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feat: Updated whl file and package name as part of Vertex Model Garden setup (#4508)

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gmaninatarajan
2026-04-30 08:28:04 -04:00
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parent 849e88a627
commit 71be46e7d8
1 changed files with 12 additions and 25 deletions
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notebooks/community/alphagenome/cloudai_alphagenome_vai_quickstart.ipynb
+12 -25
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@@ -107,9 +107,8 @@
"gcp_project = \"\" # @param {type:\"string\"}\n",
"vertex_ai_url = \"\" # @param {type:\"string\"}\n",
"\n",
"\n",
"code_whl = \"alphagenome-0.4.2.8-py3-none-any.whl\"\n",
"file_path = f\"gs://alphagenome-whl/{code_whl}\"\n"
"code_whl = \"alphagenome_cloud_sdk-0.4.2.9-py3-none-any.whl\"\n",
"file_path = f\"gs://alphagenome-whl/{code_whl}\""
]
},
{
@@ -173,8 +172,7 @@
"\n",
"# # Set the credential\n",
"# !gcloud auth activate-service-account --key-file={service_account_key_file}\n",
"# os.environ[\"GOOGLE_APPLICATION_CREDENTIALS\"] = service_account_key_file\n",
"\n"
"# os.environ[\"GOOGLE_APPLICATION_CREDENTIALS\"] = service_account_key_file"
]
},
{
@@ -196,7 +194,7 @@
"source": [
"# Download and install Install AlphaGenome for Vertex AI\n",
"print(f\"Downloading the wheel file: {file_path}\")\n",
"!gcloud storage cp {file_path} . --billing-project={gcp_project}\n"
"!gcloud storage cp {file_path} . --billing-project={gcp_project}"
]
},
{
@@ -210,7 +208,7 @@
"# @markdown Run this cell to install AlphaGenome.\n",
"from IPython.display import clear_output\n",
"\n",
"! pip install $code_whl\n",
"! pip install $code_whl --force-reinstall\n",
"clear_output()"
]
},
@@ -237,9 +235,9 @@
"from alphagenome.data import transcript as transcript_utils\n",
"from alphagenome.data.genome import Interval\n",
"from alphagenome.interpretation import ism\n",
"from alphagenome.models import (dna_client, dna_client_http, interval_scorers,\n",
" variant_scorers)\n",
"from alphagenome.visualization import plot_components"
"from alphagenome.models import dna_client, interval_scorers, variant_scorers\n",
"from alphagenome.visualization import plot_components\n",
"from alphagenome_cloud_sdk.models import dna_client_http"
]
},
{
@@ -1431,7 +1429,9 @@
},
"outputs": [],
"source": [
"interval = Interval(chromosome=\"chr19\", start=2**20, end=2**20 + 2**20, strand=\".\")\n",
"interval = Interval(\n",
" chromosome=\"chr19\", start=2**20, end=2**20 + 2**20, strand=\".\"\n",
")\n",
"\n",
"scores = dna_model.score_interval(\n",
" interval,\n",
@@ -1585,21 +1585,8 @@
"toc_visible": true
},
"kernelspec": {
"display_name": ".venv (3.13.12)",
"language": "python",
"display_name": "Python 3",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.13.12"
}
},
"nbformat": 4,