},
"source": [
"## Installation\n",
"\n",
"Install the following packages required to execute this notebook.\n",
"\n",
"**Remember to restart the runtime after installation.**"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "snBUuUamoJPz"
},
"outputs": [],
"source": [
"!pip install git+https://github.com/googleapis/python-aiplatform.git"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "WX3CHZitmSJM"
},
"source": [
"### Please restart the runtime."
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "dae340cb-0583-4e7e-a562-6817ee4d7f6d"
},
"source": [
"### Imports libraries"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "412d00f1-08db-4880-8ced-52a9583757b8"
},
"outputs": [],
"source": [
"import vertexai\n",
"from vertexai.language_models import TextEmbeddingInput, TextEmbeddingModel"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "MyMXIZoRlUcR"
},
"source": [
"#### Set your project ID and initiate Vertex AI\n",
"\n",
"**If you don't know your project ID**, try the following:\n",
"* Run `gcloud config list`.\n",
"* Run `gcloud projects list`.\n",
"* See the support page: [Locate the project ID](https://support.google.com/googleapi/answer/7014113)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "3EdtdqnoldX4"
},
"outputs": [],
"source": [
"PROJECT_ID = \"\" # @param {type:\"string\"}\n",
"REGION = \"us-central1\"\n",
"\n",
"# Set the project id\n",
"! gcloud config set project {PROJECT_ID}\n",
"\n",
"# Initiate Vertex AI\n",
"vertexai.init(project=PROJECT_ID, location=REGION)"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "f50f22f3-ec85-463e-b6fe-5c8e6b80b07b"
},
"source": [
"## Generate embeddings"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "hQZoBXNGjizH"
},
"outputs": [],
"source": [
"# Set the model name.\n",
"MODEL_NAME = \"textembedding-gecko@latest\" # @param [\"textembedding-gecko@latest\", \"textembedding-gecko-multilingual@latest\"]\n",
"\n",
"# Set the task_type, text and optional title as the model inputs.\n",
"TASK_TYPE = \"RETRIEVAL_DOCUMENT\" # @param [\"RETRIEVAL_QUERY\", \"RETRIEVAL_DOCUMENT\", \"SEMANTIC_SIMILARITY\", \"CLASSIFICATION\", \"CLUSTERING\"]\n",
"TITLE = \"Google\" # @param {type:\"string\"}\n",
"TEXT = \"Embed text.\" # @param {type:\"string\"}\n",
"\n",
"# Verify the input is valid.\n",
"if not MODEL_NAME:\n",
" raise ValueError(\"Please set MODEL_NAME.\")\n",
"if not TASK_TYPE:\n",
" raise ValueError(\"Please set TASK_TYPE.\")\n",
"if not TEXT:\n",
" raise ValueError(\"Please set TEXT.\")\n",
"if TITLE and TASK_TYPE != \"RETRIEVAL_DOCUMENT\":\n",
" raise ValueError(\"Title can only be provided if the task_type is RETRIEVAL_DOCUMENT\")"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "BNPapKXviHlE"
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"768\n"
]
}
],
"source": [
"def text_embedding(\n",
" model_name: str, task_type: str, text: str, title: str = \"\") -> list:\n",
" \"\"\"Generate text embedding with a Large Language Model.\"\"\"\n",
" model = TextEmbeddingModel.from_pretrained(model_name)\n",
"\n",
" text_embedding_input = TextEmbeddingInput(\n",
" task_type=task_type, title=title, text=text)\n",
" embeddings = model.get_embeddings([text_embedding_input])\n",
" return embeddings[0].values\n",
"\n",
"embedding = text_embedding(\n",
" model_name=MODEL_NAME, task_type=TASK_TYPE, text=TEXT, title=TITLE)\n",
"print(len(embedding))"
]
}
],
"metadata": {
"colab": {
"name": "text_embedding_api_cloud_next_new_models.ipynb",
"toc_visible": true
},
"kernelspec": {
"display_name": "Python 3",
"name": "python3"
}
},
"nbformat": 4,
"nbformat_minor": 0
}
@@ -1,373 +0,0 @@
{
"cells": [
{
"cell_type": "code",
"execution_count": null,
"id": "KSP1duKDeaDR",
"metadata": {
"id": "KSP1duKDeaDR"
},
"outputs": [],
"source": [
"# Copyright 2023 Google LLC\n",
"#\n",
"# Licensed under the Apache License, Version 2.0 (the \"License\");\n",
"# you may not use this file except in compliance with the License.\n",
"# You may obtain a copy of the License at\n",
"#\n",
"# https://www.apache.org/licenses/LICENSE-2.0\n",
"#\n",
"# Unless required by applicable law or agreed to in writing, software\n",
"# distributed under the License is distributed on an \"AS IS\" BASIS,\n",
"# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n",
"# See the License for the specific language governing permissions and\n",
"# limitations under the License."
]
},
{
"cell_type": "markdown",
"id": "67b2c5cc-8fc6-4082-9052-69fa0377d770",
"metadata": {
"id": "67b2c5cc-8fc6-4082-9052-69fa0377d770"
},
"source": [
"# Semantic Search using Embeddings\n",
"\n",
"Semantic search is a type of search that uses the meaning of words and phrases to find relevant results.\n",
"\n",
"In this tutorial, we will demonstrate how to do semantic search with embeddings generated from the news text and using [Google ScaNN: Efficient Vector Similarity Search](https://ai.googleblog.com/2020/07/announcing-scann-efficient-vector.html) to retrieve the most relevant news semantically.\n",
"\n",
"## Pre-requisites:\n",
"- Vertex LLM SDK\n",
"- ScaNN [github](https://github.com/google-research/google-research/tree/master/scann)"
]
},
{
"cell_type": "markdown",
"id": "FyyMdUeAJIVv",
"metadata": {
"id": "FyyMdUeAJIVv"
},
"source": [
"## Install Vertex LLM SDK\n",
"\n",
"DISCLAIMER: Text Embedding API is now in Experimental Preview. This release focuses on validating model prototypes and these models are not guaranteed to be released. Use of Text Embedding API is governed by the Google Cloud Terms of Service, the Pre-GA Offerings Terms of the GCP Service Specific Terms. The Acceptance Use Policy, and the Generative AI Prohibited Use Policy. Vertex Text Embedding API’s features may be unstable, change in backward-incompatible ways, and are not guaranteed to be released. There are no SLAs provided and no technical support obligations. GCP’s Cloud Data Processing Addendum does not apply to Pre-GA Offerings and customers should not use Text Embedding API to process personal data or other data subject to legal or regulatory compliance requirements. See description of launch stage for details.\n",
"\n",
"The information in this documentation is provided to the customer on an “as is” and “with all faults” basis without any warranty of any kind, either express or implied. Google does not warrant or guarantee the correctness, accuracy or reliability of the information in here. In no event will Google or its affiliates or licensors be liable for any damage or harm to customers from customer’s use of these materials."
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "h6KaE3XRJdxc",
"metadata": {
"id": "h6KaE3XRJdxc"
},
"outputs": [],
"source": [
"from google.colab import auth as google_auth\n",
"\n",
"google_auth.authenticate_user()"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "snBUuUamoJPz",
"metadata": {
"id": "snBUuUamoJPz"
},
"outputs": [],
"source": [
"!pip3 install google-cloud-aiplatform>=1.25 \"shapely<2.0.0\""
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "zgVQcE0ewO8W",
"metadata": {
"id": "zgVQcE0ewO8W"
},
"outputs": [],
"source": [
"PROJECT_ID = \"cloud-nl-llm-embedding\" # @param {type:\"string\"}\n",
"LOCATION = \"us-central1\" # @param {type:\"string\"}\n",
"\n",
"import vertexai\n",
"\n",
"vertexai.init(project=PROJECT_ID, location=LOCATION)"
]
},
{
"cell_type": "markdown",
"id": "4xFzXmPbY7FC",
"metadata": {
"id": "4xFzXmPbY7FC"
},
"source": [
"**Attention**: you would need to restart runtime so that the right package is installed."
]
},
{
"cell_type": "markdown",
"id": "xnfG88OPZI18",
"metadata": {
"id": "xnfG88OPZI18"
},
"source": [
"## Import TextEmbeddingModel"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "1e6e1b98-a632-44a2-afb8-fc212018ef4f",
"metadata": {
"id": "1e6e1b98-a632-44a2-afb8-fc212018ef4f"
},
"outputs": [],
"source": [
"from vertexai.preview.language_models import TextEmbeddingModel\n",
"\n",
"model = TextEmbeddingModel.from_pretrained(\"textembedding-gecko@001\")"
]
},
{
"cell_type": "markdown",
"id": "1suA-1HuaGj6",
"metadata": {
"id": "1suA-1HuaGj6"
},
"source": [
"## Install ScaNN Package"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "770255d3-54dd-48c8-bbdd-fbc0be41f085",
"metadata": {
"id": "770255d3-54dd-48c8-bbdd-fbc0be41f085"
},
"outputs": [],
"source": [
"!pip install scann"
]
},
{
"cell_type": "markdown",
"id": "dae340cb-0583-4e7e-a562-6817ee4d7f6d",
"metadata": {
"id": "dae340cb-0583-4e7e-a562-6817ee4d7f6d"
},
"source": [
"## Imports packages"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "412d00f1-08db-4880-8ced-52a9583757b8",
"metadata": {
"id": "412d00f1-08db-4880-8ced-52a9583757b8"
},
"outputs": [],
"source": [
"import json\n",
"import time\n",
"\n",
"import numpy as np\n",
"import pandas as pd\n",
"import scann"
]
},
{
"cell_type": "markdown",
"id": "f50f22f3-ec85-463e-b6fe-5c8e6b80b07b",
"metadata": {
"id": "f50f22f3-ec85-463e-b6fe-5c8e6b80b07b"
},
"source": [
"## Create Embedding Dataset.\n",
"\n",
"The dataset is solely to demonstrate the use of the Text Embedding API with a vector database. It is not intended to be used for any other purpose, such as evaluating models. The dataset is small and does not represent a comprehensive sample of all possible text."
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "2OUg-Qf8iFta",
"metadata": {
"id": "2OUg-Qf8iFta"
},
"outputs": [],
"source": [
"!gsutil cp gs://cloud-samples-data/vertex-ai/dataset-management/datasets/bert_finetuning/wide_and_deep_trainer_container_tests_input.jsonl ."
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "BNPapKXviHlE",
"metadata": {
"id": "BNPapKXviHlE"
},
"outputs": [],
"source": [
"records = []\n",
"with open(\"wide_and_deep_trainer_container_tests_input.jsonl\") as f:\n",
" for line in f:\n",
" record = json.loads(line)\n",
" records.append(record)"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "Z1Y9Bx2miJba",
"metadata": {
"id": "Z1Y9Bx2miJba"
},
"outputs": [],
"source": [
"# Peek at the data.\n",
"df = pd.DataFrame(records)\n",
"df.head(50)"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "1v7zUwoWiPl-",
"metadata": {
"id": "1v7zUwoWiPl-"
},
"outputs": [],
"source": [
"def get_embedding(text):\n",
" get_embedding.counter += 1\n",
" try:\n",
" if get_embedding.counter % 100 == 0:\n",
" time.sleep(3)\n",
" return model.get_embeddings([text])[0].values\n",
" except:\n",
" return []\n",
"\n",
"\n",
"get_embedding.counter = 0\n",
"\n",
"# This may take several minutes to complete.\n",
"df[\"embedding\"] = df[\"textContent\"].apply(lambda x: get_embedding(x))"
]
},
{
"cell_type": "markdown",
"id": "ba4f49b6-65e1-49ea-988b-c4e195219deb",
"metadata": {
"id": "ba4f49b6-65e1-49ea-988b-c4e195219deb"
},
"source": [
"## Create an Index"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "245bc8cd-038b-484a-acb2-3a705d4cc4cf",
"metadata": {
"id": "245bc8cd-038b-484a-acb2-3a705d4cc4cf"
},
"outputs": [],
"source": [
"record_count = len(records)\n",
"dataset = np.empty((record_count, 768))\n",
"for i in range(record_count):\n",
" dataset[i] = df.embedding[i]\n",
"\n",
"normalized_dataset = dataset / np.linalg.norm(dataset, axis=1)[:, np.newaxis]\n",
"# configure ScaNN as a tree - asymmetric hash hybrid with reordering\n",
"# anisotropic quantization as described in the paper; see README\n",
"\n",
"# use scann.scann_ops.build() to instead create a TensorFlow-compatible searcher\n",
"searcher = (\n",
" scann.scann_ops_pybind.builder(normalized_dataset, 10, \"dot_product\")\n",
" .tree(\n",
" num_leaves=record_count,\n",
" num_leaves_to_search=record_count,\n",
" training_sample_size=record_count,\n",
" )\n",
" .score_ah(2, anisotropic_quantization_threshold=0.2)\n",
" .reorder(100)\n",
" .build()\n",
")"
]
},
{
"cell_type": "markdown",
"id": "9f1689eb-c27c-4566-afc7-7fbc55552aad",
"metadata": {
"id": "9f1689eb-c27c-4566-afc7-7fbc55552aad"
},
"source": [
"## Queries the Index"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "494079df-d8f6-4a6a-b26b-0b0477791adc",
"metadata": {
"id": "494079df-d8f6-4a6a-b26b-0b0477791adc"
},
"outputs": [],
"source": [
"def search(query):\n",
" start = time.time()\n",
" query = model.get_embeddings([query])[0].values\n",
" neighbors, distances = searcher.search(query, final_num_neighbors=3)\n",
" end = time.time()\n",
"\n",
" for id, dist in zip(neighbors, distances):\n",
" print(f\"[docid:{id}] [{dist}] -- {df.textContent[int(id)][:125]}...\")\n",
" print(\"Latency (ms):\", 1000 * (end - start))"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "50497681-6112-4147-a13e-afedb72b54f5",
"metadata": {
"id": "50497681-6112-4147-a13e-afedb72b54f5"
},
"outputs": [],
"source": [
"search(\"tell me about shark or animal\")"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "c814f835-3e2a-4366-a334-ccc636f00b83",
"metadata": {
"id": "c814f835-3e2a-4366-a334-ccc636f00b83"
},
"outputs": [],
"source": [
"search(\"tell me about an important moment or event in your life\")"
]
}
],
"metadata": {
"colab": {
"name": "text_embedding_api_semantic_search_with_scann.ipynb",
"toc_visible": true
},
"kernelspec": {
"display_name": "Python 3",
"name": "python3"
}
},
"nbformat": 4,
"nbformat_minor": 0
}
@@ -560,30 +560,6 @@
" print(\"Service Account:\", SERVICE_ACCOUNT)"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "set_service_account:pipelines"
},
"source": [
"#### Set service account access for Vertex AI Pipelines\n",
"\n",
"Run the following commands to grant your service account access to read and write pipeline artifacts in the bucket that you created in the previous step -- you only need to run these once per service account."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "set_service_account:pipelines"
},
"outputs": [],
"source": [
"! gsutil iam ch serviceAccount:{SERVICE_ACCOUNT}:roles/storage.objectCreator $BUCKET_URI\n",
"\n",
"! gsutil iam ch serviceAccount:{SERVICE_ACCOUNT}:roles/storage.objectViewer $BUCKET_URI"
]
},
{
"cell_type": "markdown",
"metadata": {
@@ -557,30 +557,6 @@
" print(\"Service Account:\", SERVICE_ACCOUNT)"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "set_service_account:pipelines"
},
"source": [
"#### Set service account access for Vertex AI Pipelines\n",
"\n",
"Run the following commands to grant your service account access to read and write pipeline artifacts in the bucket that you created in the previous step -- you only need to run these once per service account."
]
},
{
"cell_type": "code",
"execution_count": 13,
"metadata": {
"id": "set_service_account:pipelines"
},
"outputs": [],
"source": [
"! gsutil iam ch serviceAccount:{SERVICE_ACCOUNT}:roles/storage.objectCreator $BUCKET_URI\n",
"\n",
"! gsutil iam ch serviceAccount:{SERVICE_ACCOUNT}:roles/storage.objectViewer $BUCKET_URI"
]
},
{
"cell_type": "markdown",
"metadata": {
@@ -196,7 +196,7 @@
" USER_FLAG = \"--user\"\n",
"\n",
"! pip3 install {USER_FLAG} --upgrade --quiet google-cloud-aiplatform \\\n",
" google-cloud-pipeline-components==1.0.25 \\\n",
" google-cloud-pipeline-components \\\n",
" kfp "
]
},
@@ -557,30 +557,6 @@
" print(\"Service Account:\", SERVICE_ACCOUNT)"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "set_service_account:pipelines"
},
"source": [
"#### Set service account access for Vertex AI Pipelines\n",
"\n",
"Run the following commands to grant your service account access to read and write pipeline artifacts in the bucket that you created in the previous step -- you only need to run these once per service account."
]
},
{
"cell_type": "code",
"execution_count": 13,
"metadata": {
"id": "set_service_account:pipelines"
},
"outputs": [],
"source": [
"! gsutil iam ch serviceAccount:{SERVICE_ACCOUNT}:roles/storage.objectCreator $BUCKET_URI\n",
"\n",
"! gsutil iam ch serviceAccount:{SERVICE_ACCOUNT}:roles/storage.objectViewer $BUCKET_URI"
]
},
{
"cell_type": "markdown",
"metadata": {
@@ -1,832 +0,0 @@
{
"cells": [
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "copyright"
},
"outputs": [],
"source": [
"# Copyright 2023 Google LLC\n",
"#\n",
"# Licensed under the Apache License, Version 2.0 (the \"License\");\n",
"# you may not use this file except in compliance with the License.\n",
"# You may obtain a copy of the License at\n",
"#\n",
"# https://www.apache.org/licenses/LICENSE-2.0\n",
"#\n",
"# Unless required by applicable law or agreed to in writing, software\n",
"# distributed under the License is distributed on an \"AS IS\" BASIS,\n",
"# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n",
"# See the License for the specific language governing permissions and\n",
"# limitations under the License."
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "title:generic,gcp"
},
"source": [
"# E2E ML on GCP: MLOps stage 3 : formalization: get started with the Dataflow Flex Template component\n",
"\n",
"<table align=\"left\">\n",
" <td>\n",
" <a href=\"https://github.com/GoogleCloudPlatform/vertex-ai-samples/blob/main/notebooks/community/ml_ops/stage3/get_started_with_dataflow_pipeline_components.ipynb\">\n",
" <img src=\"https://cloud.google.com/ml-engine/images/github-logo-32px.png\" alt=\"GitHub logo\">\n",
" View on GitHub\n",
" </a>\n",
" </td>\n",
" <td>\n",
" <a href=\"https://colab.research.google.com/github/GoogleCloudPlatform/vertex-ai-samples/blob/main/notebooks/community/ml_ops/stage3/get_started_with_dataflow_pipeline_components.ipynb\">\n",
"<img src=\"https://cloud.google.com/ml-engine/images/colab-logo-32px.png\" alt=\"Colab logo\"> \n",
" Run in Colab\n",
" </a>\n",
" </td>\n",
" <td>\n",
" <a href=\"https://console.cloud.google.com/vertex-ai/workbench/deploy-notebook?download_url=https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/main/notebooks/community/ml_ops/stage3/get_started_with_dataflow_pipeline_components.ipynb\">\n",
" <img src=\"https://lh3.googleusercontent.com/UiNooY4LUgW_oTvpsNhPpQzsstV5W8F7rYgxgGBD85cWJoLmrOzhVs_ksK_vgx40SHs7jCqkTkCk=e14-rj-sc0xffffff-h130-w32\" alt=\"Vertex AI logo\">\n",
" Open in Vertex AI Workbench\n",
" </a>\n",
" </td> \n",
" \n",
"</table>\n",
"<br/><br/><br/>"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "overview:mlops"
},
"source": [
"## Overview\n",
"\n",
"\n",
"This tutorial demonstrates how to use Vertex AI for E2E MLOps on Google Cloud in production. This tutorial covers stage 3 : formalization: get started with the Dataflow Flex Template component."
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "objective:mlops,stage3,get_started_dataflow_pipeline_components"
},
"source": [
"### Objective\n",
"\n",
"In this tutorial, you learn how to use prebuilt `Google Cloud Pipeline Components` to execute `Dataflow` [Flex Template](https://cloud.google.com/dataflow/docs/guides/templates/using-flex-templates) jobs.\n",
"\n",
"This tutorial uses the following Google Cloud ML services:\n",
"\n",
"- `Vertex AI Pipelines`\n",
"- `Google Cloud Pipeline Components`\n",
"- `Dataflow`\n",
"\n",
"The steps performed include:\n",
"\n",
"- Defining a pipeline step to execute a Dataflow Flex Template job within a Vertex AI pipeline.\n",
"- Execute a Vertex AI pipeline."
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "dataset:gsod,lrg"
},
"source": [
"### Dataset\n",
"\n",
"The dataset used for this tutorial is the sample data from the [Apache Beam Mobile Gaming Pipeline example](https://beam.apache.org/get-started/mobile-gaming-example/)."
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "0c997d8d92ce"
},
"source": [
"### Costs\n",
"\n",
"This tutorial uses billable components of Google Cloud:\n",
"\n",
"* Vertex AI\n",
"* Cloud Storage\n",
"* Dataflow\n",
"\n",
"Learn about [Vertex AI\n",
"pricing](https://cloud.google.com/vertex-ai/pricing), [Cloud Storage\n",
"pricing](https://cloud.google.com/storage/pricing), and [Dataflow pricing](https://cloud.google.com/dataflow/pricing)\n",
"and use the [Pricing\n",
"Calculator](https://cloud.google.com/products/calculator/)\n",
"to generate a cost estimate based on your projected usage."
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "install_mlops"
},
"source": [
"## Installations\n",
"\n",
"Install the required packages for executing the notebook."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "install_mlops"
},
"outputs": [],
"source": [
"import os\n",
"\n",
"# The Vertex AI Workbench Notebook product has specific requirements\n",
"IS_WORKBENCH_NOTEBOOK = os.getenv(\"DL_ANACONDA_HOME\")\n",
"IS_USER_MANAGED_WORKBENCH_NOTEBOOK = os.path.exists(\n",
" \"/opt/deeplearning/metadata/env_version\"\n",
")\n",
"\n",
"# Vertex AI Notebook requires dependencies to be installed with '--user'\n",
"USER_FLAG = \"\"\n",
"if IS_WORKBENCH_NOTEBOOK:\n",
" USER_FLAG = \"--user\"\n",
"\n",
"! pip3 install --pre --upgrade google-cloud-pipeline-components $USER_FLAG -q"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "restart"
},
"source": [
"### Restart the kernel\n",
"\n",
"Once you've installed the additional packages, you need to restart the notebook kernel so it can find the packages."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "restart"
},
"outputs": [],
"source": [
"import os\n",
"\n",
"if not os.getenv(\"IS_TESTING\"):\n",
" # Automatically restart kernel after installs\n",
" import IPython\n",
"\n",
" app = IPython.Application.instance()\n",
" app.kernel.do_shutdown(True)"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "BF1j6f9HApxa"
},
"source": [
"## Before you begin\n",
"\n",
"### Set up your Google Cloud project\n",
"\n",
"**The following steps are required, regardless of your notebook environment.**\n",
"\n",
"1. [Select or create a Google Cloud project](https://console.cloud.google.com/cloud-resource-manager). When you first create an account, you get a $300 free credit towards your compute/storage costs.\n",
"\n",
"1. [Make sure that billing is enabled for your project](https://cloud.google.com/billing/docs/how-to/modify-project).\n",
"\n",
"1. [Enable the Vertex AI API and Dataflow API](https://console.cloud.google.com/flows/enableapi?apiid=aiplatform.googleapis.com,dataflow.googleapis.com).\n",
"\n",
"1. If you are running this notebook locally, you need to install the [Cloud SDK](https://cloud.google.com/sdk).\n",
"\n",
"1. Enter your project ID in the cell below. Then run the cell to make sure the\n",
"Cloud SDK uses the right project for all the commands in this notebook.\n",
"\n",
"**Note**: Jupyter runs lines prefixed with `!` as shell commands, and it interpolates Python variables prefixed with `$` into these commands."
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "project_id"
},
"source": [
"#### Set your project ID\n",
"\n",
"**If you don't know your project ID**, you may be able to get your project ID using `gcloud`."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "set_project_id"
},
"outputs": [],
"source": [
"PROJECT_ID = \"[your-project-id]\" # @param {type:\"string\"}"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "autoset_project_id"
},
"outputs": [],
"source": [
"if PROJECT_ID == \"\" or PROJECT_ID is None or PROJECT_ID == \"[your-project-id]\":\n",
" # Get your GCP project id from gcloud\n",
" shell_output = ! gcloud config list --format 'value(core.project)' 2>/dev/null\n",
" PROJECT_ID = shell_output[0]\n",
" print(\"Project ID:\", PROJECT_ID)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "250cb8c648d5"
},
"outputs": [],
"source": [
"! gcloud config set project $PROJECT_ID"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "region"
},
"source": [
"#### Region\n",
"\n",
"You can also change the `REGION` variable, which is used for operations\n",
"throughout the rest of this notebook. Below are regions supported for Vertex AI. We recommend that you choose the region closest to you.\n",
"\n",
"- Americas: `us-central1`\n",
"- Europe: `europe-west4`\n",
"- Asia Pacific: `asia-east1`\n",
"\n",
"You may not use a multi-regional bucket for training with Vertex AI. Not all regions provide support for all Vertex AI services.\n",
"\n",
"Learn more about [Vertex AI regions](https://cloud.google.com/vertex-ai/docs/general/locations)."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "region"
},
"outputs": [],
"source": [
"REGION = \"[your-region]\" # @param {type: \"string\"}\n",
"\n",
"if REGION == \"[your-region]\":\n",
" REGION = \"us-central1\""
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "timestamp"
},
"source": [
"#### Timestamp\n",
"\n",
"If you are in a live tutorial session, you might be using a shared test account or project. To avoid name collisions between users on resources created, you create a timestamp for each instance session, and append the timestamp onto the name of resources you create in this tutorial."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "timestamp"
},
"outputs": [],
"source": [
"from datetime import datetime\n",
"\n",
"TIMESTAMP = datetime.now().strftime(\"%Y%m%d%H%M%S\")"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "927085b84a07"
},
"source": [
"### Authenticate your Google Cloud account\n",
"\n",
"**If you are using Vertex AI Workbench Notebooks**, your environment is already authenticated. Skip this step.\n",
"\n",
"**If you are using Colab**, run the cell below and follow the instructions when prompted to authenticate your account via oAuth.\n",
"\n",
"**Otherwise**, follow these steps:\n",
"\n",
"In the Cloud Console, go to the [Create service account key](https://console.cloud.google.com/apis/credentials/serviceaccountkey) page.\n",
"\n",
"**Click Create service account**.\n",
"\n",
"In the **Service account name** field, enter a name, and click **Create**.\n",
"\n",
"In the **Grant this service account access to project** section, click the Role drop-down list. Type \"Vertex\" into the filter box, and select **Vertex Administrator**. Type \"Storage Object Admin\" into the filter box, and select **Storage Object Admin**.\n",
"\n",
"Click Create. A JSON file that contains your key downloads to your local environment.\n",
"\n",
"Enter the path to your service account key as the GOOGLE_APPLICATION_CREDENTIALS variable in the cell below and run the cell."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "89788a802687"
},
"outputs": [],
"source": [
"# If you are running this notebook in Colab, run this cell and follow the\n",
"# instructions to authenticate your GCP account. This provides access to your\n",
"# Cloud Storage bucket and lets you submit training jobs and prediction\n",
"# requests.\n",
"\n",
"import os\n",
"import sys\n",
"\n",
"# If on Vertex AI Workbench, then don't execute this code\n",
"IS_COLAB = False\n",
"if not os.path.exists(\"/opt/deeplearning/metadata/env_version\") and not os.getenv(\n",
" \"DL_ANACONDA_HOME\"\n",
"):\n",
" if \"google.colab\" in sys.modules:\n",
" IS_COLAB = True\n",
" from google.colab import auth as google_auth\n",
"\n",
" google_auth.authenticate_user()\n",
"\n",
" # If you are running this notebook locally, replace the string below with the\n",
" # path to your service account key and run this cell to authenticate your GCP\n",
" # account.\n",
" elif not os.getenv(\"IS_TESTING\"):\n",
" %env GOOGLE_APPLICATION_CREDENTIALS ''"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "40ed98f5cc48"
},
"source": [
"#### If you are using Colab Notebooks, set the project using gcloud config."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "fde1a355f1e9"
},
"outputs": [],
"source": [
"if not os.path.exists(\"/opt/deeplearning/metadata/env_version\"):\n",
" if \"google.colab\" in sys.modules:\n",
" ! gcloud config set project $PROJECT_ID"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "bucket:mbsdk"
},
"source": [
"### Create a Cloud Storage bucket\n",
"\n",
"**The following steps are required, regardless of your notebook environment.**\n",
"\n",
"When you initialize the Vertex SDK for Python, you specify a Cloud Storage staging bucket. The staging bucket is where all the data associated with your dataset and model resources are retained across sessions.\n",
"\n",
"Set the name of your Cloud Storage bucket below. Bucket names must be globally unique across all Google Cloud projects, including those outside of your organization."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "bucket"
},
"outputs": [],
"source": [
"BUCKET_URI = \"gs://[your-bucket-name]\" # @param {type:\"string\"}"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "autoset_bucket"
},
"outputs": [],
"source": [
"if BUCKET_URI == \"\" or BUCKET_URI is None or BUCKET_URI == \"gs://[your-bucket-name]\":\n",
" BUCKET_URI = \"gs://\" + PROJECT_ID + \"aip-\" + TIMESTAMP"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "create_bucket"
},
"source": [
"**Only if your bucket doesn't already exist**: Run the following cell to create your Cloud Storage bucket."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "create_bucket"
},
"outputs": [],
"source": [
"! gsutil mb -l $REGION $BUCKET_URI"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "validate_bucket"
},
"source": [
"Finally, validate access to your Cloud Storage bucket by examining its contents:"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "validate_bucket"
},
"outputs": [],
"source": [
"! gsutil ls -al $BUCKET_URI"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "set_service_account"
},
"source": [
"#### Service Account\n",
"\n",
"**If you don't know your service account**, try to get your service account using `gcloud` command by executing the second cell below."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "set_service_account"
},
"outputs": [],
"source": [
"SERVICE_ACCOUNT = \"[your-service-account]\" # @param {type:\"string\"}"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "autoset_service_account"
},
"outputs": [],
"source": [
"if (\n",
" SERVICE_ACCOUNT == \"\"\n",
" or SERVICE_ACCOUNT is None\n",
" or SERVICE_ACCOUNT == \"[your-service-account]\"\n",
"):\n",
" # Get your service account from gcloud\n",
" if not IS_COLAB:\n",
" shell_output = !gcloud auth list 2>/dev/null\n",
" SERVICE_ACCOUNT = shell_output[2].replace(\"*\", \"\").strip()\n",
"\n",
" if IS_COLAB:\n",
" shell_output = ! gcloud projects describe $PROJECT_ID\n",
" project_number = shell_output[-1].split(\":\")[1].strip().replace(\"'\", \"\")\n",
" SERVICE_ACCOUNT = f\"{project_number}-compute@developer.gserviceaccount.com\"\n",
"\n",
" print(\"Service Account:\", SERVICE_ACCOUNT)"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "set_service_account:pipelines"
},
"source": [
"#### Set service account access for Vertex AI Pipelines\n",
"\n",
"Run the following commands to grant your service account access to read and write pipeline artifacts in the bucket that you created in the previous step -- you only need to run these once per service account."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "set_service_account:pipelines"
},
"outputs": [],
"source": [
"! gsutil iam ch serviceAccount:{SERVICE_ACCOUNT}:roles/storage.objectCreator $BUCKET_URI\n",
"\n",
"! gsutil iam ch serviceAccount:{SERVICE_ACCOUNT}:roles/storage.objectViewer $BUCKET_URI"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "setup_vars"
},
"source": [
"### Set up variables\n",
"\n",
"Next, set up some variables used throughout the tutorial.\n",
"### Import libraries and define constants"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "import_aip:mbsdk"
},
"outputs": [],
"source": [
"import google.cloud.aiplatform as aip\n",
"from google_cloud_pipeline_components.experimental.dataflow import \\\n",
" DataflowFlexTemplateJobOp\n",
"from google_cloud_pipeline_components.v1.wait_gcp_resources import \\\n",
" WaitGcpResourcesOp\n",
"from kfp import dsl\n",
"from kfp.v2 import compiler"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "init_aip:mbsdk"
},
"source": [
"### Initialize Vertex AI SDK for Python\n",
"\n",
"Initialize the Vertex AI SDK for Python for your project and corresponding bucket."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "init_aip:mbsdk"
},
"outputs": [],
"source": [
"aip.init(project=PROJECT_ID, staging_bucket=BUCKET_URI)"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "writefile:wc.py"
},
"source": [
"### Prepare a Flex Template job to convert a CSV file to Parquet\n",
"\n",
"In this tutorial, you use the Google-provided [File Format Conversion template](https://cloud.google.com/dataflow/docs/guides/templates/provided/file-format-conversion) to convert a CSV file to Parquet format."
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "writefile:requirements,wc"
},
"source": [
"#### Create the Avro schema file\n",
"\n",
"First, create an Avro schema file that describes the example data."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "writefile:requirements,wc"
},
"outputs": [],
"source": [
"%%writefile gaming_schema.avsc\n",
"\n",
"{\n",
" \"type\" : \"record\",\n",
" \"name\" : \"user_score\",\n",
" \"fields\" : [\n",
" { \"name\" : \"user\" , \"type\" : \"string\" },\n",
" { \"name\" : \"team\" , \"type\" : \"string\" },\n",
" { \"name\" : \"score\" , \"type\" : \"int\" },\n",
" { \"name\" : \"ts_epoch\" , \"type\" : \"long\" },\n",
" { \"name\" : \"ts_str\" , \"type\" : \"string\" }\n",
" ]\n",
"}"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "copy_to_gcs:wc"
},
"source": [
"#### Copy the Avro schema file to Cloud Storage\n",
"\n",
"Next, you copy the Avro schema file to your Cloud Storage bucket.\n",
"\n",
"Additional, you set the following:\n",
"\n",
"- The Cloud Storage location of the Flex Template definition file. In this tutorial, you use the location of the File Conversion template.\n",
"- A `Dict` containing the user parameters required by the Flex Template. These parameters include:\n",
"\n",
" - `inputFileFormat`: The file format of the input files.\n",
" - `outputFileFormat`: The file format of the output files.\n",
" - `inputFileSpec`: The input filepattern to read from.\n",
" - `outputBucket`: The Cloud Storage path to write the output files.\n",
" - `schema`: The Cloud Storage path top the avro schema file used for the conversion.\n"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "copy_to_gcs:wc"
},
"outputs": [],
"source": [
"GCS_AVRO_SCHEMA = BUCKET_URI + \"/gaming_schema.avsc\"\n",
"! gsutil cp gaming_schema.avsc $GCS_AVRO_SCHEMA\n",
"\n",
"GCS_FLEX_TEMPLATE_PATH = \"gs://dataflow-templates/latest/flex/File_Format_Conversion\"\n",
"GCS_CONVERT_IN = \"gs://dataflow-samples/game/5000_gaming_data.csv\"\n",
"GCS_CONVERT_OUT = BUCKET_URI + \"/parquet_out/\"\n",
"\n",
"TEMPLATE_PARAMETERS = {\n",
" \"inputFileFormat\": \"csv\",\n",
" \"outputFileFormat\": \"parquet\",\n",
" \"inputFileSpec\": GCS_CONVERT_IN,\n",
" \"outputBucket\": GCS_CONVERT_OUT,\n",
" \"schema\": GCS_AVRO_SCHEMA,\n",
"}"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "create_dataflow_pipeline:wc"
},
"source": [
"### Create and execute the pipeline job\n",
"\n",
"In this example, the `DataflowFlexTemplateJobOp` component takes the following parameters:\n",
"\n",
"- `project_id`: The project ID.\n",
"- `location`: The region.\n",
"- `container_spec_gcs_path`: The Cloud Storage path to a file that contains the Flex Template definition. This file contains a json serialized `ContainerSpec` as content.\n",
"- `temp_location`: The Cloud Storage path to use for temporary files.\n",
"- `parameters`: The parameters for the Flex Template.\n",
"\n",
"Learn more about [Google Cloud Pipeline Components for Dataflow](https://google-cloud-pipeline-components.readthedocs.io/en/google-cloud-pipeline-components-2.0.0b2/google_cloud_pipeline_components.experimental.dataflow.html)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "create_dataflow_pipeline:wc"
},
"outputs": [],
"source": [
"PIPELINE_ROOT = \"{}/pipeline_root/dataflow_file_conversion\".format(BUCKET_URI)\n",
"\n",
"\n",
"@dsl.pipeline(\n",
" name=\"dataflow-file-conversion\", description=\"Dataflow file format conversion\"\n",
")\n",
"def pipeline(\n",
" project_id: str = PROJECT_ID,\n",
" location: str = REGION,\n",
" container_spec_gcs_path: str = GCS_FLEX_TEMPLATE_PATH,\n",
" temp_location: str = PIPELINE_ROOT,\n",
" parameters: dict = TEMPLATE_PARAMETERS,\n",
"):\n",
" flex_template_op = DataflowFlexTemplateJobOp(\n",
" project=project_id,\n",
" location=location,\n",
" container_spec_gcs_path=container_spec_gcs_path,\n",
" temp_location=temp_location,\n",
" parameters=parameters,\n",
" )\n",
"\n",
" _ = WaitGcpResourcesOp(gcp_resources=flex_template_op.outputs[\"gcp_resources\"])\n",
"\n",
"\n",
"compiler.Compiler().compile(\n",
" pipeline_func=pipeline, package_path=\"dataflow_file_conversion.yaml\"\n",
")\n",
"\n",
"pipeline = aip.PipelineJob(\n",
" display_name=\"dataflow_file_conversion\",\n",
" template_path=\"dataflow_file_conversion.yaml\",\n",
" pipeline_root=PIPELINE_ROOT,\n",
" enable_caching=False,\n",
")\n",
"\n",
"pipeline.run()\n",
"\n",
"! gsutil ls $GCS_CONVERT_OUT\n",
"\n",
"! rm -f dataflow_file_conversion.yaml gaming_schema.avsc"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "delete_pipeline"
},
"source": [
"### Delete a pipeline job\n",
"\n",
"After a pipeline job is completed, you can delete the pipeline job with the method `delete()`. Prior to completion, a pipeline job can be canceled with the method `cancel()`."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "delete_pipeline"
},
"outputs": [],
"source": [
"pipeline.delete()"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "cleanup:mbsdk"
},
"source": [
"# Cleaning up\n",
"\n",
"To clean up all Google Cloud resources used in this project, you can [delete the Google Cloud\n",
"project](https://cloud.google.com/resource-manager/docs/creating-managing-projects#shutting_down_projects) you used for the tutorial.\n",
"\n",
"Otherwise, you can delete the individual resources you created in this tutorial:\n",
"\n",
"- Dataset\n",
"- Cloud Storage Bucket"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "cleanup:mbsdk"
},
"outputs": [],
"source": [
"# Warning: Setting this to true will delete everything in your bucket\n",
"delete_bucket = False\n",
"\n",
"if delete_bucket or os.getenv(\"IS_TESTING\"):\n",
" ! gsutil rm -r $BUCKET_URI"
]
}
],
"metadata": {
"colab": {
"name": "get_started_with_dataflow_flex_template_component.ipynb",
"toc_visible": true
},
"kernelspec": {
"display_name": "Python 3",
"name": "python3"
}
},
"nbformat": 4,
"nbformat_minor": 0
}
@@ -1333,6 +1333,7 @@
"Next, you compile the pipeline and then exeute it. The pipeline takes the following parameters, which are passed as the dictionary `parameter_values`:\n",
"\n",
"- `display_name`: A human readable name for the pipeline job.\n",
"- `import_file`: The Cloud Storage location to the dataset.\n",
"- `worker_pool_specs`: The the machine and container, and auto-scaling requirements, as well as command line arguments.\n",
"- `study_spec_metrics`: The metrics to optimize in the study trials.\n",
"- `study_spec_parameters`: The parameters to tune."
@@ -29,22 +29,22 @@
"id": "title:generic,gcp"
},
"source": [
"# Get started with Vertex ML Metadata\n",
"# E2E ML on GCP: MLOps stage 4 : formalization: get started with Vertex ML Metadata\n",
"\n",
"<table align=\"left\">\n",
" <td>\n",
" <a href=\"https://colab.research.google.com/github/GoogleCloudPlatform/vertex-ai-samples/blob/main/notebooks/official/ml_metadata/get_started_with_vertex_ml_metadata.ipynb\">\n",
" <a href=\"https://colab.research.google.com/github/GoogleCloudPlatform/vertex-ai-samples/blob/main/notebooks/community/ml_ops/stage4/get_started_with_vertex_ml_metadata.ipynb\">\n",
" <img src=\"https://cloud.google.com/ml-engine/images/colab-logo-32px.png\" alt=\"Colab logo\"> Run in Colab\n",
" </a>\n",
" </td>\n",
" <td>\n",
" <a href=\"https://github.com/GoogleCloudPlatform/vertex-ai-samples/blob/main/notebooks/official/ml_metadata/get_started_with_vertex_ml_metadata.ipynb\">\n",
" <a href=\"https://github.com/GoogleCloudPlatform/vertex-ai-samples/blob/main/notebooks/community/ml_ops/stage4/get_started_with_vertex_ml_metadata.ipynb\">\n",
" <img src=\"https://cloud.google.com/ml-engine/images/github-logo-32px.png\" alt=\"GitHub logo\">\n",
" View on GitHub\n",
" </a>\n",
" </td>\n",
" <td>\n",
" <a href=\"https://console.cloud.google.com/vertex-ai/workbench/deploy-notebook?download_url=https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/main/notebooks/official/ml_metadata/get_started_with_vertex_ml_metadata.ipynb\">\n",
" <a href=\"https://console.cloud.google.com/vertex-ai/workbench/deploy-notebook?download_url=https://raw.githubusercontent.com/GoogleCloudPlatform/vertex-ai-samples/main/notebooks/community/ml_ops/stage4/get_started_with_vertex_ml_metadata.ipynb\">\n",
" <img src=\"https://lh3.googleusercontent.com/UiNooY4LUgW_oTvpsNhPpQzsstV5W8F7rYgxgGBD85cWJoLmrOzhVs_ksK_vgx40SHs7jCqkTkCk=e14-rj-sc0xffffff-h130-w32\" alt=\"Vertex AI logo\">\n",
" Open in Vertex AI Workbench\n",
" </a>\n",
@@ -62,9 +62,7 @@
"## Overview\n",
"\n",
"\n",
"This tutorial demonstrates how to use Vertex ML Metadata.\n",
"\n",
"Learn more about [Vertex ML Metadata](https://cloud.google.com/vertex-ai/docs/ml-metadata)."
"This tutorial demonstrates how to use Vertex AI for E2E MLOps on Google Cloud in production. This tutorial covers stage 4 : formalization: get started with Vertex ML Metadata."
]
},
{
@@ -146,32 +144,19 @@
"source": [
"import os\n",
"\n",
"! pip3 install --upgrade google-cloud-aiplatform[tensorboard] \\\n",
" google-cloud-pipeline-components --quiet"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "restart"
},
"source": [
"### Colab only: Uncomment the following cell to restart the kernel"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "D-ZBOjErv5mM"
},
"outputs": [],
"source": [
"# Automatically restart kernel after installs so that your environment can access the new packages\n",
"# import IPython\n",
"# The Vertex AI Workbench Notebook product has specific requirements\n",
"IS_WORKBENCH_NOTEBOOK = os.getenv(\"DL_ANACONDA_HOME\")\n",
"IS_USER_MANAGED_WORKBENCH_NOTEBOOK = os.path.exists(\n",
" \"/opt/deeplearning/metadata/env_version\"\n",
")\n",
"\n",
"# app = IPython.Application.instance()\n",
"# app.kernel.do_shutdown(True)"
"# Vertex AI Notebook requires dependencies to be installed with '--user'\n",
"USER_FLAG = \"\"\n",
"if IS_WORKBENCH_NOTEBOOK:\n",
" USER_FLAG = \"--user\"\n",
"\n",
"! pip3 install --upgrade google-cloud-aiplatform[tensorboard] $USER_FLAG -q\n",
"! pip3 install --upgrade google-cloud-pipeline-components $USER_FLAG -q"
]
},
{
@@ -186,26 +171,62 @@
]
},
{
"cell_type": "markdown",
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "before_you_begin"
"id": "restart"
},
"outputs": [],
"source": [
"## Before you begin"
"import os\n",
"\n",
"if not os.getenv(\"IS_TESTING\"):\n",
" # Automatically restart kernel after installs\n",
" import IPython\n",
"\n",
" app = IPython.Application.instance()\n",
" app.kernel.do_shutdown(True)"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "before_you_begin:nogpu"
"id": "before_you_begin"
},
"source": [
"### Set your project ID\n",
"## Before you begin\n",
"\n",
"**If you don't know your project ID**, try the following:\n",
"* Run `gcloud config list`.\n",
"* Run `gcloud projects list`.\n",
"* See the support page: [Locate the project ID](https://support.google.com/googleapi/answer/7014113)"
"### GPU runtime\n",
"\n",
"*Make sure you're running this notebook in a GPU runtime if you have that option. In Colab, select* **Runtime > Change Runtime Type > GPU**\n",
"\n",
"### Set up your Google Cloud project\n",
"\n",
"**The following steps are required, regardless of your notebook environment.**\n",
"\n",
"1. [Select or create a Google Cloud project](https://console.cloud.google.com/cloud-resource-manager). When you first create an account, you get a $300 free credit towards your compute/storage costs.\n",
"\n",
"2. [Make sure that billing is enabled for your project.](https://cloud.google.com/billing/docs/how-to/modify-project)\n",
"\n",
"3. [Enable the following APIs: Vertex AI APIs, Compute Engine APIs, and Cloud Storage.](https://console.cloud.google.com/flows/enableapi?apiid=aiplatform.googleapis.com,compute_component,storage-component.googleapis.com)\n",
"\n",
"4. If you are running this notebook locally, you need to install the [Cloud SDK]((https://cloud.google.com/sdk)).\n",
"\n",
"5. Enter your project ID in the cell below. Then run the cell to make sure the\n",
"Cloud SDK uses the right project for all the commands in this notebook.\n",
"\n",
"**Note**: Jupyter runs lines prefixed with `!` as shell commands, and it interpolates Python variables prefixed with `$`."
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "project_id"
},
"source": [
"#### Set your project ID\n",
"\n",
"**If you don't know your project ID**, you may be able to get your project ID using `gcloud`."
]
},
{
@@ -216,10 +237,33 @@
},
"outputs": [],
"source": [
"PROJECT_ID = \"[your-project-id]\" # @param {type:\"string\"}\n",
"\n",
"# Set the project id\n",
"! gcloud config set project {PROJECT_ID}"
"PROJECT_ID = \"[your-project-id]\" # @param {type:\"string\"}"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "autoset_project_id"
},
"outputs": [],
"source": [
"if PROJECT_ID == \"\" or PROJECT_ID is None or PROJECT_ID == \"[your-project-id]\":\n",
" # Get your GCP project id from gcloud\n",
" shell_output = ! gcloud config list --format 'value(core.project)' 2>/dev/null\n",
" PROJECT_ID = shell_output[0]\n",
" print(\"Project ID:\", PROJECT_ID)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "set_gcloud_project_id"
},
"outputs": [],
"source": [
"! gcloud config set project $PROJECT_ID"
]
},
{
@@ -230,7 +274,16 @@
"source": [
"#### Region\n",
"\n",
"You can also change the `REGION` variable used by Vertex AI. Learn more about [Vertex AI regions](https://cloud.google.com/vertex-ai/docs/general/locations)."
"You can also change the `REGION` variable, which is used for operations\n",
"throughout the rest of this notebook. Below are regions supported for Vertex AI. We recommend that you choose the region closest to you.\n",
"\n",
"- Americas: `us-central1`\n",
"- Europe: `europe-west4`\n",
"- Asia Pacific: `asia-east1`\n",
"\n",
"You may not use a multi-regional bucket for training with Vertex AI. Not all regions provide support for all Vertex AI services.\n",
"\n",
"Learn more about [Vertex AI regions](https://cloud.google.com/vertex-ai/docs/general/locations)."
]
},
{
@@ -241,7 +294,34 @@
},
"outputs": [],
"source": [
"REGION = \"us-central1\" # @param {type: \"string\"}"
"REGION = \"[your-region]\" # @param {type: \"string\"}\n",
"\n",
"if REGION == \"[your-region]\":\n",
" REGION = \"us-central1\""
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "timestamp"
},
"source": [
"#### Timestamp\n",
"\n",
"If you are in a live tutorial session, you might be using a shared test account or project. To avoid name collisions between users on resources created, you create a timestamp for each instance session, and append the timestamp onto the name of resources you create in this tutorial."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "timestamp"
},
"outputs": [],
"source": [
"from datetime import datetime\n",
"\n",
"TIMESTAMP = datetime.now().strftime(\"%Y%m%d%H%M%S\")"
]
},
{
@@ -252,70 +332,57 @@
"source": [
"### Authenticate your Google Cloud account\n",
"\n",
"Depending on your Jupyter environment, you may have to manually authenticate. Follow the relevant instructions below."
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "FvQeFm3Gv5mR"
},
"source": [
"**1. Vertex AI Workbench**\n",
"* Do nothing as you are already authenticated."
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "ad1138a125ea"
},
"source": [
"**2. Local JupyterLab instance, uncomment and run:**"
"**If you are using Vertex AI Workbench Notebooks**, your environment is already authenticated. Skip this step.\n",
"\n",
"**If you are using Colab**, run the cell below and follow the instructions when prompted to authenticate your account via oAuth.\n",
"\n",
"**Otherwise**, follow these steps:\n",
"\n",
"In the Cloud Console, go to the [Create service account key](https://console.cloud.google.com/apis/credentials/serviceaccountkey) page.\n",
"\n",
"**Click Create service account**.\n",
"\n",
"In the **Service account name** field, enter a name, and click **Create**.\n",
"\n",
"In the **Grant this service account access to project** section, click the Role drop-down list. Type \"Vertex\" into the filter box, and select **Vertex Administrator**. Type \"Storage Object Admin\" into the filter box, and select **Storage Object Admin**.\n",
"\n",
"Click Create. A JSON file that contains your key downloads to your local environment.\n",
"\n",
"Enter the path to your service account key as the GOOGLE_APPLICATION_CREDENTIALS variable in the cell below and run the cell."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "ce6043da7b33"
},
"outputs": [],
"source": [
"# ! gcloud auth login"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "0367eac06a10"
},
"source": [
"**3. Colab, uncomment and run:**"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "21ad4dbb4a61"
"id": "gcp_authenticate"
},
"outputs": [],
"source": [
"# If you are running this notebook in Colab, run this cell and follow the\n",
"# instructions to authenticate your GCP account. This provides access to your\n",
"# Cloud Storage bucket and lets you submit training jobs and prediction\n",
"# requests.\n",
"\n",
"import os\n",
"import sys\n",
"\n",
"# If on Vertex AI Workbench, then don't execute this code\n",
"IS_COLAB = False\n",
"# from google.colab import auth\n",
"# auth.authenticate_user()\n",
"# IS_COLAB = True"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "c13224697bfb"
},
"source": [
"**4. Service account or other**\n",
"* See how to grant Cloud Storage permissions to your service account at https://cloud.google.com/storage/docs/gsutil/commands/iam#ch-examples."
"if not os.path.exists(\"/opt/deeplearning/metadata/env_version\") and not os.getenv(\n",
" \"DL_ANACONDA_HOME\"\n",
"):\n",
" if \"google.colab\" in sys.modules:\n",
" IS_COLAB = True\n",
" from google.colab import auth as google_auth\n",
"\n",
" google_auth.authenticate_user()\n",
"\n",
" # If you are running this notebook locally, replace the string below with the\n",
" # path to your service account key and run this cell to authenticate your GCP\n",
" # account.\n",
" elif not os.getenv(\"IS_TESTING\"):\n",
" %env GOOGLE_APPLICATION_CREDENTIALS ''"
]
},
{
@@ -326,7 +393,11 @@
"source": [
"### Create a Cloud Storage bucket\n",
"\n",
"Create a storage bucket to store intermediate artifacts such as datasets."
"**The following steps are required, regardless of your notebook environment.**\n",
"\n",
"When you initialize the Vertex SDK for Python, you specify a Cloud Storage staging bucket. The staging bucket is where all the data associated with your dataset and model resources are retained across sessions.\n",
"\n",
"Set the name of your Cloud Storage bucket below. Bucket names must be globally unique across all Google Cloud projects, including those outside of your organization."
]
},
{
@@ -337,7 +408,21 @@
},
"outputs": [],
"source": [
"BUCKET_URI = f\"gs://your-bucket-name-{PROJECT_ID}-unique\" # @param {type:\"string\"}"
"BUCKET_NAME = \"[your-bucket-name]\" # @param {type:\"string\"}\n",
"BUCKET_URI = f\"gs://{BUCKET_NAME}\""
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "autoset_bucket"
},
"outputs": [],
"source": [
"if BUCKET_NAME == \"\" or BUCKET_NAME is None or BUCKET_NAME == \"[your-bucket-name]\":\n",
" BUCKET_NAME = PROJECT_ID + \"aip-\" + TIMESTAMP\n",
" BUCKET_URI = \"gs://\" + BUCKET_NAME"
]
},
{
@@ -360,6 +445,26 @@
"! gsutil mb -l $REGION $BUCKET_URI"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "validate_bucket"
},
"source": [
"Finally, validate access to your Cloud Storage bucket by examining its contents:"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "validate_bucket"
},
"outputs": [],
"source": [
"! gsutil ls -al $BUCKET_URI"
]
},
{
"cell_type": "markdown",
"metadata": {
@@ -440,7 +545,19 @@
"source": [
"### Set up variables\n",
"\n",
"Next, set up some variables used throughout the tutorial."
"Next, set up some variables used throughout the tutorial.\n",
"### Import libraries and define constants"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "import_aip:mbsdk"
},
"outputs": [],
"source": [
"import google.cloud.aiplatform as aip"
]
},
{
@@ -462,10 +579,7 @@
},
"outputs": [],
"source": [
"from datetime import datetime\n",
"\n",
"import google.cloud.aiplatform_v1beta1 as aip_beta\n",
"from google.cloud import aiplatform"
"import google.cloud.aiplatform_v1beta1 as aip_beta"
]
},
{
@@ -593,7 +707,7 @@
"outputs": [],
"source": [
"metadata_store = clients[\"metadata\"].create_metadata_store(\n",
" parent=PARENT, metadata_store_id=\"my-metadata-store-unique\"\n",
" parent=PARENT, metadata_store_id=\"my-metadata-store\"\n",
")\n",
"\n",
"metadata_store_id = str(metadata_store.result())[7:-2]\n",
@@ -1030,7 +1144,7 @@
"source": [
"from kfp.v2 import compiler, dsl\n",
"from kfp.v2.dsl import (Artifact, Dataset, Input, Metrics, Model, Output,\n",
" OutputPath, component)"
" OutputPath, component, pipeline)"
]
},
{
@@ -1082,7 +1196,7 @@
"outputs": [],
"source": [
"@component(\n",
" packages_to_install=[\"google-cloud-bigquery\", \"pandas\", \"pyarrow\", \"db-dtypes\"],\n",
" packages_to_install=[\"google-cloud-bigquery\", \"pandas\", \"pyarrow\"],\n",
" base_image=\"python:3.9\",\n",
" output_component_file=\"create_dataset.yaml\",\n",
")\n",
@@ -1100,7 +1214,7 @@
"\n",
"\n",
"@component(\n",
" packages_to_install=[\"scikit-learn\", \"pandas\", \"joblib\"],\n",
" packages_to_install=[\"sklearn\", \"pandas\", \"joblib\"],\n",
" base_image=\"python:3.9\",\n",
" output_component_file=\"beans_model_component.yaml\",\n",
")\n",
@@ -1184,7 +1298,7 @@
" # A name for the pipeline.\n",
" name=\"mlmd-pipeline\",\n",
")\n",
"def my_pipeline(\n",
"def pipeline(\n",
" bq_table: str = \"\",\n",
" output_data_path: str = \"data.csv\",\n",
" project: str = PROJECT_ID,\n",
@@ -1218,22 +1332,20 @@
"source": [
"NOW = datetime.now().isoformat().replace(\".\", \":\")[:-7]\n",
"\n",
"compiler.Compiler().compile(\n",
" pipeline_func=my_pipeline, package_path=\"mlmd_pipeline.json\"\n",
")\n",
"compiler.Compiler().compile(pipeline_func=pipeline, package_path=\"mlmd_pipeline.json\")\n",
"\n",
"run1 = aiplatform.PipelineJob(\n",
"run1 = aip.PipelineJob(\n",
" display_name=\"mlmd-pipeline\",\n",
" template_path=\"mlmd_pipeline.json\",\n",
" job_id=\"mlmd-pipeline-small-unique\",\n",
" job_id=\"mlmd-pipeline-small-{}\".format(TIMESTAMP),\n",
" parameter_values={\"bq_table\": \"sara-vertex-demos.beans_demo.small_dataset\"},\n",
" enable_caching=True,\n",
")\n",
"\n",
"run2 = aiplatform.PipelineJob(\n",
"run2 = aip.PipelineJob(\n",
" display_name=\"mlmd-pipeline\",\n",
" template_path=\"mlmd_pipeline.json\",\n",
" job_id=\"mlmd-pipeline-large-unique\",\n",
" job_id=\"mlmd-pipeline-large-{}\".format(TIMESTAMP),\n",
" parameter_values={\"bq_table\": \"sara-vertex-demos.beans_demo.large_dataset\"},\n",
" enable_caching=True,\n",
")\n",
@@ -1270,7 +1382,7 @@
},
"outputs": [],
"source": [
"df = aiplatform.get_pipeline_df(pipeline=\"mlmd-pipeline\")\n",
"df = aip.get_pipeline_df(pipeline=\"mlmd-pipeline\")\n",
"print(df)"
]
},
@@ -1354,10 +1466,6 @@
},
"outputs": [],
"source": [
"metadata_store_id = (\n",
" f\"projects/{PROJECT_ID}/locations/{REGION}/metadataStores/my-metadata-store-unique\"\n",
")\n",
"\n",
"clients[\"metadata\"].delete_metadata_store(name=metadata_store_id)"
]
},

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